MD09G1028400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011914
Physical Location & Seq
Reverse (-)
1755321 .. 1761158
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1028400.v1.1.491

Sequence Viewer

Length: 2829 bp
ATGAGCCAACTTTCTATTGATTTTGAGGGATCAATGGAGTTAAAAGTTTCATCTCCAAAACCAGGGGGCCTTTCTCCTTCTGATTGCATTAGTGATCCTGAGGAGAAGGAATTAAGTGATGATGATGATGACGATCGAAACCACAAGCATCGTAGACGAGACACTCGTTCTCAGTCTTTGGAGACAGATACTCTTGATCAAGTTATAACAAGGCCATTCAGAAACAGAAACAAACCTTTTGTAAATGGGAACTCTTTTAGGGATAATGACTCTCAAGCGAGTACACCATGGAGAAATCAAAATTCTACTGACTTTTCTGTAAAGTTTGATAAAAGACGCCCAGGGTCAACATCACTGCCTCGAGCACCTTTTGATTTGAATCATAGAATCCGGGCAAACCAAGCATTTCCTGGAGACCTTGGTCCTGGTAGGGGAAGAGGAAGGGACTATGGATCATGGAGCCAACGCGGCCCTAGGTTCAACTCAGATTTTGCTTCTCAAATGGTTCAGCAGGGCTCCATTCGTCCGAGTCTTTTTCCTGGGCGTGGATTGCCAAATGTTTCCAGTGCACAAAGTGGATCCTGGAATGCATTTGGATTGATTCCAGGAATACCAAATGGTTCCATGGATACACTACATTCCATTGGCTTGCAAGGAACACTCCGACCACCAATCCATTCTTCATTAAACATGGGGATTCCTCTCCCAAGATGTAGAGACTTTGAGGAGCGTGGATTTTGTCTTAGAGGAGATATGTGCCCAATGGAGCATGGTGTGAATCGGATCGTTATTGAAGATGTCCAGAGTCTTTCTCAGTTCAACCTCCCTGTGTCGATTCCGAATGCACACTTACTGGGAAAACCCACAGGCCCTGGATCTCTACCATCAGTGAGTGCATCCTCAACTGCATTGCTGAATAGCAAAAGCTTACATGGAAAAACGAGCAAGACTGGTGTCACTGATGATGGCTTGGGCGTGAATGGTTCGTATTCTGGTCCTGGTTATGCAGATGGTGCTGATTTGTATGACCCTGATCAACCCCTGTGGAATAATAACTGTCCCGAAACCTCAAATGCCCTACTAGGCCTGCAATCACCCAGGAATGATGAAACTGAAACCTTGTTGAACGATGCTGATAATGAATTCCCAATTAGAAGTGTTGGGACAGCTTCCAGTTCACAGAGTACAAGCATGTCCGTGTGGGGTAGAATTGGTAGTTCAAAAAGTAGATTAGATGTGAAGGAGAAAATTGAACCTGTAATAAATTCTTCAGATTATATTGAGAGTGATACGAAGGAAGGTAAGGAGGCATTAGTCAACATTCAAACTCCACCACGTCAAGGAAAGCGTATAATTGCAGAGGATGGCCCAAACACCATGGATTCATTACCCAAGACGCCTTTTGATTCCACTCGTAACATCCGGAGACCATCTCAAAAAGCACTGCGTACTCTATTTGTCAATGGCATCCCTCAGAAAAACAACAAAAGGGAGGCTCTTCTTTCTCATTTTCAAAAATTTGGAGAGGTTATTGACATCTATATTCCATCAAATAGTGAACGAGCTTTTATCCAGTTTTCAAGGAGGGAAGAGGCTGAAGCTGCTTTAACAGCACCTGATGCTGTAATGGGTAACCGATTTATCAGGTTGTGGTGGGCTAATCGTGATAGAATTCCTGATGAGGGGACAGGCACTCCCAGTAATTTTTCTGGAACTCCCCATGGTGTAACAACTGGTTCAGTGCCACTGCCACCCCATTCATCTGGTGCTAGTATTAGCAAGGATAATCTTCAATCTGCTGCTCCAAAGGGTAGTATTGTCCATGCATCTGATGCTTCTCTACCTGCCATTGATAACTCCAAGCCTATCACCTCAAATGATCCGAAGGCCCCACCTCTGCAGAAAAAGCTAGATAGTTTAGAGCAGTTGAAGGAGGAACTTCGCAAGAAGCAGGAAATGCTGGCCCAGAAAAGGAATGACTTTCGTCGCCAGTTGGACAAGCTTGAGAAACAAGCTACTGGACCCAAGGGTGAGACAGACACAGAGCAAGCTGCTAAGAGACCCAAAGTGGGAACAACAACCGAAGCTGGTAAAGCTGTGACTCCAAACTCCTCAAATCCTTCTCCTGCGGATGCAATGCATGCTGAAATGACTGATAAGAACAAATCAGGGGAGAGCATTGTGTCCTGTAGTCCAAAACCCAGTACACCTGTGGTGCTGCAGCAATCTCCTAGCTTGAAGCTGCAGACTATCCGTCCATTGGGACCACTGGGTTCACCTTCTCCTTTGAATAGATATAAATTAGACAACCGTCCTACTGGATTTAAAATTCTTCCTCCTTTACCAGCTGGATTTGCAAATGTTGCTATTATGAAGGAACACTTCTCACCCTACGGTGATCTTTCTAATGCGGAATTAGAAGATCTGGAATCCCGTGAAGGTGATAGTGAGTTGGAGAAATCAAAAGATTGCTCAGCTCGTATAACTTTCACAACACGCCGCTCAGCAGAGAGGGCATTTCTCAATGGTAAATGCTGGGAAGGGCACGATCTGAAATTTATATGGCTGACATCTAGCACCGGCAATGACCGCAGTGGTAGAGAAAACTCTCCATCTACCACCCCTAAGGGGCCATTACCGGTTGATACTCAGCCTGCAGATAAAGAAGCATGCATTGATTCCCAGGAAGCTGCTGCATCAGGAAATGGAGAACCGGAACATTCTGAACGAATAAGTGGCGTTGAGGACATGGAATCGGATGAACATGCCGAACCTAGTCCAATGTCAACATCAGGCGACAAAGAGTCATCCCAGGGCGATGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

943

Amino Acids

102.52

Weight (kDa)

6.03

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 485 - 548 1.5e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 1852
AccBSI CCGCTC 1 cut(s) 2502
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 1422
AciI CCGC 5 cut(s) 468, 2129, 2411, 2500, 2590
AclWI GGATC 8 cut(s) 37, 89, 460, 573, 586, 791, 883, 1874
AcsI RAATTY 7 cut(s) 301, 1142, 1264, 1517, 1671, 2328, 2555
AcuI CTGAAG 2 cut(s) 1254, 1617
AcyI GRCGYC 2 cut(s) 337, 1397
AdeI CACNNNGTG 1 cut(s) 575
AfaI GTAC 4 cut(s) 283, 1186, 1450, 2206
AfiI CCNNNNNNNGG 9 cut(s) 62, 431, 545, 1340, 1682, 1971, 2069, 2260, 2628
AgeI ACCGGT 1 cut(s) 2638
AhdI GACNNNNNGTC 2 cut(s) 2253, 2803
AjiI CACGTC 1 cut(s) 1337
AjuI GAANNNNNNNTTGG 2 cut(s) 664, 696
Alw21I GWGCWC 2 cut(s) 367, 571
Alw26I GTCTC 7 cut(s) 153, 176, 408, 711, 1420, 2027, 2053
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 8 cut(s) 37, 89, 460, 573, 586, 791, 883, 1874
AlwNI CAGNNNCTG 2 cut(s) 872, 1616
Ama87I CYCGRG 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 1422
AoxI GGCC 9 cut(s) 67, 212, 469, 868, 1084, 1366, 1887, 1962, 2630
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 8 cut(s) 1601, 1799, 2051, 2218, 2221, 2242, 2690, 2693
ApoI RAATTY 7 cut(s) 301, 1142, 1264, 1517, 1671, 2328, 2555
AsiGI ACCGGT 1 cut(s) 2638
AspA2I CCTAGG 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 7 cut(s) 1086, 1861, 2042, 2268, 2379, 2408, 2453
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 4 cut(s) 422, 995, 2021, 2264
AvrII CCTAGG 1 cut(s) 473
AxyI CCTNAGG 2 cut(s) 99, 2625
BaeGI GKGCMC 3 cut(s) 571, 761, 2547
BamHI GGATCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 367, 571
BbvI GCAGC 8 cut(s) 1588, 1786, 2038, 2205, 2229, 2233, 2677, 2680
BccI CCATC 7 cut(s) 892, 959, 1004, 1358, 1438, 1555, 2620
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 2 cut(s) 196, 1033
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 7 cut(s) 153, 176, 408, 711, 1420, 2027, 2053
BfaI CTAG 7 cut(s) 474, 1082, 1770, 1910, 2232, 2574, 2775
BfmI CTRYAG 5 cut(s) 1898, 2188, 2219, 2243, 2655
BfuAI ACCTGC 1 cut(s) 1852
BfuI GTATCC 1 cut(s) 622
BglI GCCNNNNNGGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 2422
BlnI CCTAGG 1 cut(s) 473
BlpI GCTNAGC 2 cut(s) 2473, 2503
Bme18I GGWCC 4 cut(s) 422, 995, 2021, 2264
BmeRI GACNNNNNGTC 2 cut(s) 2253, 2803
BmeT110I CYCGRG 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 1337
BmiI GGNNCC 9 cut(s) 68, 461, 517, 580, 622, 1890, 2023, 2265, 2631
BmrI ACTGGG 4 cut(s) 863, 1692, 2196, 2279
BmuI ACTGGG 4 cut(s) 863, 1692, 2196, 2279
BoxI GACNNNNGTC 4 cut(s) 420, 953, 1983, 2310
BplI GAGNNNNNCTC 4 cut(s) 796, 828, 1417, 1449
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 2 cut(s) 2473, 2503
BpuEI CTTGAG 2 cut(s) 258, 2024
BpuMI CCSGG 1 cut(s) 392
BsaBI GATNNNNATC 2 cut(s) 132, 378
BsaHI GRCGYC 2 cut(s) 337, 1397
BsaI GGTCTC 3 cut(s) 408, 1420, 2053
BsaWI WCCGGW 3 cut(s) 1422, 2638, 2713
BsaXI ACNNNNNCTCC 2 cut(s) 1678, 1708
Bsc4I CCNNNNNNNGG 9 cut(s) 62, 431, 545, 1340, 1682, 1971, 2069, 2260, 2628
Bse118I RCCGGY 2 cut(s) 2579, 2638
Bse21I CCTNAGG 2 cut(s) 99, 2625
Bse3DI GCAATG 3 cut(s) 908, 2142, 2590
Bse8I GATNNNNATC 2 cut(s) 132, 378
BseAI TCCGGA 1 cut(s) 1422
BseGI GGATG 7 cut(s) 896, 1369, 1419, 1467, 2137, 2764, 2807
BseJI GATNNNNATC 2 cut(s) 132, 378
BseLI CCNNNNNNNGG 9 cut(s) 62, 431, 545, 1340, 1682, 1971, 2069, 2260, 2628
BseMI GCAATG 3 cut(s) 908, 2142, 2590
BseMII CTCAG 8 cut(s) 90, 185, 498, 827, 1487, 2487, 2517, 2663
BseRI GAGGAG 4 cut(s) 116, 740, 762, 2101
BseSI GKGCMC 3 cut(s) 571, 761, 2547
BseXI GCAGC 8 cut(s) 1588, 1786, 2038, 2205, 2229, 2233, 2677, 2680
BseYI CCCAGC 1 cut(s) 2535
Bsh1236I CGCG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 9 cut(s) 69, 214, 471, 870, 1086, 1368, 1889, 1964, 2632
BshTI ACCGGT 1 cut(s) 2638
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 367, 571
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 5 cut(s) 391, 1423, 2580, 2639, 2714
BslFI GGGAC 5 cut(s) 458, 1044, 1177, 1699, 2277
BslI CCNNNNNNNGG 9 cut(s) 62, 431, 545, 1340, 1682, 1971, 2069, 2260, 2628
BsmAI GTCTC 7 cut(s) 153, 176, 408, 711, 1420, 2027, 2053
BsmFI GGGAC 5 cut(s) 458, 1044, 1177, 1699, 2277
BsmI GAATGC 2 cut(s) 592, 847
BsnI GGCC 9 cut(s) 69, 214, 471, 870, 1086, 1368, 1889, 1964, 2632
Bso31I GGTCTC 3 cut(s) 408, 1420, 2053
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 5 cut(s) 367, 518, 571, 761, 2547
Bsp13I TCCGGA 1 cut(s) 1422
Bsp1720I GCTNAGC 2 cut(s) 2473, 2503
Bsp19I CCATGG 4 cut(s) 287, 624, 1377, 1720
BspACI CCGC 5 cut(s) 468, 2129, 2411, 2500, 2590
BspANI GGCC 9 cut(s) 69, 214, 471, 870, 1086, 1368, 1889, 1964, 2632
BspCNI CTCAG 8 cut(s) 91, 184, 497, 826, 1486, 2486, 2516, 2662
BspEI TCCGGA 1 cut(s) 1422
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 9 cut(s) 68, 461, 517, 580, 622, 1890, 2023, 2265, 2631
BspMAI CTGCAG 4 cut(s) 1902, 2223, 2247, 2659
BspMI ACCTGC 1 cut(s) 1852
BspPI GGATC 8 cut(s) 37, 89, 460, 573, 586, 791, 883, 1874
BspQI GCTCTTC 1 cut(s) 1503
BspTNI GGTCTC 3 cut(s) 408, 1420, 2053
BsrBI CCGCTC 1 cut(s) 2502
BsrDI GCAATG 3 cut(s) 908, 2142, 2590
BsrFI RCCGGY 2 cut(s) 2579, 2638
BssAI RCCGGY 2 cut(s) 2579, 2638
BssNI GRCGYC 2 cut(s) 337, 1397
BssT1I CCWWGG 7 cut(s) 287, 418, 473, 624, 1377, 1720, 2025
Bst4CI ACNGT 3 cut(s) 1058, 2312, 2396
Bst6I CTCTTC 3 cut(s) 430, 1503, 1584
BstACI GRCGYC 2 cut(s) 337, 1397
BstAPI GCANNNNNTGC 6 cut(s) 1013, 1619, 1832, 1957, 2141, 2363
BstC8I GCNNGC 7 cut(s) 650, 1088, 1962, 2049, 2142, 2655, 2671
BstDSI CCRYGG 4 cut(s) 287, 624, 1377, 1720
BstEII GGTNACC 1 cut(s) 1631
BstF5I GGATG 7 cut(s) 896, 1369, 1419, 1467, 2137, 2764, 2807
BstFNI CGCG 1 cut(s) 468
BstMAI GTCTC 7 cut(s) 153, 176, 408, 711, 1420, 2027, 2053
BstMCI CGRYCG 1 cut(s) 136
BstNSI RCATGY 4 cut(s) 1195, 2144, 2673, 2768
BstPAI GACNNNNGTC 4 cut(s) 420, 953, 1983, 2310
BstPI GGTNACC 1 cut(s) 1631
BstSFI CTRYAG 5 cut(s) 1898, 2188, 2219, 2243, 2655
BstSLI GKGCMC 3 cut(s) 571, 761, 2547
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 8 cut(s) 1588, 1786, 2038, 2205, 2229, 2233, 2677, 2680
BstX2I RGATCY 3 cut(s) 578, 875, 2422
BstXI CCANNNNNNTGG 1 cut(s) 1763
BstYI RGATCY 3 cut(s) 578, 875, 2422
Bsu36I CCTNAGG 2 cut(s) 99, 2625
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 9 cut(s) 69, 214, 471, 870, 1086, 1368, 1889, 1964, 2632
BtgI CCRYGG 4 cut(s) 287, 624, 1377, 1720
BtrI CACGTC 1 cut(s) 1337
BtsCI GGATG 7 cut(s) 896, 1369, 1419, 1467, 2137, 2764, 2807
BtsI GCAGTG 4 cut(s) 353, 1442, 1745, 2599
BtsIMutI CAGTG 9 cut(s) 353, 571, 894, 957, 1442, 1745, 1746, 2267, 2599
BveI ACCTGC 1 cut(s) 1852
Cac8I GCNNGC 7 cut(s) 650, 1088, 1962, 2049, 2142, 2655, 2671
CaiI CAGNNNCTG 2 cut(s) 872, 1616
Cfr10I RCCGGY 2 cut(s) 2579, 2638
CseI GACGC 2 cut(s) 345, 1405
Csp6I GTAC 4 cut(s) 282, 1185, 1449, 2205
CspAI ACCGGT 1 cut(s) 2638
CspCI CAANNNNNGTGG 2 cut(s) 1025, 1060
CviQI GTAC 4 cut(s) 282, 1185, 1449, 2205
DraI TTTAAA 1 cut(s) 2326
DraIII CACNNNGTG 1 cut(s) 575
DriI GACNNNNNGTC 2 cut(s) 2253, 2803
Eam1104I CTCTTC 3 cut(s) 430, 1503, 1584
Eam1105I GACNNNNNGTC 2 cut(s) 2253, 2803
EarI CTCTTC 3 cut(s) 430, 1503, 1584
Eco130I CCWWGG 7 cut(s) 287, 418, 473, 624, 1377, 1720, 2025
Eco147I AGGCCT 1 cut(s) 1086
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 3 cut(s) 408, 1420, 2053
Eco47I GGWCC 4 cut(s) 422, 995, 2021, 2264
Eco57I CTGAAG 2 cut(s) 1254, 1617
Eco81I CCTNAGG 2 cut(s) 99, 2625
Eco88I CYCGRG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 1631
EcoO109I RGGNCCY 3 cut(s) 67, 869, 1888
EcoO65I GGTNACC 1 cut(s) 1631
EcoRI GAATTC 2 cut(s) 1142, 1671
EcoT14I CCWWGG 7 cut(s) 287, 418, 473, 624, 1377, 1720, 2025
EcoT22I ATGCAT 5 cut(s) 592, 1828, 2142, 2675, 2824
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 7 cut(s) 287, 418, 473, 624, 1377, 1720, 2025
FalI AAGNNNNNCTT 2 cut(s) 2366, 2398
FaqI GGGAC 5 cut(s) 458, 1044, 1177, 1699, 2277
FbaI TGATCA 2 cut(s) 196, 1033
FblI GTMKAC 1 cut(s) 154
FokI GGATG 7 cut(s) 883, 1376, 1406, 1454, 2144, 2771, 2794
FriOI GRGCYC 1 cut(s) 518
FspBI CTAG 7 cut(s) 474, 1082, 1770, 1910, 2232, 2574, 2775
GsaI CCCAGC 1 cut(s) 2539
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 9 cut(s) 69, 214, 471, 870, 1086, 1368, 1889, 1964, 2632
HapII CCGG 5 cut(s) 391, 1423, 2580, 2639, 2714
HgaI GACGC 2 cut(s) 345, 1405
Hin1I GRCGYC 2 cut(s) 337, 1397
HincII GTYRAC 3 cut(s) 348, 1318, 2787
HindII GTYRAC 3 cut(s) 348, 1318, 2787
HindIII AAGCTT 2 cut(s) 925, 2000
HpaII CCGG 5 cut(s) 391, 1423, 2580, 2639, 2714
HphI GGTGA 7 cut(s) 1086, 1861, 2042, 2268, 2379, 2408, 2453
Hpy99I CGWCG 1 cut(s) 1989
HpyCH4III ACNGT 3 cut(s) 1058, 2312, 2396
HpyCH4IV ACGT 1 cut(s) 1336
HpySE526I ACGT 1 cut(s) 1336
Hsp92I GRCGYC 2 cut(s) 337, 1397
Kpn2I TCCGGA 1 cut(s) 1422
Ksp22I TGATCA 2 cut(s) 196, 1033
LguI GCTCTTC 1 cut(s) 1503
LmnI GCTCC 5 cut(s) 459, 521, 727, 766, 1807
Lsp1109I GCAGC 8 cut(s) 1588, 1786, 2038, 2205, 2229, 2233, 2677, 2680
MaeI CTAG 7 cut(s) 474, 1082, 1770, 1910, 2232, 2574, 2775
MaeII ACGT 1 cut(s) 1336
MaeIII GTNAC 5 cut(s) 955, 1415, 1631, 1726, 2098
MbiI CCGCTC 1 cut(s) 2502
MboII GAAGA 9 cut(s) 447, 672, 806, 1260, 1490, 1601, 1781, 2324, 2432
MflI RGATCY 3 cut(s) 578, 875, 2422
MhlI GDGCHC 5 cut(s) 367, 518, 571, 761, 2547
MlyI GAGTC 5 cut(s) 263, 538, 814, 2095, 2813
MmeI TCCRAC 3 cut(s) 688, 1974, 2433
Mph1103I ATGCAT 5 cut(s) 592, 1828, 2142, 2675, 2824
MroI TCCGGA 1 cut(s) 1422
MseI TTAA 5 cut(s) 41, 113, 686, 1607, 2325
MslI CAYNNNNRTG 1 cut(s) 1196
MspA1I CMGCKG 1 cut(s) 2348
MspI CCGG 5 cut(s) 391, 1423, 2580, 2639, 2714
Mva1269I GAATGC 2 cut(s) 592, 847
MvnI CGCG 1 cut(s) 468
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 4 cut(s) 287, 624, 1377, 1720
NlaIV GGNNCC 9 cut(s) 68, 461, 517, 580, 622, 1890, 2023, 2265, 2631
NmuCI GTSAC 2 cut(s) 955, 2098
NsiI ATGCAT 5 cut(s) 592, 1828, 2142, 2675, 2824
NspI RCATGY 4 cut(s) 1195, 2144, 2673, 2768
PaeI GCATGC 2 cut(s) 2144, 2673
PaeR7I CTCGAG 1 cut(s) 360
PasI CCCWGGG 2 cut(s) 341, 2812
PceI AGGCCT 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 1503
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PctI GAATGC 2 cut(s) 592, 847
PfoI TCCNGGA 3 cut(s) 409, 581, 604
PinAI ACCGGT 1 cut(s) 2638
Ple19I CGATCG 1 cut(s) 136
PleI GAGTC 5 cut(s) 263, 537, 813, 2095, 2812
PpsI GAGTC 5 cut(s) 263, 537, 813, 2095, 2812
PshAI GACNNNNGTC 4 cut(s) 420, 953, 1983, 2310
PsiI TTATAA 1 cut(s) 206
PspEI GGTNACC 1 cut(s) 1631
PspFI CCCAGC 1 cut(s) 2535
PspN4I GGNNCC 9 cut(s) 68, 461, 517, 580, 622, 1890, 2023, 2265, 2631
PspXI VCTCGAGB 1 cut(s) 360
PstI CTGCAG 4 cut(s) 1902, 2223, 2247, 2659
PstNI CAGNNNCTG 2 cut(s) 872, 1616
PsuI RGATCY 3 cut(s) 578, 875, 2422
PvuI CGATCG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 2348
RsaI GTAC 4 cut(s) 283, 1186, 1450, 2206
RsaNI GTAC 4 cut(s) 282, 1185, 1449, 2205
RseI CAYNNNNRTG 1 cut(s) 1196
SapI GCTCTTC 1 cut(s) 1503
SaqAI TTAA 5 cut(s) 41, 113, 686, 1607, 2325
SchI GAGTC 5 cut(s) 263, 538, 814, 2095, 2813
SduI GDGCHC 5 cut(s) 367, 518, 571, 761, 2547
SfcI CTRYAG 5 cut(s) 1898, 2188, 2219, 2243, 2655
Sfr274I CTCGAG 1 cut(s) 360
SinI GGWCC 4 cut(s) 422, 995, 2021, 2264
SlaI CTCGAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 3 cut(s) 273, 360, 2003
SmoI CTYRAG 3 cut(s) 273, 360, 2003
SphI GCATGC 2 cut(s) 2144, 2673
SseBI AGGCCT 1 cut(s) 1086
SsiI CCGC 5 cut(s) 468, 2129, 2411, 2500, 2590
SspMI CTAG 7 cut(s) 474, 1082, 1770, 1910, 2232, 2574, 2775
StuI AGGCCT 1 cut(s) 1086
StyI CCWWGG 7 cut(s) 287, 418, 473, 624, 1377, 1720, 2025
TaaI ACNGT 3 cut(s) 1058, 2312, 2396
TaiI ACGT 1 cut(s) 1339
TaqI TCGA 3 cut(s) 136, 361, 833
TatI WGTACW 3 cut(s) 281, 1184, 2204
TauI GCSGC 2 cut(s) 471, 2502
Tru1I TTAA 5 cut(s) 41, 113, 686, 1607, 2325
Tru9I TTAA 5 cut(s) 41, 113, 686, 1607, 2325
TscAI CASTG 9 cut(s) 360, 571, 894, 964, 1449, 1746, 1752, 2274, 2599
TseFI GTSAC 2 cut(s) 955, 2098
TseI GCWGC 8 cut(s) 1601, 1799, 2051, 2218, 2221, 2242, 2690, 2693
Tsp45I GTSAC 2 cut(s) 955, 2098
TspDTI ATGAA 8 cut(s) 39, 672, 1122, 1155, 1374, 1749, 2387, 2775
TspGWI ACGGA 2 cut(s) 1186, 2243
TspRI CASTG 9 cut(s) 360, 571, 894, 964, 1449, 1746, 1752, 2274, 2599
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 4 cut(s) 422, 995, 2021, 2264
XapI RAATTY 7 cut(s) 301, 1142, 1264, 1517, 1671, 2328, 2555
XceI RCATGY 4 cut(s) 1195, 2144, 2673, 2768
XcmI CCANNNNNNNNNTGG 2 cut(s) 407, 2209
XhoI CTCGAG 1 cut(s) 360
XmaJI CCTAGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 7 cut(s) 474, 1082, 1770, 1910, 2232, 2574, 2775
Zsp2I ATGCAT 5 cut(s) 592, 1828, 2142, 2675, 2824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.