Prupe.3G289600_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011914
Physical Location & Seq
Forward (+)
26018709 .. 26020258
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G289600.1

Sequence Viewer

Length: 1128 bp
ATGAATAGCAAAGGCTTACATGGAAAAACAAGCAAGTCTGCTGTCAATGATGATGGTTTGGGCTTGAATGGTCCATATTCTGGTCCTGGTTATCTGGGCGTTGGGACAGCTGCCAATTCACAGAGTACAAGCGTGTCCGTGTGGGTTAGAATTGGCAGTTCAAAAAATTGTATTGAGAGTGAAACTAAGGAAGGTAAGGAGGCATTAGTCAGCATTCAAAATCCACCACGTCAAGGGAAGCGTATCATGGCAGAAGATGGCCCAAAAGCCATGGATTCATCACCCAAGACACATTTTGATCCTACACGTAACATTCGGAAACCATCTCAAAAAGCATTGCGTACTCTATTTGTCAATGGCATTCCCCAGAAGAGCAACAAAAGGGAGGCTCTTCTTTCTCATTTCCAAAAGTTTGGAGAGGTCATTGACATTTATATTCCATTGAATAGTGAACGAGCTTTTGTCCAGTTTTCAAGGAGGGAAGAGGCTGAAGCTGCTTTAAAGGCACCTGATGCTGTAATGGGTAACCGCTTCATCAAGTTGTGGTGGGCTAATCGTGATAGCATTCCTGATGATGGCACAGGCACTGCCAGTAATTTTCCTGGTTTAATTCCACCCCATCCAACAGTTACTAGTATAAGCAAAGATAATCTTCAATCTGCTGCTCCAAAGAGTAGTATTGTCCATACATCTGATGCTTTTCTACCTTCCGCTGATAACTCCAAGCCTGTCATCTCAAATGGTCCCAAGGCCCCACCTTTGCAGAAAAAGCTAGAGAATTTAGAGCAGTTAAAGGAGGAACTTCGCAAGAAACAGGAAATGCTGGACCAGAAACGAAATGACTTTCGTCGCAAATTGGACAAACTTGAGAAACAAGCTACTGGACCCAAGGGTGAGGCAGACATAGAGCAAGCTGCTAAGAGACCCAAAGTGGGAATAACAGCTGATGTTGGTAAAGTTGCTAATCCAAAGTCCTCAAATCCGACTCCTATGGAAGAACTGCATGCTGAGATGACTGATAAAAACAAATGTGTAGAGAACGTTGTCTCCTGTAGTCCAAAAACCAGTACAACTATGGTGCTGCAGCAATCCACTGGCTTGAATAGGGACTCCTTCTCCAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

376

Amino Acids

40.9

Weight (kDa)

9.39

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 2 cut(s) 529, 711
AclI AACGTT 1 cut(s) 1041
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 3 cut(s) 127, 343, 1069
AfiI CCNNNNNNNGG 4 cut(s) 80, 233, 575, 932
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 7 cut(s) 67, 162, 218, 445, 474, 656, 1102
AhlI ACTAGT 1 cut(s) 632
AjiI CACGTC 1 cut(s) 230
AjnI CCWGG 2 cut(s) 85, 601
AloI GAACNNNNNNTCC 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 110, 458, 494, 772, 878, 914, 944
AluI AGCT 7 cut(s) 110, 458, 494, 772, 878, 914, 944
Alw26I GTCTC 2 cut(s) 916, 1051
AlwI GGATC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 259, 750
ApeKI GCWGC 6 cut(s) 110, 494, 662, 914, 1081, 1084
ApoI RAATTY 1 cut(s) 778
AspS9I GGNCC 7 cut(s) 71, 83, 260, 743, 751, 826, 884
AsuHPI GGTGA 2 cut(s) 273, 905
AvaII GGWCC 5 cut(s) 71, 83, 743, 826, 884
BanI GGYRCC 1 cut(s) 505
BbvI GCAGC 6 cut(s) 97, 481, 649, 901, 1068, 1096
BccI CCATC 5 cut(s) 47, 251, 331, 569, 627
BciT130I CCWGG 2 cut(s) 87, 603
BcoDI GTCTC 2 cut(s) 916, 1051
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 633, 773
BfmI CTRYAG 2 cut(s) 1051, 1082
BisI GCNGC 6 cut(s) 111, 495, 663, 915, 1082, 1085
BlsI GCNGC 6 cut(s) 112, 496, 664, 916, 1083, 1086
Bme1390I CCNGG 2 cut(s) 87, 603
Bme18I GGWCC 5 cut(s) 71, 83, 743, 826, 884
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 7 cut(s) 71, 83, 260, 743, 751, 826, 884
BmiI GGNNCC 4 cut(s) 507, 745, 753, 886
BmrFI CCNGG 2 cut(s) 87, 603
BmsI GCATC 2 cut(s) 502, 685
BoxI GACNNNNGTC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 1102
BpuEI CTTGAG 1 cut(s) 887
BsaAI YACGTR 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 3 cut(s) 270, 747, 888
BsaXI ACNNNNNCTCC 3 cut(s) 1031, 1061, 1100
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 233, 575, 932
Bse1I ACTGG 6 cut(s) 466, 591, 886, 1065, 1099, 1119
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 2 cut(s) 87, 603
BseDI CCNNGG 3 cut(s) 270, 747, 888
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 4 cut(s) 80, 233, 575, 932
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 999
BseNI ACTGG 6 cut(s) 466, 591, 886, 1065, 1099, 1119
BseXI GCAGC 6 cut(s) 97, 481, 649, 901, 1068, 1096
BshFI GGCC 2 cut(s) 261, 752
BshNI GGYRCC 1 cut(s) 505
BslFI GGGAC 3 cut(s) 118, 729, 1121
BslI CCNNNNNNNGG 4 cut(s) 80, 233, 575, 932
BsmAI GTCTC 2 cut(s) 916, 1051
BsmFI GGGAC 3 cut(s) 118, 729, 1121
BsmI GAATGC 3 cut(s) 213, 360, 564
BsnI GGCC 2 cut(s) 261, 752
Bso31I GGTCTC 1 cut(s) 916
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 2 cut(s) 529, 711
BspANI GGCC 2 cut(s) 261, 752
BspCNI CTCAG 1 cut(s) 1000
BspLI GGNNCC 4 cut(s) 507, 745, 753, 886
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 2 cut(s) 365, 396
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 6 cut(s) 466, 591, 886, 1065, 1099, 1119
BssECI CCNNGG 3 cut(s) 270, 747, 888
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 3 cut(s) 270, 747, 888
Bst2UI CCWGG 2 cut(s) 87, 603
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 3 cut(s) 365, 396, 477
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 912, 1005
BstDEI CTNAG 3 cut(s) 186, 918, 1008
BstDSI CCRYGG 1 cut(s) 270
BstEII GGTNACC 1 cut(s) 524
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 916, 1051
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 494, 503, 512, 769
BstNI CCWGG 2 cut(s) 87, 603
BstNSI RCATGY 1 cut(s) 1007
BstPAI GACNNNNGTC 1 cut(s) 846
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 85, 601
BstSFI CTRYAG 2 cut(s) 1051, 1082
BstV1I GCAGC 6 cut(s) 97, 481, 649, 901, 1068, 1096
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuRI GGCC 2 cut(s) 261, 752
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 585, 1092, 1126
Cac8I GCNNGC 2 cut(s) 912, 1005
CaiI CAGNNNCTG 1 cut(s) 587
Cfr13I GGNCC 7 cut(s) 71, 83, 260, 743, 751, 826, 884
Csp6I GTAC 3 cut(s) 126, 342, 1068
CviAII CATG 4 cut(s) 20, 247, 271, 1004
CviQI GTAC 3 cut(s) 126, 342, 1068
DdeI CTNAG 3 cut(s) 186, 918, 1008
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DraI TTTAAA 1 cut(s) 501
Eam1104I CTCTTC 3 cut(s) 365, 396, 477
EarI CTCTTC 3 cut(s) 365, 396, 477
Eco130I CCWWGG 3 cut(s) 270, 747, 888
Eco31I GGTCTC 1 cut(s) 916
Eco47I GGWCC 5 cut(s) 71, 83, 743, 826, 884
Eco57I CTGAAG 1 cut(s) 510
Eco91I GGTNACC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 85, 601
EcoT14I CCWWGG 3 cut(s) 270, 747, 888
ErhI CCWWGG 3 cut(s) 270, 747, 888
FaeI CATG 4 cut(s) 23, 250, 274, 1007
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 3 cut(s) 118, 729, 1121
FatI CATG 4 cut(s) 19, 246, 270, 1003
Fnu4HI GCNGC 6 cut(s) 111, 495, 663, 915, 1082, 1085
FokI GGATG 1 cut(s) 606
Fsp4HI GCNGC 6 cut(s) 111, 495, 663, 915, 1082, 1085
FspBI CTAG 2 cut(s) 633, 773
GluI GCNGC 6 cut(s) 111, 495, 663, 915, 1082, 1085
GsuI CTGGAG 1 cut(s) 1102
HaeIII GGCC 2 cut(s) 261, 752
Hin1II CATG 4 cut(s) 23, 250, 274, 1007
HinfI GANTC 3 cut(s) 275, 985, 1109
HphI GGTGA 2 cut(s) 273, 905
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 3 cut(s) 318, 694, 984
Hpy188III TCNNGA 2 cut(s) 557, 569
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 3 cut(s) 185, 717, 1123
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 3 cut(s) 229, 307, 1041
HpyCH4V TGCA 3 cut(s) 763, 1003, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 494, 503, 512, 769
HpyF3I CTNAG 3 cut(s) 186, 918, 1008
HpySE526I ACGT 3 cut(s) 229, 307, 1041
Hsp92II CATG 4 cut(s) 23, 250, 274, 1007
Kzo9I GATC 1 cut(s) 298
LguI GCTCTTC 2 cut(s) 365, 396
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 6 cut(s) 97, 481, 649, 901, 1068, 1096
LweI GCATC 2 cut(s) 502, 685
MaeI CTAG 2 cut(s) 633, 773
MaeII ACGT 3 cut(s) 229, 307, 1041
MaeIII GTNAC 3 cut(s) 308, 524, 628
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 6 cut(s) 266, 382, 383, 494, 644, 1007
MluCI AATT 7 cut(s) 115, 150, 166, 595, 609, 778, 854
MlyI GAGTC 2 cut(s) 979, 1103
MmeI TCCRAC 2 cut(s) 647, 1007
MnlI CCTC 8 cut(s) 193, 379, 412, 471, 478, 790, 889, 985
MseI TTAA 3 cut(s) 500, 608, 791
MspA1I CMGCKG 3 cut(s) 110, 713, 944
MspR9I CCNGG 2 cut(s) 87, 603
Mva1269I GAATGC 3 cut(s) 213, 360, 564
MvaI CCWGG 2 cut(s) 87, 603
MwoI GCNNNNNNNGC 4 cut(s) 494, 503, 512, 769
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 298
NlaIII CATG 4 cut(s) 23, 250, 274, 1007
NlaIV GGNNCC 4 cut(s) 507, 745, 753, 886
NspI RCATGY 1 cut(s) 1007
PaeI GCATGC 1 cut(s) 1007
PciSI GCTCTTC 2 cut(s) 365, 396
PctI GAATGC 3 cut(s) 213, 360, 564
PfeI GAWTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 6 cut(s) 112, 496, 664, 916, 1083, 1086
PleI GAGTC 2 cut(s) 979, 1103
PpsI GAGTC 2 cut(s) 979, 1103
Ppu21I YACGTR 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 846
Psp1406I AACGTT 1 cut(s) 1041
Psp6I CCWGG 2 cut(s) 85, 601
PspEI GGTNACC 1 cut(s) 524
PspGI CCWGG 2 cut(s) 85, 601
PspN4I GGNNCC 4 cut(s) 507, 745, 753, 886
PspPI GGNCC 7 cut(s) 71, 83, 260, 743, 751, 826, 884
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 1 cut(s) 587
PvuII CAGCTG 2 cut(s) 110, 944
RsaI GTAC 3 cut(s) 127, 343, 1069
RsaNI GTAC 3 cut(s) 126, 342, 1068
SapI GCTCTTC 2 cut(s) 365, 396
SaqAI TTAA 3 cut(s) 500, 608, 791
SatI GCNGC 6 cut(s) 111, 495, 663, 915, 1082, 1085
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 7 cut(s) 71, 83, 260, 743, 751, 826, 884
SchI GAGTC 2 cut(s) 979, 1103
ScrFI CCNGG 2 cut(s) 87, 603
SfaNI GCATC 2 cut(s) 502, 685
SfcI CTRYAG 2 cut(s) 1051, 1082
SinI GGWCC 5 cut(s) 71, 83, 743, 826, 884
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
SpeI ACTAGT 1 cut(s) 632
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 7 cut(s) 115, 150, 166, 595, 609, 778, 854
SsiI CCGC 2 cut(s) 529, 711
SspMI CTAG 2 cut(s) 633, 773
StyD4I CCNGG 2 cut(s) 85, 601
StyI CCWWGG 3 cut(s) 270, 747, 888
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 3 cut(s) 232, 310, 1044
TasI AATT 7 cut(s) 115, 150, 166, 595, 609, 778, 854
TatI WGTACW 2 cut(s) 125, 1067
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 500, 608, 791
Tru9I TTAA 3 cut(s) 500, 608, 791
TscAI CASTG 3 cut(s) 592, 1099, 1126
TseI GCWGC 6 cut(s) 110, 494, 662, 914, 1081, 1084
TspDTI ATGAA 3 cut(s) 17, 267, 523
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 3 cut(s) 592, 1099, 1126
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 5 cut(s) 71, 83, 743, 826, 884
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XspI CTAG 2 cut(s) 633, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.