zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27700 AT3G27700 |
| fragaria_vesca | FvH4_6g51350 |
| malus_domestica | MD09G1028400.v1.1 MD17G1029900.v1.1 |
| prunus_persica | Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1 |
| pyrus_communis | pycom111g02240 pycom17g02730 |
| rosa_chinensis | RchiOBHm_Chr2g0173051 |
| rosa_laevigata | RLG00000022152 |
| rosa_multiflora | Rmu_sc0011236.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079290 |
| rosa_rugosa | Rorug02G0564800 |
| rosa_samantha | Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600 |
| rosa_wichuraiana | Rw2G052940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 206 |
| Acc36I | ACCTGC | 1 cut(s) | 1840 |
| AccB1I | GGYRCC | 2 cut(s) | 1612, 1735 |
| AccBSI | CCGCTC | 1 cut(s) | 2490 |
| AccI | GTMKAC | 1 cut(s) | 154 |
| AccII | CGCG | 1 cut(s) | 1336 |
| AciI | CCGC | 7 cut(s) | 468, 1007, 1334, 2117, 2399, 2488, 2578 |
| AclWI | GGATC | 6 cut(s) | 37, 89, 573, 586, 883, 1247 |
| AcsI | RAATTY | 6 cut(s) | 301, 1142, 1264, 1517, 2316, 2543 |
| AcuI | CTGAAG | 2 cut(s) | 1254, 1617 |
| AcyI | GRCGYC | 2 cut(s) | 337, 1397 |
| AdeI | CACNNNGTG | 1 cut(s) | 575 |
| AfaI | GTAC | 5 cut(s) | 283, 1186, 1450, 2194, 2566 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 62, 431, 545, 1340, 1682, 1959, 2057, 2248 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2241, 2788 |
| AjnI | CCWGG | 8 cut(s) | 409, 424, 581, 604, 871, 997, 1097, 2670 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 664, 696 |
| Alw21I | GWGCWC | 1 cut(s) | 571 |
| Alw26I | GTCTC | 5 cut(s) | 153, 176, 408, 711, 2041 |
| Alw44I | GTGCAC | 1 cut(s) | 567 |
| AlwI | GGATC | 6 cut(s) | 37, 89, 573, 586, 883, 1247 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 872 |
| Ama87I | CYCGRG | 3 cut(s) | 340, 360, 539 |
| AoxI | GGCC | 9 cut(s) | 67, 212, 868, 1084, 1366, 1427, 1875, 1950, 2618 |
| ApaLI | GTGCAC | 1 cut(s) | 567 |
| ApeKI | GCWGC | 8 cut(s) | 1601, 1787, 2039, 2206, 2209, 2230, 2678, 2681 |
| ApoI | RAATTY | 6 cut(s) | 301, 1142, 1264, 1517, 2316, 2543 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspLEI | GCGC | 1 cut(s) | 367 |
| AsuC2I | CCSGG | 6 cut(s) | 63, 341, 342, 392, 540, 541 |
| AsuHPI | GGTGA | 5 cut(s) | 1086, 2030, 2367, 2396, 2441 |
| AvaI | CYCGRG | 3 cut(s) | 340, 360, 539 |
| AvaII | GGWCC | 7 cut(s) | 422, 470, 995, 1868, 2009, 2252, 2696 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| AxyI | CCTNAGG | 2 cut(s) | 99, 2613 |
| BaeGI | GKGCMC | 3 cut(s) | 571, 761, 1078 |
| BamHI | GGATCC | 1 cut(s) | 578 |
| BanI | GGYRCC | 2 cut(s) | 1612, 1735 |
| BanII | GRGCYC | 1 cut(s) | 518 |
| BauI | CACGAG | 1 cut(s) | 2112 |
| Bbv12I | GWGCWC | 1 cut(s) | 571 |
| BbvI | GCAGC | 8 cut(s) | 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668 |
| BccI | CCATC | 7 cut(s) | 892, 959, 1004, 1358, 1438, 1555, 2608 |
| BceAI | ACGGC | 1 cut(s) | 1626 |
| BciT130I | CCWGG | 8 cut(s) | 411, 426, 583, 606, 873, 999, 1099, 2672 |
| BciVI | GTATCC | 1 cut(s) | 622 |
| BclI | TGATCA | 2 cut(s) | 196, 1033 |
| BcnI | CCSGG | 6 cut(s) | 63, 341, 342, 392, 540, 541 |
| BcoDI | GTCTC | 5 cut(s) | 153, 176, 408, 711, 2041 |
| BfaI | CTAG | 8 cut(s) | 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760 |
| BfmI | CTRYAG | 5 cut(s) | 1886, 2176, 2207, 2231, 2643 |
| BfoI | RGCGCY | 1 cut(s) | 368 |
| BfuAI | ACCTGC | 1 cut(s) | 1840 |
| BfuI | GTATCC | 1 cut(s) | 622 |
| BglII | AGATCT | 1 cut(s) | 2410 |
| BisI | GCNGC | 9 cut(s) | 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| BlpI | GCTNAGC | 3 cut(s) | 2461, 2491, 2637 |
| BlsI | GCNGC | 9 cut(s) | 1603, 1789, 2041, 2208, 2211, 2232, 2489, 2680, 2683 |
| Bme18I | GGWCC | 7 cut(s) | 422, 470, 995, 1868, 2009, 2252, 2696 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2241, 2788 |
| BmeT110I | CYCGRG | 3 cut(s) | 340, 360, 539 |
| BmrI | ACTGGG | 4 cut(s) | 863, 1692, 2184, 2267 |
| BmuI | ACTGGG | 4 cut(s) | 863, 1692, 2184, 2267 |
| BoxI | GACNNNNGTC | 4 cut(s) | 420, 953, 1971, 2298 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 796, 828, 1417, 1449 |
| BpmI | CTGGAG | 1 cut(s) | 432 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2461, 2491, 2637 |
| BpuEI | CTTGAG | 3 cut(s) | 258, 1054, 2012 |
| BpuMI | CCSGG | 6 cut(s) | 63, 341, 342, 392, 540, 541 |
| Bsa29I | ATCGAT | 1 cut(s) | 451 |
| BsaBI | GATNNNNATC | 2 cut(s) | 132, 378 |
| BsaHI | GRCGYC | 2 cut(s) | 337, 1397 |
| BsaI | GGTCTC | 2 cut(s) | 408, 2041 |
| BsaWI | WCCGGW | 1 cut(s) | 2698 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1678, 1708 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 62, 431, 545, 1340, 1682, 1959, 2057, 2248 |
| Bse118I | RCCGGY | 1 cut(s) | 2567 |
| Bse21I | CCTNAGG | 2 cut(s) | 99, 2613 |
| Bse3DI | GCAATG | 3 cut(s) | 908, 2130, 2578 |
| Bse8I | GATNNNNATC | 2 cut(s) | 132, 378 |
| BseBI | CCWGG | 8 cut(s) | 411, 426, 583, 606, 873, 999, 1099, 2672 |
| BseCI | ATCGAT | 1 cut(s) | 451 |
| BseGI | GGATG | 6 cut(s) | 896, 1015, 1369, 1467, 2125, 2749 |
| BseJI | GATNNNNATC | 2 cut(s) | 132, 378 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 62, 431, 545, 1340, 1682, 1959, 2057, 2248 |
| BseMI | GCAATG | 3 cut(s) | 908, 2130, 2578 |
| BseMII | CTCAG | 9 cut(s) | 90, 185, 498, 827, 1487, 2475, 2505, 2651, 2810 |
| BseRI | GAGGAG | 4 cut(s) | 116, 740, 762, 2089 |
| BseSI | GKGCMC | 3 cut(s) | 571, 761, 1078 |
| BseXI | GCAGC | 8 cut(s) | 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668 |
| BseYI | CCCAGC | 1 cut(s) | 2523 |
| Bsh1236I | CGCG | 1 cut(s) | 1336 |
| Bsh1285I | CGRYCG | 1 cut(s) | 136 |
| BshFI | GGCC | 9 cut(s) | 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620 |
| BshNI | GGYRCC | 2 cut(s) | 1612, 1735 |
| BshVI | ATCGAT | 1 cut(s) | 451 |
| BsiEI | CGRYCG | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 571 |
| BsiHKCI | CYCGRG | 3 cut(s) | 340, 360, 539 |
| BsiSI | CCGG | 6 cut(s) | 62, 341, 391, 540, 2568, 2699 |
| BslFI | GGGAC | 5 cut(s) | 458, 1177, 1699, 1854, 2265 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 62, 431, 545, 1340, 1682, 1959, 2057, 2248 |
| BsmAI | GTCTC | 5 cut(s) | 153, 176, 408, 711, 2041 |
| BsmFI | GGGAC | 5 cut(s) | 458, 1177, 1699, 1854, 2265 |
| BsmI | GAATGC | 1 cut(s) | 592 |
| BsnI | GGCC | 9 cut(s) | 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620 |
| Bso31I | GGTCTC | 2 cut(s) | 408, 2041 |
| BsoBI | CYCGRG | 3 cut(s) | 340, 360, 539 |
| Bsp1286I | GDGCHC | 4 cut(s) | 518, 571, 761, 1078 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2461, 2491, 2637 |
| Bsp19I | CCATGG | 2 cut(s) | 624, 1377 |
| BspACI | CCGC | 7 cut(s) | 468, 1007, 1334, 2117, 2399, 2488, 2578 |
| BspANI | GGCC | 9 cut(s) | 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620 |
| BspCNI | CTCAG | 9 cut(s) | 91, 184, 497, 826, 1486, 2474, 2504, 2650, 2809 |
| BspDI | ATCGAT | 1 cut(s) | 451 |
| BspFNI | CGCG | 1 cut(s) | 1336 |
| BspMAI | CTGCAG | 4 cut(s) | 1890, 2211, 2235, 2647 |
| BspMI | ACCTGC | 1 cut(s) | 1840 |
| BspPI | GGATC | 6 cut(s) | 37, 89, 573, 586, 883, 1247 |
| BspQI | GCTCTTC | 1 cut(s) | 1503 |
| BspT107I | GGYRCC | 2 cut(s) | 1612, 1735 |
| BspTNI | GGTCTC | 2 cut(s) | 408, 2041 |
| BsrBI | CCGCTC | 1 cut(s) | 2490 |
| BsrDI | GCAATG | 3 cut(s) | 908, 2130, 2578 |
| BsrFI | RCCGGY | 1 cut(s) | 2567 |
| BssAI | RCCGGY | 1 cut(s) | 2567 |
| BssNI | GRCGYC | 2 cut(s) | 337, 1397 |
| BssSI | CACGAG | 1 cut(s) | 2112 |
| BssT1I | CCWWGG | 7 cut(s) | 418, 473, 624, 1377, 1872, 2013, 2765 |
| Bst2BI | CACGAG | 1 cut(s) | 2112 |
| Bst2UI | CCWGG | 8 cut(s) | 411, 426, 583, 606, 873, 999, 1099, 2672 |
| Bst4CI | ACNGT | 3 cut(s) | 288, 1058, 2300 |
| Bst6I | CTCTTC | 3 cut(s) | 430, 1503, 1584 |
| BstACI | GRCGYC | 2 cut(s) | 337, 1397 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1619, 1820, 1945, 2129, 2351 |
| BstC8I | GCNNGC | 7 cut(s) | 650, 1088, 1950, 2037, 2130, 2643, 2659 |
| BstDSI | CCRYGG | 3 cut(s) | 287, 624, 1377 |
| BstEII | GGTNACC | 1 cut(s) | 1631 |
| BstF5I | GGATG | 6 cut(s) | 896, 1015, 1369, 1467, 2125, 2749 |
| BstFNI | CGCG | 1 cut(s) | 1336 |
| BstH2I | RGCGCY | 1 cut(s) | 368 |
| BstHHI | GCGC | 1 cut(s) | 367 |
| BstMAI | GTCTC | 5 cut(s) | 153, 176, 408, 711, 2041 |
| BstMCI | CGRYCG | 1 cut(s) | 136 |
| BstNI | CCWGG | 8 cut(s) | 411, 426, 583, 606, 873, 999, 1099, 2672 |
| BstNSI | RCATGY | 4 cut(s) | 1195, 2132, 2661, 2753 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 420, 953, 1971, 2298 |
| BstPI | GGTNACC | 1 cut(s) | 1631 |
| BstSFI | CTRYAG | 5 cut(s) | 1886, 2176, 2207, 2231, 2643 |
| BstSLI | GKGCMC | 3 cut(s) | 571, 761, 1078 |
| BstUI | CGCG | 1 cut(s) | 1336 |
| BstV1I | GCAGC | 8 cut(s) | 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668 |
| BstX2I | RGATCY | 3 cut(s) | 578, 875, 2410 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1727, 1751 |
| BstYI | RGATCY | 3 cut(s) | 578, 875, 2410 |
| Bsu15I | ATCGAT | 1 cut(s) | 451 |
| Bsu36I | CCTNAGG | 2 cut(s) | 99, 2613 |
| BsuI | GTATCC | 1 cut(s) | 622 |
| BsuRI | GGCC | 9 cut(s) | 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620 |
| BsuTUI | ATCGAT | 1 cut(s) | 451 |
| BtgI | CCRYGG | 3 cut(s) | 287, 624, 1377 |
| BtsCI | GGATG | 6 cut(s) | 896, 1015, 1369, 1467, 2125, 2749 |
| BtsI | GCAGTG | 3 cut(s) | 353, 1442, 2587 |
| BtsIMutI | CAGTG | 9 cut(s) | 306, 353, 470, 571, 894, 957, 1442, 2255, 2587 |
| BveI | ACCTGC | 1 cut(s) | 1840 |
| Cac8I | GCNNGC | 7 cut(s) | 650, 1088, 1950, 2037, 2130, 2643, 2659 |
| CaiI | CAGNNNCTG | 1 cut(s) | 872 |
| CfoI | GCGC | 1 cut(s) | 367 |
| Cfr10I | RCCGGY | 1 cut(s) | 2567 |
| Cfr9I | CCCGGG | 2 cut(s) | 340, 539 |
| ClaI | ATCGAT | 1 cut(s) | 451 |
| CseI | GACGC | 3 cut(s) | 345, 1325, 1405 |
| Csp6I | GTAC | 5 cut(s) | 282, 1185, 1449, 2193, 2565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1025, 1060 |
| CviQI | GTAC | 5 cut(s) | 282, 1185, 1449, 2193, 2565 |
| DraI | TTTAAA | 1 cut(s) | 2314 |
| DraIII | CACNNNGTG | 1 cut(s) | 575 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2241, 2788 |
| Eam1104I | CTCTTC | 3 cut(s) | 430, 1503, 1584 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2241, 2788 |
| EarI | CTCTTC | 3 cut(s) | 430, 1503, 1584 |
| Eco130I | CCWWGG | 7 cut(s) | 418, 473, 624, 1377, 1872, 2013, 2765 |
| Eco147I | AGGCCT | 1 cut(s) | 1086 |
| Eco24I | GRGCYC | 1 cut(s) | 518 |
| Eco31I | GGTCTC | 2 cut(s) | 408, 2041 |
| Eco47I | GGWCC | 7 cut(s) | 422, 470, 995, 1868, 2009, 2252, 2696 |
| Eco57I | CTGAAG | 2 cut(s) | 1254, 1617 |
| Eco81I | CCTNAGG | 2 cut(s) | 99, 2613 |
| Eco88I | CYCGRG | 3 cut(s) | 340, 360, 539 |
| Eco91I | GGTNACC | 1 cut(s) | 1631 |
| EcoO109I | RGGNCCY | 3 cut(s) | 67, 869, 1876 |
| EcoO65I | GGTNACC | 1 cut(s) | 1631 |
| EcoRI | GAATTC | 1 cut(s) | 1142 |
| EcoRII | CCWGG | 8 cut(s) | 409, 424, 581, 604, 871, 997, 1097, 2670 |
| EcoT14I | CCWWGG | 7 cut(s) | 418, 473, 624, 1377, 1872, 2013, 2765 |
| EcoT22I | ATGCAT | 5 cut(s) | 592, 1816, 2130, 2663, 2809 |
| EcoT38I | GRGCYC | 1 cut(s) | 518 |
| ErhI | CCWWGG | 7 cut(s) | 418, 473, 624, 1377, 1872, 2013, 2765 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2354, 2386 |
| FaqI | GGGAC | 5 cut(s) | 458, 1177, 1699, 1854, 2265 |
| FbaI | TGATCA | 2 cut(s) | 196, 1033 |
| FblI | GTMKAC | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 9 cut(s) | 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682 |
| FokI | GGATG | 6 cut(s) | 883, 1022, 1376, 1454, 2132, 2756 |
| FriOI | GRGCYC | 1 cut(s) | 518 |
| Fsp4HI | GCNGC | 9 cut(s) | 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682 |
| FspBI | CTAG | 8 cut(s) | 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760 |
| GlaI | GCGC | 1 cut(s) | 366 |
| GluI | GCNGC | 9 cut(s) | 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682 |
| GsaI | CCCAGC | 1 cut(s) | 2527 |
| GsuI | CTGGAG | 1 cut(s) | 432 |
| HaeII | RGCGCY | 1 cut(s) | 368 |
| HaeIII | GGCC | 9 cut(s) | 69, 214, 870, 1086, 1368, 1429, 1877, 1952, 2620 |
| HapII | CCGG | 6 cut(s) | 62, 341, 391, 540, 2568, 2699 |
| HgaI | GACGC | 3 cut(s) | 345, 1325, 1405 |
| HhaI | GCGC | 1 cut(s) | 367 |
| Hin1I | GRCGYC | 2 cut(s) | 337, 1397 |
| Hin6I | GCGC | 1 cut(s) | 365 |
| HinP1I | GCGC | 1 cut(s) | 365 |
| HincII | GTYRAC | 3 cut(s) | 348, 1318, 2772 |
| HindII | GTYRAC | 3 cut(s) | 348, 1318, 2772 |
| HindIII | AAGCTT | 2 cut(s) | 925, 1988 |
| HpaII | CCGG | 6 cut(s) | 62, 341, 391, 540, 2568, 2699 |
| HphI | GGTGA | 5 cut(s) | 1086, 2030, 2367, 2396, 2441 |
| Hpy188III | TCNNGA | 9 cut(s) | 98, 194, 802, 1061, 1664, 1676, 1710, 2414, 2688 |
| Hpy99I | CGWCG | 1 cut(s) | 1977 |
| HpyCH4III | ACNGT | 3 cut(s) | 288, 1058, 2300 |
| HpyCH4IV | ACGT | 1 cut(s) | 1300 |
| HpySE526I | ACGT | 1 cut(s) | 1300 |
| Hsp92I | GRCGYC | 2 cut(s) | 337, 1397 |
| HspAI | GCGC | 1 cut(s) | 365 |
| Ksp22I | TGATCA | 2 cut(s) | 196, 1033 |
| LguI | GCTCTTC | 1 cut(s) | 1503 |
| LmnI | GCTCC | 6 cut(s) | 459, 521, 727, 766, 1795, 2102 |
| Lsp1109I | GCAGC | 8 cut(s) | 1588, 1774, 2026, 2193, 2217, 2221, 2665, 2668 |
| MaeI | CTAG | 8 cut(s) | 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760 |
| MaeII | ACGT | 1 cut(s) | 1300 |
| MaeIII | GTNAC | 4 cut(s) | 955, 1415, 1631, 2086 |
| MbiI | CCGCTC | 1 cut(s) | 2490 |
| MboII | GAAGA | 9 cut(s) | 447, 672, 806, 1260, 1490, 1601, 1769, 2312, 2420 |
| MflI | RGATCY | 3 cut(s) | 578, 875, 2410 |
| MhlI | GDGCHC | 4 cut(s) | 518, 571, 761, 1078 |
| MlyI | GAGTC | 5 cut(s) | 263, 538, 814, 2083, 2798 |
| MmeI | TCCRAC | 3 cut(s) | 688, 1962, 2421 |
| Mph1103I | ATGCAT | 5 cut(s) | 592, 1816, 2130, 2663, 2809 |
| MseI | TTAA | 5 cut(s) | 41, 113, 686, 1607, 2313 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1196 |
| MspA1I | CMGCKG | 1 cut(s) | 2336 |
| MspI | CCGG | 6 cut(s) | 62, 341, 391, 540, 2568, 2699 |
| Mva1269I | GAATGC | 1 cut(s) | 592 |
| MvaI | CCWGG | 8 cut(s) | 411, 426, 583, 606, 873, 999, 1099, 2672 |
| MvnI | CGCG | 1 cut(s) | 1336 |
| NciI | CCSGG | 6 cut(s) | 63, 341, 342, 392, 540, 541 |
| NcoI | CCATGG | 2 cut(s) | 624, 1377 |
| NmeAIII | GCCGAG | 1 cut(s) | 2779 |
| NmuCI | GTSAC | 2 cut(s) | 955, 2086 |
| NsiI | ATGCAT | 5 cut(s) | 592, 1816, 2130, 2663, 2809 |
| NspI | RCATGY | 4 cut(s) | 1195, 2132, 2661, 2753 |
| PaeI | GCATGC | 2 cut(s) | 2132, 2661 |
| PaeR7I | CTCGAG | 1 cut(s) | 360 |
| PceI | AGGCCT | 1 cut(s) | 1086 |
| PciSI | GCTCTTC | 1 cut(s) | 1503 |
| PctI | GAATGC | 1 cut(s) | 592 |
| PfoI | TCCNGGA | 3 cut(s) | 409, 581, 604 |
| PkrI | GCNGC | 9 cut(s) | 1603, 1789, 2041, 2208, 2211, 2232, 2489, 2680, 2683 |
| Ple19I | CGATCG | 1 cut(s) | 136 |
| PleI | GAGTC | 5 cut(s) | 263, 537, 813, 2083, 2797 |
| PpsI | GAGTC | 5 cut(s) | 263, 537, 813, 2083, 2797 |
| PshAI | GACNNNNGTC | 4 cut(s) | 420, 953, 1971, 2298 |
| PsiI | TTATAA | 1 cut(s) | 206 |
| Psp6I | CCWGG | 8 cut(s) | 409, 424, 581, 604, 871, 997, 1097, 2670 |
| PspEI | GGTNACC | 1 cut(s) | 1631 |
| PspFI | CCCAGC | 1 cut(s) | 2523 |
| PspGI | CCWGG | 8 cut(s) | 409, 424, 581, 604, 871, 997, 1097, 2670 |
| PspXI | VCTCGAGB | 1 cut(s) | 360 |
| PstI | CTGCAG | 4 cut(s) | 1890, 2211, 2235, 2647 |
| PstNI | CAGNNNCTG | 1 cut(s) | 872 |
| PsuI | RGATCY | 3 cut(s) | 578, 875, 2410 |
| PvuI | CGATCG | 1 cut(s) | 136 |
| PvuII | CAGCTG | 1 cut(s) | 2336 |
| RsaI | GTAC | 5 cut(s) | 283, 1186, 1450, 2194, 2566 |
| RsaNI | GTAC | 5 cut(s) | 282, 1185, 1449, 2193, 2565 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SapI | GCTCTTC | 1 cut(s) | 1503 |
| SaqAI | TTAA | 5 cut(s) | 41, 113, 686, 1607, 2313 |
| SatI | GCNGC | 9 cut(s) | 1602, 1788, 2040, 2207, 2210, 2231, 2488, 2679, 2682 |
| SchI | GAGTC | 5 cut(s) | 263, 538, 814, 2083, 2798 |
| SduI | GDGCHC | 4 cut(s) | 518, 571, 761, 1078 |
| SfcI | CTRYAG | 5 cut(s) | 1886, 2176, 2207, 2231, 2643 |
| Sfr274I | CTCGAG | 1 cut(s) | 360 |
| SinI | GGWCC | 7 cut(s) | 422, 470, 995, 1868, 2009, 2252, 2696 |
| SlaI | CTCGAG | 1 cut(s) | 360 |
| SmaI | CCCGGG | 2 cut(s) | 342, 541 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SmlI | CTYRAG | 4 cut(s) | 273, 360, 1069, 1991 |
| SmoI | CTYRAG | 4 cut(s) | 273, 360, 1069, 1991 |
| SphI | GCATGC | 2 cut(s) | 2132, 2661 |
| SseBI | AGGCCT | 1 cut(s) | 1086 |
| SsiI | CCGC | 7 cut(s) | 468, 1007, 1334, 2117, 2399, 2488, 2578 |
| SspMI | CTAG | 8 cut(s) | 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760 |
| StuI | AGGCCT | 1 cut(s) | 1086 |
| StyI | CCWWGG | 7 cut(s) | 418, 473, 624, 1377, 1872, 2013, 2765 |
| TaaI | ACNGT | 3 cut(s) | 288, 1058, 2300 |
| TaiI | ACGT | 1 cut(s) | 1303 |
| TaqI | TCGA | 4 cut(s) | 136, 361, 451, 1124 |
| TatI | WGTACW | 3 cut(s) | 281, 1184, 2192 |
| TauI | GCSGC | 1 cut(s) | 2490 |
| Tru1I | TTAA | 5 cut(s) | 41, 113, 686, 1607, 2313 |
| Tru9I | TTAA | 5 cut(s) | 41, 113, 686, 1607, 2313 |
| TscAI | CASTG | 9 cut(s) | 313, 360, 470, 571, 894, 964, 1449, 2262, 2587 |
| TseFI | GTSAC | 2 cut(s) | 955, 2086 |
| TseI | GCWGC | 8 cut(s) | 1601, 1787, 2039, 2206, 2209, 2230, 2678, 2681 |
| Tsp45I | GTSAC | 2 cut(s) | 955, 2086 |
| TspDTI | ATGAA | 9 cut(s) | 39, 672, 975, 1122, 1155, 1374, 1737, 2375, 2760 |
| TspGWI | ACGGA | 2 cut(s) | 1186, 2231 |
| TspMI | CCCGGG | 2 cut(s) | 340, 539 |
| TspRI | CASTG | 9 cut(s) | 313, 360, 470, 571, 894, 964, 1449, 2262, 2587 |
| VneI | GTGCAC | 1 cut(s) | 567 |
| VpaK11BI | GGWCC | 7 cut(s) | 422, 470, 995, 1868, 2009, 2252, 2696 |
| XapI | RAATTY | 6 cut(s) | 301, 1142, 1264, 1517, 2316, 2543 |
| XceI | RCATGY | 4 cut(s) | 1195, 2132, 2661, 2753 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 407, 2197 |
| XhoI | CTCGAG | 1 cut(s) | 360 |
| XmaI | CCCGGG | 2 cut(s) | 340, 539 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XmiI | GTMKAC | 1 cut(s) | 154 |
| XspI | CTAG | 8 cut(s) | 474, 1082, 1758, 1898, 2220, 2562, 2627, 2760 |
| Zsp2I | ATGCAT | 5 cut(s) | 592, 1816, 2130, 2663, 2809 |