Rroxscaffold_4G00294750
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000371
Physical Location & Seq
Reverse (-)
14731837 .. 14732634
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294750.1

Sequence Viewer

Length: 372 bp
ATGAGTGGTTCTTCTTCAACCAACTTGACCAGAAATGGAAGAAGTCCAAGCGTATTGAAAGAAGCACAAAGGAAGGAAGATGGAAGTCCATCGAGGGAACTTGTTCTATGCCGCTTGAAGAACTATGGAAGTCATGGCCTGGCTCATGATATGGGGTTGACCATTAGTAACAGTAAATCTTCAACAGATTACTCATTATTAAATAGATTGCCAGTCGGTTTCAGATTCCAACCCACAGATGAGGAGTTGGTGGATTACTACTTGAGAAACAAGATACATGACAATGACGGCATAGATTCCGAACAAGTTGATTCCATCATTTCTGAATTTGATTTCTACAAGTATGAACCTCGGGAATTACCAGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0002230 GO:0002237 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009814 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016020 GO:0016032 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0033554 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043900 GO:0044212 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0098542 GO:0140110 GO:1900101 GO:1900103 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1905898 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

5.59

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 71 - 123 2.2e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 326
AgsI TTSAA 4 cut(s) 18, 58, 118, 183
AjnI CCWGG 2 cut(s) 138, 361
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 351
BccI CCATC 3 cut(s) 74, 97, 323
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 140, 363
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 140, 363
BmeT110I CYCGRG 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 140, 363
BpuEI CTTGAG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 140, 363
BseDI CCNNGG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 351
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 351
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 138
BspHI TCATGA 1 cut(s) 145
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 140, 363
Bst4CI ACNGT 1 cut(s) 173
BstNI CCWGG 2 cut(s) 140, 363
BstSCI CCNGG 2 cut(s) 138, 361
BsuRI GGCC 1 cut(s) 138
CciI TCATGA 1 cut(s) 145
CsiI ACCWGGT 1 cut(s) 361
CviAII CATG 3 cut(s) 134, 146, 278
CviJI RGCY 2 cut(s) 138, 143
CviKI_1 RGCY 2 cut(s) 138, 143
Eco88I CYCGRG 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 138, 361
FaeI CATG 3 cut(s) 137, 149, 281
FaiI YATR 8 cut(s) 109, 126, 135, 147, 152, 279, 293, 345
FatI CATG 3 cut(s) 133, 145, 277
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 3 cut(s) 137, 149, 281
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 3 cut(s) 225, 296, 311
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 224, 301, 325
Hpy188III TCNNGA 2 cut(s) 146, 353
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 173
Hsp92II CATG 3 cut(s) 137, 149, 281
LpnPI CCDG 5 cut(s) 43, 125, 152, 225, 348
MabI ACCWGGT 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 167
MboII GAAGA 6 cut(s) 3, 6, 51, 89, 130, 171
MluCI AATT 2 cut(s) 326, 356
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 3 cut(s) 87, 235, 360
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 140, 363
MvaI CCWGG 2 cut(s) 140, 363
NlaIII CATG 3 cut(s) 137, 149, 281
PagI TCATGA 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 225, 296, 311
PkrI GCNGC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 138, 361
PspGI CCWGG 2 cut(s) 138, 361
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 140, 363
SetI ASST 2 cut(s) 352, 367
SexAI ACCWGGT 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 326, 356
SsiI CCGC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 138, 361
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 92
TasI AATT 2 cut(s) 326, 356
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 3 cut(s) 225, 296, 311
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 360
XapI RAATTY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.