FvH4_5g31040
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000371
Physical Location & Seq
Reverse (-)
21969207 .. 21970454
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31040.t1

Sequence Viewer

Length: 1248 bp
ATGATGGATCGTTGCACTCGGGTGGTGGGTCTCAGATTCCATCCGTCCGATCAAGAGTTGATCGGACACTTTCTTTTCATCAAGAACAACCCCAATTCGGTGCCGGAGATGAGATCCTCGTTTTTGCGGGAGTTTGATATGTACGGTGAGGTAGAGCCGTGGACGATTTGGGAAGCCAATGGGGGACCGCTTCTCGATGACCAGGATCTCTTCTTCTTCACTCGCCTTAAGAAGCACAAGAACCGAATCAATCGAAGAATTGGATCCGGTACTTGGAGCCAAGGCGAGAACTACAAACCAGTTTATGCCAAAAACAACCAAGAAACCCCAATTGGGAAAAAGACCAAACTGAGGTATGAGAACAAAGAGGTGCCGGAGCAAAGCGGTTGTTGGTTCATGGATGAGTACAGCGCTGTTGATGATGGTGATTATGTGATTTGCCGACTCCGAGAGAACCCTAGCAAGAGACCATCACCACCATCATCAAAGCCTAGTGATAAAAAGAGGAAGTGTCAACATGATCCAGAGCCTAGCAAAAAGCCCAAGTCGACAACCAATGAGGCTAGAAAGACCGTGTCTTTGAATCAGAGGCCTAATCCTGAGACGCAATTCGACACTATGGAAATGTTCCATCATGATCAGGAATATGAGACTCAACAATATTTGTTGTTAGAGGGTACTGGATTGGAGGAAGTACAAAGGGATGTATTAGCCCCTGCCGTTTCAGAACAACAACACACATGTTCATCATCATTCGCGCTGCTCAATACTACCAACGACGTGTTTGGGTCTGAAAATGACAGTGGAAATGCGCAGTTAGAGGATACTGATTGGCTTGGTGATGCATTGGAGGATGTAGAAGGGGATTCATTATTTCCTGCCCTCTCAGAACAACAAACATCATTCATGTCACAGATGCAGGACATTCCTTCTCAAGAAAACATCATTGAGTCTCATATTCAGTCACCACATTTGCCTCCCATCGGATCAGAATCGCAACAACCAGCAGATCAAACTGGGTTGGTTATTAGCGATCCACAAGTCAGTACCAATGAAGAATTCAGTTTTGCTTATGATAATTTCAGTGTTCCAATGGATCCAGCCTACAATATTAACTCTGATGAATTCAGCAACTACAACTTTGGCGATGAGTTCTTGTCGGGAGGGGATGACATTGGTACAGCAGATATACTACAAGGATCAATATCATTTTCAGAGCTTCTTGAAGATCAGAATCATGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

416

Amino Acids

47.17

Weight (kDa)

4.54

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 137 9.9e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 813
AccB1I GGYRCC 2 cut(s) 100, 370
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 758
AciI CCGC 3 cut(s) 127, 188, 384
AcsI RAATTY 2 cut(s) 1058, 1124
AfaI GTAC 7 cut(s) 143, 271, 407, 679, 696, 1048, 1180
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 5 cut(s) 97, 273, 333, 351, 983
AflII CTTAAG 1 cut(s) 227
AflIII ACRYGT 2 cut(s) 740, 780
AgsI TTSAA 2 cut(s) 583, 1226
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 4 cut(s) 315, 347, 1043, 1075
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 1 cut(s) 1219
AluI AGCT 1 cut(s) 1219
Alw26I GTCTC 5 cut(s) 35, 460, 596, 644, 957
Ama87I CYCGRG 1 cut(s) 18
Aor51HI AGCGCT 1 cut(s) 412
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 760
ApoI RAATTY 2 cut(s) 1058, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AspLEI GCGC 3 cut(s) 413, 760, 814
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 5 cut(s) 158, 437, 465, 851, 957
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 185
BamHI GGATCC 2 cut(s) 263, 1096
BanI GGYRCC 2 cut(s) 100, 370
BbvI GCAGC 1 cut(s) 747
BccI CCATC 6 cut(s) 48, 416, 478, 487, 639, 989
BceAI ACGGC 2 cut(s) 142, 704
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 5 cut(s) 35, 460, 596, 644, 957
BfaI CTAG 4 cut(s) 459, 492, 531, 564
BfoI RGCGCY 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 227
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 1 cut(s) 761
BlsI GCNGC 1 cut(s) 762
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 6 cut(s) 102, 186, 265, 278, 372, 1098
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 1026
BmsI GCATC 2 cut(s) 832, 906
BmuI ACTGGG 1 cut(s) 1026
BpuEI CTTGAG 1 cut(s) 918
BsaBI GATNNNNATC 3 cut(s) 991, 1204, 1233
BsaI GGTCTC 2 cut(s) 35, 460
BsaJI CCNNGG 2 cut(s) 158, 280
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 273, 333, 351, 983
Bse1I ACTGG 3 cut(s) 299, 685, 1021
Bse8I GATNNNNATC 3 cut(s) 991, 1204, 1233
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 158, 280
BseGI GGATG 5 cut(s) 40, 406, 709, 859, 1174
BseJI GATNNNNATC 3 cut(s) 991, 1204, 1233
BseLI CCNNNNNNNGG 5 cut(s) 97, 273, 333, 351, 983
BseMII CTCAG 4 cut(s) 46, 341, 591, 900
BseNI ACTGG 3 cut(s) 299, 685, 1021
BseXI GCAGC 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 1 cut(s) 592
BshNI GGYRCC 2 cut(s) 100, 370
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 3 cut(s) 104, 267, 374
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 5 cut(s) 97, 273, 333, 351, 983
BsmAI GTCTC 5 cut(s) 35, 460, 596, 644, 957
BsmBI CGTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 592
Bso31I GGTCTC 2 cut(s) 35, 460
BsoBI CYCGRG 1 cut(s) 18
BspACI CCGC 3 cut(s) 127, 188, 384
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 4 cut(s) 45, 342, 592, 899
BspFNI CGCG 1 cut(s) 758
BspHI TCATGA 2 cut(s) 634, 1237
BspLI GGNNCC 6 cut(s) 102, 186, 265, 278, 372, 1098
BspT107I GGYRCC 2 cut(s) 100, 370
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 35, 460
BsrI ACTGG 3 cut(s) 299, 685, 1021
BssECI CCNNGG 2 cut(s) 158, 280
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 146, 574, 803
Bst6I CTCTTC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 4 cut(s) 32, 350, 600, 886
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 5 cut(s) 40, 406, 709, 859, 1174
BstFNI CGCG 1 cut(s) 758
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 3 cut(s) 413, 760, 814
BstMAI GTCTC 5 cut(s) 35, 460, 596, 644, 957
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 1 cut(s) 747
BstX2I RGATCY 4 cut(s) 113, 205, 263, 1096
BstYI RGATCY 4 cut(s) 113, 205, 263, 1096
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 1161
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 5 cut(s) 40, 406, 709, 859, 1174
BtsIMutI CAGTG 2 cut(s) 808, 1090
CciI TCATGA 2 cut(s) 634, 1237
CfoI GCGC 3 cut(s) 413, 760, 814
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 613
Csp6I GTAC 7 cut(s) 142, 270, 406, 678, 695, 1047, 1179
CviAII CATG 6 cut(s) 397, 518, 635, 741, 907, 1238
CviQI GTAC 7 cut(s) 142, 270, 406, 678, 695, 1047, 1179
DdeI CTNAG 4 cut(s) 32, 350, 600, 886
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 592
Eco31I GGTCTC 2 cut(s) 35, 460
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 18
EcoRI GAATTC 2 cut(s) 1058, 1124
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 280
EcoT22I ATGCAT 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 596
FaeI CATG 6 cut(s) 400, 521, 638, 744, 910, 1241
FaqI GGGAC 1 cut(s) 198
FatI CATG 6 cut(s) 396, 517, 634, 740, 906, 1237
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 1 cut(s) 761
FokI GGATG 5 cut(s) 27, 413, 716, 866, 1181
Fsp4HI GCNGC 1 cut(s) 761
FspBI CTAG 4 cut(s) 459, 492, 531, 564
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 3 cut(s) 412, 759, 813
GluI GCNGC 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 1 cut(s) 592
HapII CCGG 3 cut(s) 104, 267, 374
HgaI GACGC 1 cut(s) 613
HhaI GCGC 3 cut(s) 413, 760, 814
Hin1II CATG 6 cut(s) 400, 521, 638, 744, 910, 1241
Hin6I GCGC 3 cut(s) 411, 758, 812
HinP1I GCGC 3 cut(s) 411, 758, 812
HincII GTYRAC 2 cut(s) 515, 549
HindII GTYRAC 2 cut(s) 515, 549
HinfI GANTC 9 cut(s) 36, 246, 444, 583, 652, 866, 950, 992, 1234
HpaII CCGG 3 cut(s) 104, 267, 374
HphI GGTGA 5 cut(s) 158, 437, 465, 851, 957
Hpy166II GTNNAC 3 cut(s) 162, 515, 549
Hpy8I GTNNAC 3 cut(s) 162, 515, 549
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 2 cut(s) 854, 939
HpyCH4III ACNGT 3 cut(s) 146, 574, 803
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 3 cut(s) 15, 845, 919
HpyF3I CTNAG 4 cut(s) 32, 350, 600, 886
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 6 cut(s) 400, 521, 638, 744, 910, 1241
HspAI GCGC 3 cut(s) 411, 758, 812
Ksp22I TGATCA 1 cut(s) 637
LmnI GCTCC 2 cut(s) 276, 376
Lsp1109I GCAGC 1 cut(s) 747
LweI GCATC 2 cut(s) 832, 906
MaeI CTAG 4 cut(s) 459, 492, 531, 564
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 2 cut(s) 909, 963
MboII GAAGA 6 cut(s) 202, 205, 208, 267, 1067, 1238
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 4 cut(s) 113, 205, 263, 1096
MluCI AATT 7 cut(s) 94, 258, 330, 608, 1058, 1078, 1124
MlyI GAGTC 3 cut(s) 438, 646, 959
Mph1103I ATGCAT 1 cut(s) 847
MseI TTAA 2 cut(s) 228, 1113
MslI CAYNNNNRTG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 3 cut(s) 104, 267, 374
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 758
NlaIII CATG 6 cut(s) 400, 521, 638, 744, 910, 1241
NlaIV GGNNCC 6 cut(s) 102, 186, 265, 278, 372, 1098
NmuCI GTSAC 2 cut(s) 909, 963
NsbI TGCGCA 1 cut(s) 813
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 1 cut(s) 744
OliI CACNNNNGTG 1 cut(s) 20
PagI TCATGA 2 cut(s) 634, 1237
PceI AGGCCT 1 cut(s) 592
PciI ACATGT 1 cut(s) 740
PfeI GAWTC 6 cut(s) 36, 246, 583, 866, 992, 1234
PflFI GACNNNGTC 1 cut(s) 574
PkrI GCNGC 1 cut(s) 762
PleI GAGTC 3 cut(s) 438, 646, 958
PpsI GAGTC 3 cut(s) 438, 646, 958
PscI ACATGT 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 6 cut(s) 102, 186, 265, 278, 372, 1098
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 4 cut(s) 113, 205, 263, 1096
PsyI GACNNNGTC 1 cut(s) 574
RsaI GTAC 7 cut(s) 143, 271, 407, 679, 696, 1048, 1180
RsaNI GTAC 7 cut(s) 142, 270, 406, 678, 695, 1047, 1179
RseI CAYNNNNRTG 1 cut(s) 20
SalI GTCGAC 1 cut(s) 547
SaqAI TTAA 2 cut(s) 228, 1113
SatI GCNGC 1 cut(s) 761
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 3 cut(s) 438, 646, 959
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 153, 356, 372, 783, 1221
SfaNI GCATC 2 cut(s) 832, 906
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 227, 933
SmoI CTYRAG 2 cut(s) 227, 933
Sse9I AATT 7 cut(s) 94, 258, 330, 608, 1058, 1078, 1124
SseBI AGGCCT 1 cut(s) 592
SsiI CCGC 3 cut(s) 127, 188, 384
SspI AATATT 2 cut(s) 662, 1111
SspMI CTAG 4 cut(s) 459, 492, 531, 564
StuI AGGCCT 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 3 cut(s) 146, 574, 803
TaiI ACGT 1 cut(s) 783
TaqI TCGA 4 cut(s) 195, 253, 548, 612
TasI AATT 7 cut(s) 94, 258, 330, 608, 1058, 1078, 1124
TatI WGTACW 2 cut(s) 405, 694
TfiI GAWTC 6 cut(s) 36, 246, 583, 866, 992, 1234
Tru1I TTAA 2 cut(s) 228, 1113
Tru9I TTAA 2 cut(s) 228, 1113
TscAI CASTG 2 cut(s) 808, 1090
TseFI GTSAC 2 cut(s) 909, 963
TseI GCWGC 1 cut(s) 760
Tsp45I GTSAC 2 cut(s) 909, 963
TspDTI ATGAA 7 cut(s) 67, 385, 735, 858, 895, 1068, 1137
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 808, 1090
Tth111I GACNNNGTC 1 cut(s) 574
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 1058, 1124
XceI RCATGY 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 4 cut(s) 459, 492, 531, 564
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.