RchiOBHm_Chr2g0173051

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
86190504 .. 86197120
6617 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54029

Sequence Viewer

Length: 2796 bp
ATGGAATTAAAAGTCTCATCTCCAAAACCAGGTGGCCTTTCTCCTTCTGATTGTGTTAGTGAACCTGAGGAGAAGGAAGTCAGTGATGACGACGATGATGATCGAAATCACAAACATCGTAGACGAGATACTCGTTCTCAGTCTTTGGAGAGAGATAGCCTCGATCAAGTTATAACAAGGCCATACAGAAAAAGGAATAAACCTTTTGCCAATGGGCACTCTTTCAGAGATAATGACTCCCAAGCGAGTACACCATGGAAAAATTATAATTCCACTGCTTTTGAGAAAGACTTTTTTGTAAAGTTTGATAAAAGACGCCCAGGTTCAACATCACTGCCTCGACCACCTTTCGATTTAAATCAAAGGATGCGGGCAAACCAAGCATTCCCTGGAGACCTTGGTCCTGGTAGGGGAAGAGGAAGGGACTCTGGACCATGGAGCCAACGTGATTCTAGGTTCAGCTCTGATATTGCATCTCAATTGGTTCCTCCAAGTATGTTTGCTGGACGGGGATTGCCGAATGTTTCCAATCCACAGAGTGCGTCCTGGAATGCATTTGGACTGCTTCCAGGAGTACCAAATGGTGGCCTGGATACACTACATTCAATTGGGTTACAAGGTACACTCAGACCACCAATCCATTCTTCTTTGAATATGGGTATTCCTCGCCAAAGATGTAGAGACTTTGAGGAGCGTGGGTTTTGTCTAAGAGGGGACATGTGTCCAATGGAACATGGTGTCAATCGAATCGTTGTTGAAGATGTTCAGAGTCTTTCTCAGTTCAACCTTCCTGTTTCACTTCCAAGTGCACACCTACTTGGAAAACCCACTGGTCCTGGAACTCTACCATCAGTCAGTACATCTTCAACTTCATTGATGAATAGCAAAGGATTGCATAGTAAAACGAGCAAGTCTAGTGTCACTGATGATGCTTCTTTGGGTGGAGCTGATTTGTATGACCCTGATCAACCTCTGTGGAATAATAATGGTCCTGAAACCTCAAATACAATTTTAGGCCTTCAGTCACCTAGGAATGATGAAACTGATTCCTTATCGAATGATGATGCTTCTGACCGTCATCAAGCCAGATTATGTGATAATGCAGATAATGAATGCCCAATTAGAACTGTTGGAACTGCTGCTGGTTCACAGAGTACAAGCATGTCAGTCTGGGGGAGAATTGGTAGCTCAAAAAATAGATCAGATGTGAAAGAGAAAATTAATCCTACGGTAAATTATTCAGATTATCCTGAGAATGAAACTAAGGAGTCATTAGTCAGCATTCAGAATCAGCAACGTCAAGGAAAGCGTATCATTGCAGAGGATGCGGCTCCCAAACCCCTAGATTCATTACCCAAGAGACCATATGATACTATGCGTAATGTTCGTAAACCATCTCAGAAAGCATTACGTACTCTATTTGTCAACGGGATTCCTCAGAAAAGCAACAGAAGGGAAGCCCTTGTTTCTCATTTTCAAAAATTTGGAGAGATTGTGGACATTTATATTCCATCTAATAGTGAGCGAGCTTTTGTCCAGTTTTCCAAGAGAGAAGAGGCTGAAGCTGCTTTAAAGGCACCTGATGCTGTAATGGGTAATCGTTTTATCAAGTTGTGGTGGGCAAATCGTGATAGCGTTCCGGAGGATGGCACAGGCAATGCTAATATTGTTTCTGAGAACTCCCCTGGTTTGATAGCTGTTTCAGTTCCACTCCATTCATCTGTTTCTAGCATTAGCAAGGATAATCATCAATCTGCTTCTTCAAAGGGTGGTATGGTTCATGCAACTGATTCTTCTCTACCATCCTCTGATAATTCTAAGCCTGTAATCTCAAATGGTCCCAAGGCTCCACCTCTGCAGAAGAAGTTAGAGAATTTAGAGCAGTTAAAGGAGGAACTTCGCAAGAAGCAAGAAATGCTGGACCAGAAAAGGAACGACTTTCGTCGCCAGTTGTACAAGCTTGAGAAACAAGCTGGTCCGAAGGTTGAGGCAGACACAGAGCTAGCTGCCAAGAGACGCAAAGTGGGATTAGCAGCTGACATTGGTAAAGTTGCTACTCCGAGTTCCACCAGTCCTGCTACTGTGTCAACACTGCATGATGAGATATTGACTGATAAAAACACATCGGGGGAAACCATTGTCTCCTATAGTCCTAAAACAAGTACAACTACGGCGCTACAGCAATCCCTTAGCTTGAAGCATCAGACAATTCGTCCATTAGCACCACTAGGGACTCCTGTTCCACTGAATCGATACAAATTAGACAATCGTCCTACTGGATTTAGAATCCTTCCTCCTTTACCATCTGGATTTGCAAATGTTGCTGTTATGAAGGAACACTTTGCACCATATGGTGATATCTCTGATATGGAGTTGGAAGATCTGGAATCCTGTGATAGTGGTAGCGAGTTGGACGTATCAAAATCAAAGGAATGCTCAGCTCGTATAACTTTTGCAACACGTCGTTCAGCAGAGAAAGCATTTCTCAATGGTAAATGCTGGGAAGGGTGCGACTTAAAATTTGTGTGGTTGACATCTAGTAACTCCAGCAATGACCGAAATGGTGGGGAAAAATCTCCATCCACCACTCCTAGGGGGCCATTATCAGCTGATGTTCAGCCTGCAGATAAGCTAGCATGCACTACTTCCCATGATGCAGCTGCATCAGGCGATGCAGAATCTGAACATTCTGAAAGAAAAGGTGGTGTTGAGCACATGGAACTGGGTGAACCTTCTGAGTTTAGTTCAAGCCCTATGTCTCCGGTGAAAGAGTCATCTAAAGGCGATGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

931

Amino Acids

101.75

Weight (kDa)

7.6

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 473 - 536 6.5e-08 RNA recognition motif
Nup35_RRM_2 PF14605 474 - 524 1.2e-06 Nup53/35/40-type RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011914)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 173, 267
AccB1I GGYRCC 1 cut(s) 1576
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 1639
AciI CCGC 2 cut(s) 370, 1328
AcsI RAATTY 3 cut(s) 1481, 1873, 2519
AcuI CTGAAG 2 cut(s) 1004, 1581
AcyI GRCGYC 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 8 cut(s) 250, 576, 622, 859, 1156, 1414, 1955, 2164
AfiI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
AflIII ACRYGT 2 cut(s) 717, 2459
AhdI GACNNNNNGTC 1 cut(s) 2211
AjiI CACGTC 1 cut(s) 2462
AjnI CCWGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
Alw21I GWGCWC 2 cut(s) 811, 2715
Alw26I GTCTC 7 cut(s) 19, 387, 675, 1354, 2008, 2146, 2763
Alw44I GTGCAC 1 cut(s) 807
AlwNI CAGNNNCTG 1 cut(s) 2681
Aor13HI TCCGGA 1 cut(s) 1639
AoxI GGCC 5 cut(s) 34, 179, 586, 1015, 2597
ApaLI GTGCAC 1 cut(s) 807
ApeKI GCWGC 6 cut(s) 1139, 1565, 2006, 2033, 2657, 2660
ApoI RAATTY 3 cut(s) 1481, 1873, 2519
ArsI GACNNNNNNTTYG 2 cut(s) 2504, 2536
AseI ATTAAT 1 cut(s) 1221
Asp700I GAANNNNTTC 1 cut(s) 762
AspA2I CCTAGG 2 cut(s) 1028, 2591
AspLEI GCGC 1 cut(s) 2176
AspS9I GGNCC 8 cut(s) 401, 431, 833, 989, 1838, 1921, 1976, 2597
AsuHPI GGTGA 4 cut(s) 1017, 2366, 2738, 2776
AsuNHI GCTAGC 2 cut(s) 2002, 2632
AvaII GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
AvrII CCTAGG 2 cut(s) 1028, 2591
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 2 cut(s) 219, 811
BanI GGYRCC 1 cut(s) 1576
Bbv12I GWGCWC 2 cut(s) 811, 2715
BbvI GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BccI CCATC 7 cut(s) 856, 1402, 1519, 1640, 1810, 2311, 2587
BceAI ACGGC 1 cut(s) 2187
BciT130I CCWGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 7 cut(s) 19, 387, 675, 1354, 2008, 2146, 2763
BfmI CTRYAG 4 cut(s) 1856, 2146, 2177, 2622
BfoI RGCGCY 1 cut(s) 2177
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 2380
BisI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
BlnI CCTAGG 2 cut(s) 1028, 2591
BlpI GCTNAGC 1 cut(s) 2437
BlsI GCNGC 7 cut(s) 1141, 1330, 1567, 2008, 2035, 2659, 2662
Bme1390I CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
Bme18I GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
BmeRI GACNNNNNGTC 1 cut(s) 2211
BmgBI CACGTC 1 cut(s) 2462
BmgT120I GGNCC 8 cut(s) 401, 431, 833, 989, 1838, 1921, 1976, 2597
BmiI GGNNCC 7 cut(s) 440, 486, 1332, 1578, 1840, 1848, 2598
BmrFI CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
BmrI ACTGGG 1 cut(s) 2732
BmtI GCTAGC 2 cut(s) 2006, 2636
BmuI ACTGGG 1 cut(s) 2732
BoxI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
BplI GAGNNNNNCTC 4 cut(s) 144, 176, 760, 792
BpmI CTGGAG 2 cut(s) 411, 2530
Bpu10I CCTNAGC 1 cut(s) 2189
Bpu1102I GCTNAGC 1 cut(s) 2437
BpuEI CTTGAG 1 cut(s) 1982
Bsa29I ATCGAT 1 cut(s) 2251
BsaAI YACGTR 1 cut(s) 1412
BsaBI GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BsaHI GRCGYC 1 cut(s) 316
BsaI GGTCTC 2 cut(s) 387, 1354
BsaJI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BsaWI WCCGGW 2 cut(s) 1639, 2761
BsaXI ACNNNNNCTCC 8 cut(s) 430, 460, 683, 713, 1168, 1198, 1479, 1509
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
Bse1I ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 3 cut(s) 1314, 1663, 2557
Bse8I GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BseAI TCCGGA 1 cut(s) 1639
BseBI CCWGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
BseCI ATCGAT 1 cut(s) 2251
BseDI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BseGI GGATG 5 cut(s) 372, 1330, 1651, 1802, 2579
BseJI GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BseLI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
BseMI GCAATG 3 cut(s) 1314, 1663, 2557
BseNI ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
BseRI GAGGAG 2 cut(s) 83, 704
BseSI GKGCMC 2 cut(s) 219, 811
BseXI GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BseYI CCCAGC 1 cut(s) 2499
BshFI GGCC 5 cut(s) 36, 181, 588, 1017, 2599
BshNI GGYRCC 1 cut(s) 1576
BshVI ATCGAT 1 cut(s) 2251
BsiHKAI GWGCWC 2 cut(s) 811, 2715
BsiSI CCGG 2 cut(s) 1640, 2762
BslFI GGGAC 4 cut(s) 437, 728, 1824, 2245
BslI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
BsmAI GTCTC 7 cut(s) 19, 387, 675, 1354, 2008, 2146, 2763
BsmBI CGTCTC 1 cut(s) 2008
BsmFI GGGAC 4 cut(s) 437, 728, 1824, 2245
BsmI GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
BsnI GGCC 5 cut(s) 36, 181, 588, 1017, 2599
Bso31I GGTCTC 2 cut(s) 387, 1354
Bsp1286I GDGCHC 3 cut(s) 219, 811, 2715
Bsp13I TCCGGA 1 cut(s) 1639
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 5 cut(s) 100, 163, 964, 1199, 2380
Bsp1720I GCTNAGC 1 cut(s) 2437
Bsp19I CCATGG 2 cut(s) 254, 434
BspACI CCGC 2 cut(s) 370, 1328
BspANI GGCC 5 cut(s) 36, 181, 588, 1017, 2599
BspDI ATCGAT 1 cut(s) 2251
BspEI TCCGGA 1 cut(s) 1639
BspLI GGNNCC 7 cut(s) 440, 486, 1332, 1578, 1840, 1848, 2598
BspMAI CTGCAG 2 cut(s) 1860, 2626
BspOI GCTAGC 2 cut(s) 2006, 2636
BspT107I GGYRCC 1 cut(s) 1576
BspTNI GGTCTC 2 cut(s) 387, 1354
BsrDI GCAATG 3 cut(s) 1314, 1663, 2557
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
BssECI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BssMI GATC 5 cut(s) 100, 163, 964, 1199, 2380
BssNI GRCGYC 1 cut(s) 316
BssT1I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Bst2UI CCWGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
Bst4CI ACNGT 4 cut(s) 1076, 1129, 1231, 2083
Bst6I CTCTTC 2 cut(s) 409, 1548
BstACI GRCGYC 1 cut(s) 316
BstAPI GCANNNNNTGC 4 cut(s) 1325, 1583, 1915, 2321
BstAUI TGTACA 1 cut(s) 1953
BstBAI YACGTR 1 cut(s) 1412
BstC8I GCNNGC 6 cut(s) 372, 1527, 2004, 2622, 2634, 2638
BstDSI CCRYGG 2 cut(s) 254, 434
BstF5I GGATG 5 cut(s) 372, 1330, 1651, 1802, 2579
BstH2I RGCGCY 1 cut(s) 2177
BstHHI GCGC 1 cut(s) 2176
BstKTI GATC 5 cut(s) 103, 166, 967, 1202, 2383
BstMAI GTCTC 7 cut(s) 19, 387, 675, 1354, 2008, 2146, 2763
BstMBI GATC 5 cut(s) 100, 163, 964, 1199, 2380
BstMWI GCNNNNNNNGC 8 cut(s) 380, 1325, 1565, 1574, 1583, 1915, 2321, 2477
BstNI CCWGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
BstNSI RCATGY 3 cut(s) 721, 1165, 2640
BstPAI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
BstSCI CCNGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
BstSFI CTRYAG 4 cut(s) 1856, 2146, 2177, 2622
BstSLI GKGCMC 2 cut(s) 219, 811
BstSNI TACGTA 1 cut(s) 1412
BstV1I GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BstX2I RGATCY 1 cut(s) 2380
BstYI RGATCY 1 cut(s) 2380
Bsu15I ATCGAT 1 cut(s) 2251
Bsu36I CCTNAGG 1 cut(s) 66
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 5 cut(s) 36, 181, 588, 1017, 2599
BsuTUI ATCGAT 1 cut(s) 2251
BtgI CCRYGG 2 cut(s) 254, 434
BtgZI GCGATG 1 cut(s) 2685
BtrI CACGTC 1 cut(s) 2462
BtsCI GGATG 5 cut(s) 372, 1330, 1651, 1802, 2579
BtsI GCAGTG 3 cut(s) 273, 332, 2090
BtsIMutI CAGTG 7 cut(s) 88, 273, 332, 828, 921, 2090, 2243
Cac8I GCNNGC 6 cut(s) 372, 1527, 2004, 2622, 2634, 2638
CaiI CAGNNNCTG 1 cut(s) 2681
CfoI GCGC 1 cut(s) 2176
Cfr13I GGNCC 8 cut(s) 401, 431, 833, 989, 1838, 1921, 1976, 2597
ClaI ATCGAT 1 cut(s) 2251
CseI GACGC 3 cut(s) 324, 531, 2025
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 8 cut(s) 249, 575, 621, 858, 1155, 1413, 1954, 2163
CspCI CAANNNNNGTGG 4 cut(s) 262, 297, 956, 991
CviQI GTAC 8 cut(s) 249, 575, 621, 858, 1155, 1413, 1954, 2163
DpnI GATC 5 cut(s) 102, 165, 966, 1201, 2382
DpnII GATC 5 cut(s) 100, 163, 964, 1199, 2380
DraI TTTAAA 2 cut(s) 357, 1572
DraIII CACNNNGTG 1 cut(s) 539
DriI GACNNNNNGTC 1 cut(s) 2211
Eam1104I CTCTTC 2 cut(s) 409, 1548
Eam1105I GACNNNNNGTC 1 cut(s) 2211
EarI CTCTTC 2 cut(s) 409, 1548
Eco105I TACGTA 1 cut(s) 1412
Eco130I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Eco147I AGGCCT 1 cut(s) 1017
Eco31I GGTCTC 2 cut(s) 387, 1354
Eco32I GATATC 1 cut(s) 2359
Eco47I GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
Eco57I CTGAAG 2 cut(s) 1004, 1581
Eco81I CCTNAGG 1 cut(s) 66
EcoRII CCWGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
EcoRV GATATC 1 cut(s) 2359
EcoT14I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Esp3I CGTCTC 1 cut(s) 2008
FalI AAGNNNNNCTT 2 cut(s) 2324, 2356
FaqI GGGAC 4 cut(s) 437, 728, 1824, 2245
FauI CCCGC 1 cut(s) 363
FauNDI CATATG 2 cut(s) 1366, 2350
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
FokI GGATG 5 cut(s) 379, 1337, 1658, 1789, 2566
Fsp4HI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
GlaI GCGC 1 cut(s) 2175
GluI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
GsaI CCCAGC 1 cut(s) 2503
GsuI CTGGAG 2 cut(s) 411, 2530
HaeII RGCGCY 1 cut(s) 2177
HaeIII GGCC 5 cut(s) 36, 181, 588, 1017, 2599
HapII CCGG 2 cut(s) 1640, 2762
HgaI GACGC 3 cut(s) 324, 531, 2025
HhaI GCGC 1 cut(s) 2176
Hin1I GRCGYC 1 cut(s) 316
Hin6I GCGC 1 cut(s) 2174
HinP1I GCGC 1 cut(s) 2174
HincII GTYRAC 3 cut(s) 1426, 2088, 2532
HindII GTYRAC 3 cut(s) 1426, 2088, 2532
HindIII AAGCTT 1 cut(s) 1958
HpaII CCGG 2 cut(s) 1640, 2762
HphI GGTGA 4 cut(s) 1017, 2366, 2738, 2776
Hpy188III TCNNGA 7 cut(s) 429, 992, 1250, 1628, 1640, 2307, 2384
Hpy99I CGWCG 3 cut(s) 95, 1947, 2466
HpyCH4III ACNGT 4 cut(s) 1076, 1129, 1231, 2083
HpyCH4IV ACGT 5 cut(s) 445, 1297, 1411, 2415, 2461
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 1325, 1565, 1574, 1583, 1915, 2321, 2477
HpySE526I ACGT 5 cut(s) 445, 1297, 1411, 2415, 2461
Hsp92I GRCGYC 1 cut(s) 316
HspAI GCGC 1 cut(s) 2174
Kpn2I TCCGGA 1 cut(s) 1639
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 5 cut(s) 100, 163, 964, 1199, 2380
LmnI GCTCC 5 cut(s) 438, 691, 944, 1336, 1852
Lsp1109I GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
MabI ACCWGGT 1 cut(s) 28
MaeII ACGT 5 cut(s) 445, 1297, 1411, 2415, 2461
MaeIII GTNAC 4 cut(s) 612, 919, 1023, 2540
MalI GATC 5 cut(s) 102, 165, 966, 1201, 2382
MboI GATC 5 cut(s) 100, 163, 964, 1199, 2380
MboII GAAGA 9 cut(s) 426, 636, 770, 855, 1565, 1752, 1785, 1873, 2390
MfeI CAATTG 2 cut(s) 479, 606
MflI RGATCY 1 cut(s) 2380
MhlI GDGCHC 3 cut(s) 219, 811, 2715
MlyI GAGTC 6 cut(s) 230, 419, 778, 1277, 2227, 2780
MmeI TCCRAC 3 cut(s) 1111, 2355, 2391
Mph1103I ATGCAT 1 cut(s) 556
MroI TCCGGA 1 cut(s) 1639
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
MspA1I CMGCKG 3 cut(s) 2036, 2609, 2660
MspI CCGG 2 cut(s) 1640, 2762
MspR9I CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
MunI CAATTG 2 cut(s) 479, 606
Mva1269I GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
MvaI CCWGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
MwoI GCNNNNNNNGC 8 cut(s) 380, 1325, 1565, 1574, 1583, 1915, 2321, 2477
NcoI CCATGG 2 cut(s) 254, 434
NdeI CATATG 2 cut(s) 1366, 2350
NdeII GATC 5 cut(s) 100, 163, 964, 1199, 2380
NheI GCTAGC 2 cut(s) 2002, 2632
NlaIV GGNNCC 7 cut(s) 440, 486, 1332, 1578, 1840, 1848, 2598
NmuCI GTSAC 2 cut(s) 919, 1023
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 3 cut(s) 721, 1165, 2640
PaeI GCATGC 1 cut(s) 2640
PceI AGGCCT 1 cut(s) 1017
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
PdmI GAANNNNTTC 1 cut(s) 762
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 3 cut(s) 545, 568, 835
PkrI GCNGC 7 cut(s) 1141, 1330, 1567, 2008, 2035, 2659, 2662
PleI GAGTC 6 cut(s) 230, 419, 777, 1276, 2227, 2779
PpsI GAGTC 6 cut(s) 230, 419, 777, 1276, 2227, 2779
Ppu21I YACGTR 1 cut(s) 1412
PscI ACATGT 1 cut(s) 717
PshAI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
PshBI ATTAAT 1 cut(s) 1221
PsiI TTATAA 2 cut(s) 173, 267
Psp6I CCWGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
PspFI CCCAGC 1 cut(s) 2499
PspGI CCWGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
PspN4I GGNNCC 7 cut(s) 440, 486, 1332, 1578, 1840, 1848, 2598
PspPI GGNCC 8 cut(s) 401, 431, 833, 989, 1838, 1921, 1976, 2597
PstI CTGCAG 2 cut(s) 1860, 2626
PstNI CAGNNNCTG 1 cut(s) 2681
PsuI RGATCY 1 cut(s) 2380
PvuII CAGCTG 3 cut(s) 2036, 2609, 2660
RsaI GTAC 8 cut(s) 250, 576, 622, 859, 1156, 1414, 1955, 2164
RsaNI GTAC 8 cut(s) 249, 575, 621, 858, 1155, 1413, 1954, 2163
SaqAI TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
SatI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
Sau3AI GATC 5 cut(s) 100, 163, 964, 1199, 2380
Sau96I GGNCC 8 cut(s) 401, 431, 833, 989, 1838, 1921, 1976, 2597
SchI GAGTC 6 cut(s) 230, 419, 778, 1277, 2227, 2780
ScrFI CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
SduI GDGCHC 3 cut(s) 219, 811, 2715
SexAI ACCWGGT 1 cut(s) 28
SfcI CTRYAG 4 cut(s) 1856, 2146, 2177, 2622
SinI GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
SmiI ATTTAAAT 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 1961
SmoI CTYRAG 1 cut(s) 1961
SnaBI TACGTA 1 cut(s) 1412
SphI GCATGC 1 cut(s) 2640
SseBI AGGCCT 1 cut(s) 1017
SsiI CCGC 2 cut(s) 370, 1328
SspI AATATT 1 cut(s) 1666
StuI AGGCCT 1 cut(s) 1017
StyD4I CCNGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
StyI CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
SwaI ATTTAAAT 1 cut(s) 357
TaaI ACNGT 4 cut(s) 1076, 1129, 1231, 2083
TaiI ACGT 5 cut(s) 448, 1300, 1414, 2418, 2464
TaqI TCGA 7 cut(s) 103, 162, 340, 351, 745, 1055, 2251
TaqII GACCGA 1 cut(s) 2571
TatI WGTACW 5 cut(s) 248, 857, 1154, 1953, 2162
TauI GCSGC 1 cut(s) 1331
Tru1I TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
Tru9I TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
TscAI CASTG 7 cut(s) 88, 280, 339, 835, 928, 2097, 2250
TseFI GTSAC 2 cut(s) 919, 1023
TseI GCWGC 6 cut(s) 1139, 1565, 2006, 2033, 2657, 2660
Tsp45I GTSAC 2 cut(s) 919, 1023
TspDTI ATGAA 9 cut(s) 861, 893, 1053, 1125, 1272, 1338, 1707, 1769, 2345
TspRI CASTG 7 cut(s) 88, 280, 339, 835, 928, 2097, 2250
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 807
VpaK11BI GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
VspI ATTAAT 1 cut(s) 1221
XapI RAATTY 3 cut(s) 1481, 1873, 2519
XceI RCATGY 3 cut(s) 721, 1165, 2640
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmaJI CCTAGG 2 cut(s) 1028, 2591
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.