Rh7CG432200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000371
Physical Location & Seq
Forward (+)
56545805 .. 56549497
3693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG432200.1

Sequence Viewer

Length: 786 bp
ATGTCGACTGGGTCAGAAAAACCATGCTTATACATAGTCAATGTCTGCTTCGATAGGCCTTTCTTGGTAATACGTCTGGGCCATATGACAGCCCCTTCCATCAAGCCGAAGCCAGATGAATCAGTGTTGTTATGCCTTCATCCTAGTGCTACATCTAAGAAGGCCAATCCCCGCGGCGGCCATGCTAGTACCCGGCATAGTCGAAGGGTTGGATCATCGGGCACATGGAGCCAAGGTGAACCGTCCAAACCCATTTTTGGCGAGAAGAACCAGGAAACCCCAATTGGGCGAAAGACGAAATTGAGGTACGAGAACAAACTGGTGCCGGAACAACACGGTTGTTGGATTATGGAGGAGTATACCAGTGTTGATGATCAATCCAGTTGTCCTGCCGCTCATGATCATTATGTGATTTGCCGACTCCGAGAGAACAAGACTGGACAAAGAAGGAAGTCTCAGGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGCTTTTACAACCAATGAGGCTAGAAAGACAGTGTCTTTGAACCAGAGTCCTAATCCTGAGCAGCAATTTGAAAATGAGTTGATTATTAGTGAGGGTGAGGCACAAAGCAGTATTAGTAATTGTCCCGAGGATATTGATTGGCTTGATCTTGCATTGGAGGATATTGATTGGCTTGATCTTGCATTGGAGGAAGTAGAAGGGGATAGACTATCCCCTGCACTCGCAGAACAACAAACATTGACCTTTCAACTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

261

Amino Acids

29.33

Weight (kDa)

5.75

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 62 - 121 8.4e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 2 cut(s) 5, 359
AccII CGCG 1 cut(s) 174
AciI CCGC 4 cut(s) 172, 174, 177, 393
AclWI GGATC 2 cut(s) 220, 512
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 2 cut(s) 190, 308
AfiI CCNNNNNNNGG 3 cut(s) 176, 257, 285
AgsI TTSAA 3 cut(s) 568, 599, 776
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 2 cut(s) 220, 512
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 4 cut(s) 56, 79, 162, 178
ApeKI GCWGC 1 cut(s) 589
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AspA2I CCTAGG 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 248, 464, 635
AvaI CYCGRG 1 cut(s) 653
AvrII CCTAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 601
BccI CCATC 2 cut(s) 107, 483
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 3 cut(s) 373, 400, 469
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 4 cut(s) 144, 186, 486, 549
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 4 cut(s) 175, 178, 393, 590
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 4 cut(s) 176, 179, 394, 591
Bme1390I CCNGG 2 cut(s) 193, 272
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 230, 324
BmrFI CCNGG 2 cut(s) 193, 272
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 193
BsaBI GATNNNNATC 2 cut(s) 468, 474
BsaJI CCNNGG 4 cut(s) 172, 232, 485, 654
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 257, 285
Bse1I ACTGG 5 cut(s) 13, 324, 363, 381, 442
Bse8I GATNNNNATC 2 cut(s) 468, 474
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 4 cut(s) 172, 232, 485, 654
BseGI GGATG 3 cut(s) 139, 466, 475
BseJI GATNNNNATC 2 cut(s) 468, 474
BseLI CCNNNNNNNGG 3 cut(s) 176, 257, 285
BseMII CTCAG 2 cut(s) 470, 576
BseNI ACTGG 5 cut(s) 13, 324, 363, 381, 442
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 1 cut(s) 601
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 58, 81, 164, 180
BshNI GGYRCC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 2 cut(s) 193, 326
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 176, 257, 285
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 4 cut(s) 58, 81, 164, 180
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
BspACI CCGC 4 cut(s) 172, 174, 177, 393
BspANI GGCC 4 cut(s) 58, 81, 164, 180
BspCNI CTCAG 2 cut(s) 469, 577
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 230, 324
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 2 cut(s) 220, 512
BspT107I GGYRCC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 395
BsrI ACTGG 5 cut(s) 13, 324, 363, 381, 442
BssECI CCNNGG 4 cut(s) 172, 232, 485, 654
BssMI GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
BssNAI GTATAC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 232, 485
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 243, 338, 511, 559
BstDEI CTNAG 3 cut(s) 156, 456, 585
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 3 cut(s) 139, 466, 475
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 7 cut(s) 215, 376, 403, 472, 520, 676, 706
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 191, 270
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 360
BsuRI GGCC 4 cut(s) 58, 81, 164, 180
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 139, 466, 475
BtsIMutI CAGTG 3 cut(s) 129, 370, 564
BveI ACCTGC 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 79
Cfr42I CCGCGG 1 cut(s) 175
Csp6I GTAC 2 cut(s) 189, 307
CviAII CATG 4 cut(s) 24, 182, 225, 398
CviQI GTAC 2 cut(s) 189, 307
DdeI CTNAG 3 cut(s) 156, 456, 585
DpnI GATC 7 cut(s) 214, 375, 402, 471, 519, 675, 705
DpnII GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 232, 485
Eco147I AGGCCT 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 232, 485
ErhI CCWWGG 2 cut(s) 232, 485
FaeI CATG 4 cut(s) 27, 185, 228, 401
FaqI GGGAC 1 cut(s) 636
FatI CATG 4 cut(s) 23, 181, 224, 397
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 84
FbaI TGATCA 3 cut(s) 373, 400, 469
FblI GTMKAC 2 cut(s) 5, 359
Fnu4HI GCNGC 4 cut(s) 175, 178, 393, 590
FokI GGATG 3 cut(s) 126, 462, 473
Fsp4HI GCNGC 4 cut(s) 175, 178, 393, 590
FspBI CTAG 4 cut(s) 144, 186, 486, 549
GluI GCNGC 4 cut(s) 175, 178, 393, 590
HaeIII GGCC 4 cut(s) 58, 81, 164, 180
HapII CCGG 2 cut(s) 193, 326
Hin1II CATG 4 cut(s) 27, 185, 228, 401
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 119, 420, 574
HpaII CCGG 2 cut(s) 193, 326
HphI GGTGA 3 cut(s) 248, 464, 635
Hpy166II GTNNAC 3 cut(s) 6, 239, 360
Hpy188I TCNGA 2 cut(s) 16, 425
Hpy188III TCNNGA 4 cut(s) 398, 458, 584, 653
Hpy8I GTNNAC 3 cut(s) 6, 239, 360
HpyAV CCTTC 6 cut(s) 105, 146, 154, 198, 441, 719
HpyCH4III ACNGT 4 cut(s) 243, 338, 511, 559
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 680, 710, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 3 cut(s) 156, 456, 585
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 4 cut(s) 27, 185, 228, 401
Ksp22I TGATCA 3 cut(s) 373, 400, 469
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 601
MaeI CTAG 4 cut(s) 144, 186, 486, 549
MaeII ACGT 1 cut(s) 73
MalI GATC 7 cut(s) 214, 375, 402, 471, 519, 675, 705
MbiI CCGCTC 1 cut(s) 395
MboI GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 4 cut(s) 282, 299, 593, 646
MlyI GAGTC 2 cut(s) 414, 583
MmeI TCCRAC 2 cut(s) 190, 323
MnlI CCTC 8 cut(s) 297, 346, 538, 613, 619, 649, 679, 709
MseI TTAA 1 cut(s) 784
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 2 cut(s) 193, 326
MspR9I CCNGG 2 cut(s) 193, 272
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 84
NdeII GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
NlaIII CATG 4 cut(s) 27, 185, 228, 401
NlaIV GGNNCC 2 cut(s) 230, 324
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 58
PfeI GAWTC 1 cut(s) 119
PflFI GACNNNGTC 2 cut(s) 10, 559
PkrI GCNGC 4 cut(s) 176, 179, 394, 591
PleI GAGTC 2 cut(s) 414, 582
PpsI GAGTC 2 cut(s) 414, 582
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 230, 324
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 515
PsyI GACNNNGTC 2 cut(s) 10, 559
RsaI GTAC 2 cut(s) 190, 308
RsaNI GTAC 2 cut(s) 189, 307
RseI CAYNNNNRTG 1 cut(s) 144
SacII CCGCGG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 784
SatI GCNGC 4 cut(s) 175, 178, 393, 590
Sau3AI GATC 7 cut(s) 212, 373, 400, 469, 517, 673, 703
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 2 cut(s) 414, 583
ScrFI CCNGG 2 cut(s) 193, 272
SduI GDGCHC 1 cut(s) 224
SetI ASST 5 cut(s) 76, 238, 308, 529, 773
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 282, 299, 593, 646
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 4 cut(s) 172, 174, 177, 393
SspMI CTAG 4 cut(s) 144, 186, 486, 549
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 191, 270
StyI CCWWGG 2 cut(s) 232, 485
TaaI ACNGT 4 cut(s) 243, 338, 511, 559
TaiI ACGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 5, 51, 202
TasI AATT 4 cut(s) 282, 299, 593, 646
TauI GCSGC 3 cut(s) 177, 180, 395
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 784
Tru9I TTAA 1 cut(s) 784
TscAI CASTG 3 cut(s) 129, 370, 564
TseI GCWGC 1 cut(s) 589
TspDTI ATGAA 2 cut(s) 128, 132
TspRI CASTG 3 cut(s) 129, 370, 564
Tth111I GACNNNGTC 2 cut(s) 10, 559
XmaJI CCTAGG 1 cut(s) 485
XmiI GTMKAC 2 cut(s) 5, 359
XspI CTAG 4 cut(s) 144, 186, 486, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.