Rh7BG127300

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000371
Physical Location & Seq
Reverse (-)
9434162 .. 9434440
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG127300.1

Sequence Viewer

Length: 279 bp
ATGGATCGTTGTTTTCCGGTGGGTGTGAGATTCCACCCGACTGATGAAGAATTGATTGGCCACTACCTCTACTGCAAGAATAATCCTAACTCGGCGGCCACACAATCCTTGCTTCTTCCTGAGTTTGATTTATACGGTGAGGCCGAACCCTGGATCATTTGGGAGGCCTACGGAGGACTCAATCTGAAACAAGAAGATCTCTTCTTTTTCACTCTCCATAAGAAGAAGGCCAATCCCCGTGGCGGCCATGCTAGTACCCGGCATAGGAGACCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

92

Amino Acids

10.69

Weight (kDa)

7.84

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 83 4.3e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 243
AclWI GGATC 2 cut(s) 12, 161
AcoI YGGCCR 3 cut(s) 58, 96, 244
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 150, 242, 264
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 12, 161
AoxI GGCC 6 cut(s) 58, 96, 141, 165, 228, 244
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 149
BalI TGGCCA 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 96, 244
BlsI GCNGC 2 cut(s) 97, 245
Bme1390I CCNGG 2 cut(s) 151, 259
BmrFI CCNGG 2 cut(s) 151, 259
BpuMI CCSGG 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 149, 238
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 242, 264
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 149, 238
BseLI CCNNNNNNNGG 3 cut(s) 150, 242, 264
BseMII CTCAG 1 cut(s) 111
BshFI GGCC 6 cut(s) 60, 98, 143, 167, 230, 246
BsiSI CCGG 2 cut(s) 17, 259
BslI CCNNNNNNNGG 3 cut(s) 150, 242, 264
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 6 cut(s) 60, 98, 143, 167, 230, 246
Bso31I GGTCTC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 4, 153, 196
BspACI CCGC 2 cut(s) 95, 243
BspANI GGCC 6 cut(s) 60, 98, 143, 167, 230, 246
BspCNI CTCAG 1 cut(s) 112
BspPI GGATC 2 cut(s) 12, 161
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 149, 238
BssMI GATC 3 cut(s) 4, 153, 196
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 238
BstKTI GATC 3 cut(s) 7, 156, 199
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 3 cut(s) 4, 153, 196
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 149, 257
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 6 cut(s) 60, 98, 143, 167, 230, 246
BtgI CCRYGG 1 cut(s) 238
Csp6I GTAC 1 cut(s) 255
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 1 cut(s) 248
CviJI RGCY 6 cut(s) 60, 98, 143, 167, 230, 246
CviKI_1 RGCY 6 cut(s) 60, 98, 143, 167, 230, 246
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 6, 155, 198
DpnII GATC 3 cut(s) 4, 153, 196
EaeI YGGCCR 3 cut(s) 58, 96, 244
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 251
FaiI YATR 4 cut(s) 133, 219, 249, 264
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 96, 244
Fsp4HI GCNGC 2 cut(s) 96, 244
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 96, 244
HaeIII GGCC 6 cut(s) 60, 98, 143, 167, 230, 246
HapII CCGG 2 cut(s) 17, 259
Hin1II CATG 1 cut(s) 251
HinfI GANTC 2 cut(s) 30, 177
HpaII CCGG 2 cut(s) 17, 259
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 3 cut(s) 4, 153, 196
LpnPI CCDG 5 cut(s) 30, 132, 136, 163, 272
MaeI CTAG 1 cut(s) 252
MalI GATC 3 cut(s) 6, 155, 198
MboI GATC 3 cut(s) 4, 153, 196
MboII GAAGA 5 cut(s) 59, 107, 193, 206, 235
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 4 cut(s) 77, 133, 157, 167
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 2 cut(s) 17, 259
MspR9I CCNGG 2 cut(s) 151, 259
MvaI CCWGG 1 cut(s) 151
NciI CCSGG 1 cut(s) 259
NdeII GATC 3 cut(s) 4, 153, 196
NlaIII CATG 1 cut(s) 251
NmeAIII GCCGAG 1 cut(s) 71
PceI AGGCCT 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 97, 245
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 2 cut(s) 96, 244
Sau3AI GATC 3 cut(s) 4, 153, 196
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 151, 259
SetI ASST 1 cut(s) 69
Sse9I AATT 1 cut(s) 50
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 2 cut(s) 95, 243
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 149, 257
TaaI ACNGT 1 cut(s) 137
TasI AATT 1 cut(s) 50
TauI GCSGC 2 cut(s) 98, 246
TfiI GAWTC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 186
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.