RchiOBHm_Chr5g0047081
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000371
Physical Location & Seq
Forward (+)
43381744 .. 43382577
834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32501

Sequence Viewer

Length: 210 bp
ATGAGTGGGATTTCCAAGGAGGCTCAGCTTTCCATCGCTGCCTCCTCGATGTTTCCGGGGTTTAGGTTCTCACCGACCGACGAGGAATTGATTTCGCACTACCTTAAGAACAAGTTGGAGTACCCTGAGAAGAGCGTGGAGGTCATTTCCGAAGTTGATATCTGCAACTTCGAGCCCTGGGACCTACCGGGTTTGTTTGTTAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

69

Amino Acids

7.87

Weight (kDa)

4.6

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 64 6.2e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 122
AflII CTTAAG 1 cut(s) 104
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 57, 189
AsuHPI GGTGA 1 cut(s) 63
AvaII GGWCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 2 cut(s) 57, 189
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 57, 178, 189
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 3 cut(s) 57, 178, 189
Bpu1102I GCTNAGC 1 cut(s) 24
BpuMI CCSGG 2 cut(s) 57, 189
BsaJI CCNNGG 4 cut(s) 15, 56, 176, 177
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 4 cut(s) 15, 56, 176, 177
BseMII CTCAG 2 cut(s) 38, 117
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 56, 188
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 177
Bsp1720I GCTNAGC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 37, 118
BspLI GGNNCC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 15, 56, 176, 177
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 24, 126
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 55, 176, 187
BstV1I GCAGC 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 3 cut(s) 23, 28, 175
CviKI_1 RGCY 3 cut(s) 23, 28, 175
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 24, 126
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 176
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 15
FaqI GGGAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HapII CCGG 2 cut(s) 56, 188
HpaII CCGG 2 cut(s) 56, 188
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 24, 126
LguI GCTCTTC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 69, 138, 163, 190, 201
Lsp1109I GCAGC 1 cut(s) 25
MboII GAAGA 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 13, 52, 55, 76, 133
MseI TTAA 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 56, 188
MspR9I CCNGG 3 cut(s) 57, 178, 189
MvaI CCWGG 1 cut(s) 178
NciI CCSGG 2 cut(s) 57, 189
NlaIV GGNNCC 1 cut(s) 182
PasI CCCWGGG 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 3 cut(s) 57, 178, 189
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 30, 68, 105, 144, 186
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 55, 176, 187
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 2 cut(s) 47, 171
TaqII GACCGA 1 cut(s) 92
TasI AATT 1 cut(s) 86
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 1 cut(s) 38
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.