zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27700 AT3G27700 |
| fragaria_vesca | FvH4_6g51350 |
| malus_domestica | MD09G1028400.v1.1 MD17G1029900.v1.1 |
| prunus_persica | Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1 |
| pyrus_communis | pycom111g02240 pycom17g02730 |
| rosa_chinensis | RchiOBHm_Chr2g0173051 |
| rosa_laevigata | RLG00000022152 |
| rosa_multiflora | Rmu_sc0011236.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079290 |
| rosa_rugosa | Rorug02G0564800 |
| rosa_samantha | Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600 |
| rosa_wichuraiana | Rw2G052940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2318 |
| AarI | CACCTGC | 2 cut(s) | 998, 2734 |
| Acc36I | ACCTGC | 3 cut(s) | 998, 1843, 2734 |
| AccB1I | GGYRCC | 1 cut(s) | 1609 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 62 |
| AccI | GTMKAC | 1 cut(s) | 154 |
| AccII | CGCG | 2 cut(s) | 468, 1411 |
| AccIII | TCCGGA | 1 cut(s) | 1706 |
| AciI | CCGC | 2 cut(s) | 468, 2120 |
| AclI | AACGTT | 1 cut(s) | 10 |
| AclWI | GGATC | 7 cut(s) | 37, 89, 460, 573, 586, 883, 1247 |
| AcsI | RAATTY | 5 cut(s) | 323, 1142, 1264, 1514, 2546 |
| AcuI | CTGAAG | 3 cut(s) | 1254, 1614, 1766 |
| AcyI | GRCGYC | 1 cut(s) | 337 |
| AdeI | CACNNNGTG | 1 cut(s) | 575 |
| AfaI | GTAC | 5 cut(s) | 283, 997, 1186, 1447, 2197 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 62, 431, 1337, 1679, 1962, 2060, 2251 |
| AflIII | ACRYGT | 1 cut(s) | 1409 |
| AgsI | TTSAA | 9 cut(s) | 481, 794, 820, 1221, 1511, 1578, 1921, 2230, 2281 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2244 |
| AjnI | CCWGG | 7 cut(s) | 61, 409, 424, 581, 604, 1097, 2679 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 664, 696 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2159, 2191 |
| Alw21I | GWGCWC | 3 cut(s) | 367, 571, 847 |
| Alw26I | GTCTC | 6 cut(s) | 408, 711, 746, 1497, 2018, 2044 |
| Alw44I | GTGCAC | 2 cut(s) | 567, 843 |
| AlwI | GGATC | 7 cut(s) | 37, 89, 460, 573, 586, 883, 1247 |
| Ama87I | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| Aor13HI | TCCGGA | 1 cut(s) | 1706 |
| AoxI | GGCC | 6 cut(s) | 212, 868, 1084, 1878, 2264, 2624 |
| ApaLI | GTGCAC | 2 cut(s) | 567, 843 |
| ApoI | RAATTY | 5 cut(s) | 323, 1142, 1264, 1514, 2546 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspS9I | GGNCC | 9 cut(s) | 422, 470, 869, 1871, 1879, 2012, 2255, 2264, 2624 |
| AsuC2I | CCSGG | 5 cut(s) | 341, 342, 392, 872, 873 |
| AsuHPI | GGTGA | 4 cut(s) | 1086, 1377, 1852, 2370 |
| AsuNHI | GCTAGC | 1 cut(s) | 1951 |
| AvaI | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| AvaII | GGWCC | 5 cut(s) | 422, 470, 1871, 2012, 2255 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| AxyI | CCTNAGG | 2 cut(s) | 99, 2619 |
| BaeGI | GKGCMC | 4 cut(s) | 571, 761, 847, 2538 |
| BamHI | GGATCC | 1 cut(s) | 578 |
| BanI | GGYRCC | 1 cut(s) | 1609 |
| BanII | GRGCYC | 1 cut(s) | 518 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 3 cut(s) | 367, 571, 847 |
| BccI | CCATC | 5 cut(s) | 527, 892, 959, 1552, 2614 |
| BceAI | ACGGC | 1 cut(s) | 2475 |
| BciT130I | CCWGG | 7 cut(s) | 63, 411, 426, 583, 606, 1099, 2681 |
| BclI | TGATCA | 2 cut(s) | 196, 1033 |
| BcnI | CCSGG | 5 cut(s) | 341, 342, 392, 872, 873 |
| BcoDI | GTCTC | 6 cut(s) | 408, 711, 746, 1497, 2018, 2044 |
| BfmI | CTRYAG | 3 cut(s) | 1788, 2210, 2234 |
| BfuAI | ACCTGC | 3 cut(s) | 998, 1843, 2734 |
| BglII | AGATCT | 2 cut(s) | 487, 2413 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| BlpI | GCTNAGC | 2 cut(s) | 2464, 2643 |
| Bme18I | GGWCC | 5 cut(s) | 422, 470, 1871, 2012, 2255 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2244 |
| BmeT110I | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| BmgT120I | GGNCC | 9 cut(s) | 422, 470, 869, 1871, 1879, 2012, 2255, 2264, 2624 |
| BmrI | ACTGGG | 3 cut(s) | 808, 863, 1689 |
| BmtI | GCTAGC | 1 cut(s) | 1955 |
| BmuI | ACTGGG | 3 cut(s) | 808, 863, 1689 |
| BoxI | GACNNNNGTC | 4 cut(s) | 420, 953, 1974, 2301 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1414, 1446 |
| BpmI | CTGGAG | 1 cut(s) | 432 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2464, 2643 |
| BpuEI | CTTGAG | 3 cut(s) | 258, 997, 2015 |
| BpuMI | CCSGG | 5 cut(s) | 341, 342, 392, 872, 873 |
| BsaBI | GATNNNNATC | 2 cut(s) | 132, 378 |
| BsaHI | GRCGYC | 1 cut(s) | 337 |
| BsaI | GGTCTC | 2 cut(s) | 408, 2044 |
| BsaWI | WCCGGW | 4 cut(s) | 563, 1706, 2177, 2710 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1309, 1339, 1675, 1705 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 62, 431, 1337, 1679, 1962, 2060, 2251 |
| Bse21I | CCTNAGG | 2 cut(s) | 99, 2619 |
| Bse3DI | GCAATG | 2 cut(s) | 2133, 2584 |
| Bse8I | GATNNNNATC | 2 cut(s) | 132, 378 |
| BseAI | TCCGGA | 1 cut(s) | 1706 |
| BseBI | CCWGG | 7 cut(s) | 63, 411, 426, 583, 606, 1099, 2681 |
| BseGI | GGATG | 5 cut(s) | 519, 757, 896, 2128, 2761 |
| BseJI | GATNNNNATC | 2 cut(s) | 132, 378 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 62, 431, 1337, 1679, 1962, 2060, 2251 |
| BseMI | GCAATG | 2 cut(s) | 2133, 2584 |
| BseMII | CTCAG | 9 cut(s) | 90, 185, 498, 676, 757, 1484, 2127, 2478, 2657 |
| BseRI | GAGGAG | 4 cut(s) | 116, 740, 2092, 2177 |
| BseSI | GKGCMC | 4 cut(s) | 571, 761, 847, 2538 |
| BseYI | CCCAGC | 2 cut(s) | 539, 2526 |
| Bsh1236I | CGCG | 2 cut(s) | 468, 1411 |
| Bsh1285I | CGRYCG | 1 cut(s) | 136 |
| BshFI | GGCC | 6 cut(s) | 214, 870, 1086, 1880, 2266, 2626 |
| BshNI | GGYRCC | 1 cut(s) | 1609 |
| BsiEI | CGRYCG | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 3 cut(s) | 367, 571, 847 |
| BsiHKCI | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| BsiSI | CCGG | 7 cut(s) | 341, 391, 564, 872, 1707, 2178, 2711 |
| BslFI | GGGAC | 4 cut(s) | 458, 1696, 1857, 2268 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 62, 431, 1337, 1679, 1962, 2060, 2251 |
| BsmAI | GTCTC | 6 cut(s) | 408, 711, 746, 1497, 2018, 2044 |
| BsmFI | GGGAC | 4 cut(s) | 458, 1696, 1857, 2268 |
| BsmI | GAATGC | 3 cut(s) | 592, 1464, 1668 |
| BsnI | GGCC | 6 cut(s) | 214, 870, 1086, 1880, 2266, 2626 |
| Bso31I | GGTCTC | 2 cut(s) | 408, 2044 |
| BsoBI | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| Bsp1286I | GDGCHC | 6 cut(s) | 367, 518, 571, 761, 847, 2538 |
| Bsp13I | TCCGGA | 1 cut(s) | 1706 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2464, 2643 |
| Bsp19I | CCATGG | 4 cut(s) | 287, 624, 1374, 1717 |
| BspACI | CCGC | 2 cut(s) | 468, 2120 |
| BspANI | GGCC | 6 cut(s) | 214, 870, 1086, 1880, 2266, 2626 |
| BspCNI | CTCAG | 9 cut(s) | 91, 184, 497, 675, 756, 1483, 2128, 2477, 2656 |
| BspEI | TCCGGA | 1 cut(s) | 1706 |
| BspFNI | CGCG | 2 cut(s) | 468, 1411 |
| BspMAI | CTGCAG | 3 cut(s) | 1792, 2214, 2238 |
| BspMI | ACCTGC | 3 cut(s) | 998, 1843, 2734 |
| BspOI | GCTAGC | 1 cut(s) | 1955 |
| BspPI | GGATC | 7 cut(s) | 37, 89, 460, 573, 586, 883, 1247 |
| BspT107I | GGYRCC | 1 cut(s) | 1609 |
| BspTNI | GGTCTC | 2 cut(s) | 408, 2044 |
| BsrDI | GCAATG | 2 cut(s) | 2133, 2584 |
| BssNI | GRCGYC | 1 cut(s) | 337 |
| BssT1I | CCWWGG | 9 cut(s) | 287, 418, 473, 624, 1293, 1374, 1717, 1875, 2777 |
| Bst2UI | CCWGG | 7 cut(s) | 63, 411, 426, 583, 606, 1099, 2681 |
| Bst4CI | ACNGT | 4 cut(s) | 1058, 2303, 2401, 2519 |
| Bst6I | CTCTTC | 3 cut(s) | 430, 1500, 1581 |
| BstACI | GRCGYC | 1 cut(s) | 337 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 1013, 1616, 1823, 1948, 2132, 2354 |
| BstC8I | GCNNGC | 5 cut(s) | 650, 1088, 1953, 2040, 2133 |
| BstDSI | CCRYGG | 4 cut(s) | 287, 624, 1374, 1717 |
| BstEII | GGTNACC | 1 cut(s) | 1628 |
| BstF5I | GGATG | 5 cut(s) | 519, 757, 896, 2128, 2761 |
| BstFNI | CGCG | 2 cut(s) | 468, 1411 |
| BstMAI | GTCTC | 6 cut(s) | 408, 711, 746, 1497, 2018, 2044 |
| BstMCI | CGRYCG | 1 cut(s) | 136 |
| BstNI | CCWGG | 7 cut(s) | 63, 411, 426, 583, 606, 1099, 2681 |
| BstNSI | RCATGY | 2 cut(s) | 1195, 2135 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 420, 953, 1974, 2301 |
| BstPI | GGTNACC | 1 cut(s) | 1628 |
| BstSFI | CTRYAG | 3 cut(s) | 1788, 2210, 2234 |
| BstSLI | GKGCMC | 4 cut(s) | 571, 761, 847, 2538 |
| BstUI | CGCG | 2 cut(s) | 468, 1411 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 4 cut(s) | 487, 578, 875, 2413 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1754 |
| BstYI | RGATCY | 4 cut(s) | 487, 578, 875, 2413 |
| Bsu36I | CCTNAGG | 2 cut(s) | 99, 2619 |
| BsuRI | GGCC | 6 cut(s) | 214, 870, 1086, 1880, 2266, 2626 |
| BtgI | CCRYGG | 4 cut(s) | 287, 624, 1374, 1717 |
| BtsCI | GGATG | 5 cut(s) | 519, 757, 896, 2128, 2761 |
| BtsI | GCAGTG | 1 cut(s) | 353 |
| BtsIMutI | CAGTG | 6 cut(s) | 306, 353, 894, 957, 1743, 1839 |
| BveI | ACCTGC | 3 cut(s) | 998, 1843, 2734 |
| Cac8I | GCNNGC | 5 cut(s) | 650, 1088, 1953, 2040, 2133 |
| Cfr13I | GGNCC | 9 cut(s) | 422, 470, 869, 1871, 1879, 2012, 2255, 2264, 2624 |
| Cfr9I | CCCGGG | 2 cut(s) | 340, 871 |
| CseI | GACGC | 1 cut(s) | 345 |
| Csp6I | GTAC | 5 cut(s) | 282, 996, 1185, 1446, 2196 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1025, 1060 |
| CviAII | CATG | 9 cut(s) | 288, 456, 625, 770, 1192, 1375, 1718, 1814, 2132 |
| CviQI | GTAC | 5 cut(s) | 282, 996, 1185, 1446, 2196 |
| DraI | TTTAAA | 2 cut(s) | 378, 1605 |
| DraIII | CACNNNGTG | 1 cut(s) | 575 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2244 |
| Eam1104I | CTCTTC | 3 cut(s) | 430, 1500, 1581 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2244 |
| EarI | CTCTTC | 3 cut(s) | 430, 1500, 1581 |
| Eco130I | CCWWGG | 9 cut(s) | 287, 418, 473, 624, 1293, 1374, 1717, 1875, 2777 |
| Eco147I | AGGCCT | 1 cut(s) | 1086 |
| Eco24I | GRGCYC | 1 cut(s) | 518 |
| Eco31I | GGTCTC | 2 cut(s) | 408, 2044 |
| Eco47I | GGWCC | 5 cut(s) | 422, 470, 1871, 2012, 2255 |
| Eco57I | CTGAAG | 3 cut(s) | 1254, 1614, 1766 |
| Eco81I | CCTNAGG | 2 cut(s) | 99, 2619 |
| Eco88I | CYCGRG | 5 cut(s) | 340, 360, 871, 2261, 2808 |
| Eco91I | GGTNACC | 1 cut(s) | 1628 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1879 |
| EcoO65I | GGTNACC | 1 cut(s) | 1628 |
| EcoRI | GAATTC | 1 cut(s) | 1142 |
| EcoRII | CCWGG | 7 cut(s) | 61, 409, 424, 581, 604, 1097, 2679 |
| EcoT14I | CCWWGG | 9 cut(s) | 287, 418, 473, 624, 1293, 1374, 1717, 1875, 2777 |
| EcoT22I | ATGCAT | 4 cut(s) | 592, 1819, 2133, 2821 |
| EcoT38I | GRGCYC | 1 cut(s) | 518 |
| ErhI | CCWWGG | 9 cut(s) | 287, 418, 473, 624, 1293, 1374, 1717, 1875, 2777 |
| FaeI | CATG | 9 cut(s) | 291, 459, 628, 773, 1195, 1378, 1721, 1817, 2135 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2357, 2389 |
| FaqI | GGGAC | 4 cut(s) | 458, 1696, 1857, 2268 |
| FatI | CATG | 9 cut(s) | 287, 455, 624, 769, 1191, 1374, 1717, 1813, 2131 |
| FbaI | TGATCA | 2 cut(s) | 196, 1033 |
| FblI | GTMKAC | 1 cut(s) | 154 |
| FokI | GGATG | 5 cut(s) | 506, 764, 883, 2135, 2768 |
| FriOI | GRGCYC | 1 cut(s) | 518 |
| GsaI | CCCAGC | 2 cut(s) | 543, 2530 |
| GsuI | CTGGAG | 1 cut(s) | 432 |
| HaeIII | GGCC | 6 cut(s) | 214, 870, 1086, 1880, 2266, 2626 |
| HapII | CCGG | 7 cut(s) | 341, 391, 564, 872, 1707, 2178, 2711 |
| HgaI | GACGC | 1 cut(s) | 345 |
| Hin1I | GRCGYC | 1 cut(s) | 337 |
| Hin1II | CATG | 9 cut(s) | 291, 459, 628, 773, 1195, 1378, 1721, 1817, 2135 |
| HincII | GTYRAC | 1 cut(s) | 1315 |
| HindII | GTYRAC | 1 cut(s) | 1315 |
| HindIII | AAGCTT | 1 cut(s) | 1991 |
| HpaII | CCGG | 7 cut(s) | 341, 391, 564, 872, 1707, 2178, 2711 |
| HphI | GGTGA | 4 cut(s) | 1086, 1377, 1852, 2370 |
| Hpy166II | GTNNAC | 8 cut(s) | 155, 284, 569, 845, 1178, 1315, 1556, 2198 |
| Hpy188III | TCNNGA | 8 cut(s) | 98, 802, 1061, 1661, 1673, 1707, 2417, 2697 |
| Hpy8I | GTNNAC | 8 cut(s) | 155, 284, 569, 845, 1178, 1315, 1556, 2198 |
| Hpy99I | CGWCG | 1 cut(s) | 1980 |
| HpyAV | CCTTC | 8 cut(s) | 87, 100, 1234, 1297, 1915, 2280, 2359, 2525 |
| HpyCH4III | ACNGT | 4 cut(s) | 1058, 2303, 2401, 2519 |
| HpyCH4IV | ACGT | 2 cut(s) | 10, 2761 |
| HpySE526I | ACGT | 2 cut(s) | 10, 2761 |
| Hsp92I | GRCGYC | 1 cut(s) | 337 |
| Hsp92II | CATG | 9 cut(s) | 291, 459, 628, 773, 1195, 1378, 1721, 1817, 2135 |
| Kpn2I | TCCGGA | 1 cut(s) | 1706 |
| Ksp22I | TGATCA | 2 cut(s) | 196, 1033 |
| LmnI | GCTCC | 7 cut(s) | 459, 521, 727, 766, 1912, 2105, 2119 |
| MaeII | ACGT | 2 cut(s) | 10, 2761 |
| MaeIII | GTNAC | 5 cut(s) | 202, 955, 1412, 1628, 1723 |
| MflI | RGATCY | 4 cut(s) | 487, 578, 875, 2413 |
| MhlI | GDGCHC | 6 cut(s) | 367, 518, 571, 761, 847, 2538 |
| MluI | ACGCGT | 1 cut(s) | 1409 |
| MlyI | GAGTC | 6 cut(s) | 263, 538, 814, 1499, 2777, 2810 |
| MmeI | TCCRAC | 2 cut(s) | 1965, 2320 |
| Mph1103I | ATGCAT | 4 cut(s) | 592, 1819, 2133, 2821 |
| MroI | TCCGGA | 1 cut(s) | 1706 |
| MseI | TTAA | 6 cut(s) | 41, 377, 686, 929, 1458, 1604 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1196 |
| MspA1I | CMGCKG | 1 cut(s) | 1169 |
| MspI | CCGG | 7 cut(s) | 341, 391, 564, 872, 1707, 2178, 2711 |
| Mva1269I | GAATGC | 3 cut(s) | 592, 1464, 1668 |
| MvaI | CCWGG | 7 cut(s) | 63, 411, 426, 583, 606, 1099, 2681 |
| MvnI | CGCG | 2 cut(s) | 468, 1411 |
| NciI | CCSGG | 5 cut(s) | 341, 342, 392, 872, 873 |
| NcoI | CCATGG | 4 cut(s) | 287, 624, 1374, 1717 |
| NheI | GCTAGC | 1 cut(s) | 1951 |
| NlaIII | CATG | 9 cut(s) | 291, 459, 628, 773, 1195, 1378, 1721, 1817, 2135 |
| NmeAIII | GCCGAG | 1 cut(s) | 2791 |
| NmuCI | GTSAC | 2 cut(s) | 202, 955 |
| NsiI | ATGCAT | 4 cut(s) | 592, 1819, 2133, 2821 |
| NspI | RCATGY | 2 cut(s) | 1195, 2135 |
| PaeI | GCATGC | 1 cut(s) | 2135 |
| PaeR7I | CTCGAG | 1 cut(s) | 360 |
| PaqCI | CACCTGC | 2 cut(s) | 998, 2734 |
| PceI | AGGCCT | 1 cut(s) | 1086 |
| PctI | GAATGC | 3 cut(s) | 592, 1464, 1668 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 62 |
| PfoI | TCCNGGA | 2 cut(s) | 409, 581 |
| Ple19I | CGATCG | 1 cut(s) | 136 |
| PleI | GAGTC | 6 cut(s) | 263, 537, 813, 1498, 2776, 2809 |
| PpsI | GAGTC | 6 cut(s) | 263, 537, 813, 1498, 2776, 2809 |
| PshAI | GACNNNNGTC | 4 cut(s) | 420, 953, 1974, 2301 |
| PsiI | TTATAA | 1 cut(s) | 2318 |
| Psp1406I | AACGTT | 1 cut(s) | 10 |
| Psp6I | CCWGG | 7 cut(s) | 61, 409, 424, 581, 604, 1097, 2679 |
| PspEI | GGTNACC | 1 cut(s) | 1628 |
| PspFI | CCCAGC | 2 cut(s) | 539, 2526 |
| PspGI | CCWGG | 7 cut(s) | 61, 409, 424, 581, 604, 1097, 2679 |
| PspPI | GGNCC | 9 cut(s) | 422, 470, 869, 1871, 1879, 2012, 2255, 2264, 2624 |
| PspXI | VCTCGAGB | 1 cut(s) | 360 |
| PstI | CTGCAG | 3 cut(s) | 1792, 2214, 2238 |
| PsuI | RGATCY | 4 cut(s) | 487, 578, 875, 2413 |
| PvuI | CGATCG | 1 cut(s) | 136 |
| PvuII | CAGCTG | 1 cut(s) | 1169 |
| RsaI | GTAC | 5 cut(s) | 283, 997, 1186, 1447, 2197 |
| RsaNI | GTAC | 5 cut(s) | 282, 996, 1185, 1446, 2196 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SaqAI | TTAA | 6 cut(s) | 41, 377, 686, 929, 1458, 1604 |
| Sau96I | GGNCC | 9 cut(s) | 422, 470, 869, 1871, 1879, 2012, 2255, 2264, 2624 |
| SchI | GAGTC | 6 cut(s) | 263, 538, 814, 1499, 2777, 2810 |
| SduI | GDGCHC | 6 cut(s) | 367, 518, 571, 761, 847, 2538 |
| SfcI | CTRYAG | 3 cut(s) | 1788, 2210, 2234 |
| Sfr274I | CTCGAG | 1 cut(s) | 360 |
| SinI | GGWCC | 5 cut(s) | 422, 470, 1871, 2012, 2255 |
| SlaI | CTCGAG | 1 cut(s) | 360 |
| SmaI | CCCGGG | 2 cut(s) | 342, 873 |
| SmiI | ATTTAAAT | 1 cut(s) | 378 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SmlI | CTYRAG | 4 cut(s) | 273, 360, 976, 1994 |
| SmoI | CTYRAG | 4 cut(s) | 273, 360, 976, 1994 |
| SphI | GCATGC | 1 cut(s) | 2135 |
| SseBI | AGGCCT | 1 cut(s) | 1086 |
| SsiI | CCGC | 2 cut(s) | 468, 2120 |
| StuI | AGGCCT | 1 cut(s) | 1086 |
| StyI | CCWWGG | 9 cut(s) | 287, 418, 473, 624, 1293, 1374, 1717, 1875, 2777 |
| SwaI | ATTTAAAT | 1 cut(s) | 378 |
| TaaI | ACNGT | 4 cut(s) | 1058, 2303, 2401, 2519 |
| TaiI | ACGT | 2 cut(s) | 13, 2764 |
| TaqI | TCGA | 7 cut(s) | 24, 136, 361, 723, 833, 1124, 1251 |
| TatI | WGTACW | 3 cut(s) | 281, 1184, 2195 |
| Tru1I | TTAA | 6 cut(s) | 41, 377, 686, 929, 1458, 1604 |
| Tru9I | TTAA | 6 cut(s) | 41, 377, 686, 929, 1458, 1604 |
| TscAI | CASTG | 6 cut(s) | 313, 360, 894, 964, 1743, 1846 |
| TseFI | GTSAC | 2 cut(s) | 202, 955 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 955 |
| TspGWI | ACGGA | 3 cut(s) | 512, 1433, 2234 |
| TspMI | CCCGGG | 2 cut(s) | 340, 871 |
| TspRI | CASTG | 6 cut(s) | 313, 360, 894, 964, 1743, 1846 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 62 |
| VneI | GTGCAC | 2 cut(s) | 567, 843 |
| VpaK11BI | GGWCC | 5 cut(s) | 422, 470, 1871, 2012, 2255 |
| XapI | RAATTY | 5 cut(s) | 323, 1142, 1264, 1514, 2546 |
| XceI | RCATGY | 2 cut(s) | 1195, 2135 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 407 |
| XhoI | CTCGAG | 1 cut(s) | 360 |
| XmaI | CCCGGG | 2 cut(s) | 340, 871 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XmiI | GTMKAC | 1 cut(s) | 154 |
| Zsp2I | ATGCAT | 4 cut(s) | 592, 1819, 2133, 2821 |