zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27700 AT3G27700 |
| fragaria_vesca | FvH4_6g51350 |
| malus_domestica | MD09G1028400.v1.1 MD17G1029900.v1.1 |
| prunus_persica | Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1 |
| pyrus_communis | pycom111g02240 pycom17g02730 |
| rosa_chinensis | RchiOBHm_Chr2g0173051 |
| rosa_laevigata | RLG00000022152 |
| rosa_multiflora | Rmu_sc0011236.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079290 |
| rosa_rugosa | Rorug02G0564800 |
| rosa_samantha | Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600 |
| rosa_wichuraiana | Rw2G052940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 593, 1615 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 959 |
| AccI | GTMKAC | 1 cut(s) | 121 |
| AccII | CGCG | 1 cut(s) | 441 |
| AciI | CCGC | 7 cut(s) | 273, 1639, 1821, 2319, 2384, 2480, 2566 |
| AclI | AACGTT | 1 cut(s) | 2151 |
| AclWI | GGATC | 9 cut(s) | 56, 433, 483, 496, 850, 1094, 1250, 1403, 2245 |
| AcsI | RAATTY | 5 cut(s) | 296, 1888, 2301, 2528, 2581 |
| AcuI | CTGAAG | 4 cut(s) | 837, 852, 1257, 1620 |
| AcvI | CACGTG | 1 cut(s) | 2731 |
| AcyI | GRCGYC | 2 cut(s) | 310, 594 |
| AfaI | GTAC | 4 cut(s) | 250, 1189, 1453, 2179 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 29, 398, 959, 1343, 1685, 1735, 2042, 2479, 2607 |
| AflIII | ACRYGT | 1 cut(s) | 1415 |
| AhlI | ACTAGT | 1 cut(s) | 1742 |
| AjiI | CACGTC | 2 cut(s) | 518, 1340 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 637, 669 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2141, 2173 |
| Alw21I | GWGCWC | 4 cut(s) | 340, 544, 814, 2730 |
| Alw26I | GTCTC | 6 cut(s) | 122, 381, 411, 684, 2026, 2161 |
| Alw44I | GTGCAC | 2 cut(s) | 540, 810 |
| AlwI | GGATC | 9 cut(s) | 56, 433, 483, 496, 850, 1094, 1250, 1403, 2245 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1697 |
| Ama87I | CYCGRG | 2 cut(s) | 313, 333 |
| AoxI | GGCC | 8 cut(s) | 34, 179, 433, 835, 1051, 1369, 1860, 2609 |
| ApaLI | GTGCAC | 2 cut(s) | 540, 810 |
| ApeKI | GCWGC | 9 cut(s) | 872, 1172, 1604, 1772, 2024, 2191, 2194, 2215, 2675 |
| ApoI | RAATTY | 5 cut(s) | 296, 1888, 2301, 2528, 2581 |
| AseI | ATTAAT | 1 cut(s) | 2615 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 221 |
| AspA2I | CCTAGG | 1 cut(s) | 1064 |
| AspLEI | GCGC | 1 cut(s) | 596 |
| AsuC2I | CCSGG | 3 cut(s) | 314, 315, 2739 |
| AsuHPI | GGTGA | 6 cut(s) | 1053, 1383, 2015, 2352, 2753, 2789 |
| AvaI | CYCGRG | 2 cut(s) | 313, 333 |
| AvaII | GGWCC | 6 cut(s) | 950, 962, 1025, 1853, 1936, 1994 |
| AvrII | CCTAGG | 1 cut(s) | 1064 |
| AxyI | CCTNAGG | 1 cut(s) | 66 |
| BaeGI | GKGCMC | 3 cut(s) | 544, 734, 814 |
| BamHI | GGATCC | 1 cut(s) | 488 |
| BanI | GGYRCC | 2 cut(s) | 593, 1615 |
| BbrPI | CACGTG | 1 cut(s) | 2731 |
| Bbv12I | GWGCWC | 4 cut(s) | 340, 544, 814, 2730 |
| BbvI | GCAGC | 9 cut(s) | 859, 1159, 1591, 1759, 2011, 2178, 2206, 2227, 2662 |
| BccI | CCATC | 8 cut(s) | 730, 926, 1111, 1361, 1441, 1679, 1737, 2596 |
| BceAI | ACGGC | 2 cut(s) | 1364, 2457 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BclI | TGATCA | 1 cut(s) | 1000 |
| BcnI | CCSGG | 3 cut(s) | 314, 315, 2739 |
| BcoDI | GTCTC | 6 cut(s) | 122, 381, 411, 684, 2026, 2161 |
| BcuI | ACTAGT | 1 cut(s) | 1742 |
| BfaI | CTAG | 8 cut(s) | 447, 1049, 1065, 1743, 1883, 2205, 2547, 2757 |
| BfmI | CTRYAG | 3 cut(s) | 2161, 2192, 2634 |
| BfoI | RGCGCY | 1 cut(s) | 597 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglII | AGATCT | 1 cut(s) | 2395 |
| BisI | GCNGC | 9 cut(s) | 873, 1173, 1605, 1773, 2025, 2192, 2195, 2216, 2676 |
| BlnI | CCTAGG | 1 cut(s) | 1064 |
| BlpI | GCTNAGC | 1 cut(s) | 2446 |
| BlsI | GCNGC | 9 cut(s) | 874, 1174, 1606, 1774, 2026, 2193, 2196, 2217, 2677 |
| Bme18I | GGWCC | 6 cut(s) | 950, 962, 1025, 1853, 1936, 1994 |
| BmeT110I | CYCGRG | 2 cut(s) | 313, 333 |
| BmgBI | CACGTC | 2 cut(s) | 518, 1340 |
| BmrI | ACTGGG | 2 cut(s) | 830, 2746 |
| BmsI | GCATC | 7 cut(s) | 332, 560, 872, 1612, 1795, 2441, 2687 |
| BmuI | ACTGGG | 2 cut(s) | 830, 2746 |
| BoxI | GACNNNNGTC | 3 cut(s) | 393, 1956, 2283 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 142, 174, 769, 801 |
| BpmI | CTGGAG | 2 cut(s) | 405, 2241 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2446 |
| BpuEI | CTTGAG | 3 cut(s) | 225, 264, 1997 |
| BpuMI | CCSGG | 3 cut(s) | 314, 315, 2739 |
| BsaAI | YACGTR | 2 cut(s) | 1418, 2731 |
| BsaBI | GATNNNNATC | 4 cut(s) | 99, 322, 351, 1113 |
| BsaHI | GRCGYC | 2 cut(s) | 310, 594 |
| BsaI | GGTCTC | 2 cut(s) | 381, 2026 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2141, 2171, 2239, 2269 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 29, 398, 959, 1343, 1685, 1735, 2042, 2479, 2607 |
| Bse1I | ACTGG | 9 cut(s) | 537, 825, 838, 1576, 1701, 1996, 2175, 2258, 2752 |
| Bse21I | CCTNAGG | 1 cut(s) | 66 |
| Bse3DI | GCAATG | 3 cut(s) | 1445, 2566, 2811 |
| Bse8I | GATNNNNATC | 4 cut(s) | 99, 322, 351, 1113 |
| BseGI | GGATG | 3 cut(s) | 551, 1729, 2588 |
| BseJI | GATNNNNATC | 4 cut(s) | 99, 322, 351, 1113 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 29, 398, 959, 1343, 1685, 1735, 2042, 2479, 2607 |
| BseMI | GCAATG | 3 cut(s) | 1445, 2566, 2811 |
| BseMII | CTCAG | 8 cut(s) | 57, 152, 471, 649, 800, 2109, 2210, 2460 |
| BseNI | ACTGG | 9 cut(s) | 537, 825, 838, 1576, 1701, 1996, 2175, 2258, 2752 |
| BseRI | GAGGAG | 1 cut(s) | 713 |
| BseSI | GKGCMC | 3 cut(s) | 544, 734, 814 |
| BseXI | GCAGC | 9 cut(s) | 859, 1159, 1591, 1759, 2011, 2178, 2206, 2227, 2662 |
| BseYI | CCCAGC | 1 cut(s) | 2508 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 8 cut(s) | 36, 181, 435, 837, 1053, 1371, 1862, 2611 |
| BshNI | GGYRCC | 2 cut(s) | 593, 1615 |
| BsiHKAI | GWGCWC | 4 cut(s) | 340, 544, 814, 2730 |
| BsiHKCI | CYCGRG | 2 cut(s) | 313, 333 |
| BsiSI | CCGG | 2 cut(s) | 314, 2738 |
| BslFI | GGGAC | 5 cut(s) | 1011, 1180, 1839, 2260, 2271 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 29, 398, 959, 1343, 1685, 1735, 2042, 2479, 2607 |
| BsmAI | GTCTC | 6 cut(s) | 122, 381, 411, 684, 2026, 2161 |
| BsmFI | GGGAC | 5 cut(s) | 1011, 1180, 1839, 2260, 2271 |
| BsmI | GAATGC | 6 cut(s) | 553, 565, 1151, 1323, 1470, 1674 |
| BsnI | GGCC | 8 cut(s) | 36, 181, 435, 837, 1053, 1371, 1862, 2611 |
| Bso31I | GGTCTC | 2 cut(s) | 381, 2026 |
| BsoBI | CYCGRG | 2 cut(s) | 313, 333 |
| Bsp1286I | GDGCHC | 5 cut(s) | 340, 544, 734, 814, 2730 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2446 |
| Bsp19I | CCATGG | 1 cut(s) | 597 |
| BspACI | CCGC | 7 cut(s) | 273, 1639, 1821, 2319, 2384, 2480, 2566 |
| BspANI | GGCC | 8 cut(s) | 36, 181, 435, 837, 1053, 1371, 1862, 2611 |
| BspCNI | CTCAG | 8 cut(s) | 58, 151, 470, 648, 799, 2110, 2211, 2459 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspMAI | CTGCAG | 2 cut(s) | 2196, 2638 |
| BspPI | GGATC | 9 cut(s) | 56, 433, 483, 496, 850, 1094, 1250, 1403, 2245 |
| BspQI | GCTCTTC | 2 cut(s) | 1475, 1506 |
| BspT107I | GGYRCC | 2 cut(s) | 593, 1615 |
| BspTNI | GGTCTC | 2 cut(s) | 381, 2026 |
| BsrDI | GCAATG | 3 cut(s) | 1445, 2566, 2811 |
| BsrI | ACTGG | 9 cut(s) | 537, 825, 838, 1576, 1701, 1996, 2175, 2258, 2752 |
| BssNI | GRCGYC | 2 cut(s) | 310, 594 |
| BssT1I | CCWWGG | 5 cut(s) | 373, 597, 1064, 1857, 1998 |
| Bst4CI | ACNGT | 3 cut(s) | 950, 1738, 2654 |
| Bst6I | CTCTTC | 5 cut(s) | 403, 409, 1475, 1506, 1587 |
| BstACI | GRCGYC | 2 cut(s) | 310, 594 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 548, 1622, 2336 |
| BstBAI | YACGTR | 2 cut(s) | 1418, 2731 |
| BstC8I | GCNNGC | 5 cut(s) | 623, 1055, 2022, 2115, 2634 |
| BstDSI | CCRYGG | 2 cut(s) | 597, 1380 |
| BstEII | GGTNACC | 1 cut(s) | 1634 |
| BstF5I | GGATG | 3 cut(s) | 551, 1729, 2588 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstH2I | RGCGCY | 1 cut(s) | 597 |
| BstHHI | GCGC | 1 cut(s) | 596 |
| BstMAI | GTCTC | 6 cut(s) | 122, 381, 411, 684, 2026, 2161 |
| BstNSI | RCATGY | 1 cut(s) | 2117 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 393, 1956, 2283 |
| BstPI | GGTNACC | 1 cut(s) | 1634 |
| BstSFI | CTRYAG | 3 cut(s) | 2161, 2192, 2634 |
| BstSLI | GKGCMC | 3 cut(s) | 544, 734, 814 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 9 cut(s) | 859, 1159, 1591, 1759, 2011, 2178, 2206, 2227, 2662 |
| BstX2I | RGATCY | 3 cut(s) | 488, 842, 2395 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1523 |
| BstYI | RGATCY | 3 cut(s) | 488, 842, 2395 |
| Bsu36I | CCTNAGG | 1 cut(s) | 66 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 8 cut(s) | 36, 181, 435, 837, 1053, 1371, 1862, 2611 |
| BtgI | CCRYGG | 2 cut(s) | 597, 1380 |
| BtrI | CACGTC | 2 cut(s) | 518, 1340 |
| BtsCI | GGATG | 3 cut(s) | 551, 1729, 2588 |
| BtsI | GCAGTG | 4 cut(s) | 326, 1695, 2289, 2575 |
| Cac8I | GCNNGC | 5 cut(s) | 623, 1055, 2022, 2115, 2634 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1697 |
| CfoI | GCGC | 1 cut(s) | 596 |
| Cfr9I | CCCGGG | 1 cut(s) | 313 |
| CseI | GACGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 4 cut(s) | 249, 1188, 1452, 2178 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 992, 1027, 1362, 1397 |
| CviAII | CATG | 6 cut(s) | 429, 598, 743, 899, 1357, 2114 |
| CviQI | GTAC | 4 cut(s) | 249, 1188, 1452, 2178 |
| DinI | GGCGCC | 1 cut(s) | 595 |
| DraI | TTTAAA | 2 cut(s) | 351, 1611 |
| Eam1104I | CTCTTC | 5 cut(s) | 403, 409, 1475, 1506, 1587 |
| EarI | CTCTTC | 5 cut(s) | 403, 409, 1475, 1506, 1587 |
| Eco130I | CCWWGG | 5 cut(s) | 373, 597, 1064, 1857, 1998 |
| Eco147I | AGGCCT | 1 cut(s) | 1053 |
| Eco31I | GGTCTC | 2 cut(s) | 381, 2026 |
| Eco47I | GGWCC | 6 cut(s) | 950, 962, 1025, 1853, 1936, 1994 |
| Eco57I | CTGAAG | 4 cut(s) | 837, 852, 1257, 1620 |
| Eco72I | CACGTG | 1 cut(s) | 2731 |
| Eco81I | CCTNAGG | 1 cut(s) | 66 |
| Eco88I | CYCGRG | 2 cut(s) | 313, 333 |
| Eco91I | GGTNACC | 1 cut(s) | 1634 |
| EcoO109I | RGGNCCY | 2 cut(s) | 34, 1861 |
| EcoO65I | GGTNACC | 1 cut(s) | 1634 |
| EcoRI | GAATTC | 1 cut(s) | 2301 |
| EcoT14I | CCWWGG | 5 cut(s) | 373, 597, 1064, 1857, 1998 |
| EcoT22I | ATGCAT | 2 cut(s) | 553, 565 |
| EgeI | GGCGCC | 1 cut(s) | 595 |
| EheI | GGCGCC | 1 cut(s) | 595 |
| ErhI | CCWWGG | 5 cut(s) | 373, 597, 1064, 1857, 1998 |
| FaeI | CATG | 6 cut(s) | 432, 601, 746, 902, 1360, 2117 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1746, 1778, 2339, 2371 |
| FaqI | GGGAC | 5 cut(s) | 1011, 1180, 1839, 2260, 2271 |
| FatI | CATG | 6 cut(s) | 428, 597, 742, 898, 1356, 2113 |
| FauI | CCCGC | 1 cut(s) | 2326 |
| FbaI | TGATCA | 1 cut(s) | 1000 |
| FblI | GTMKAC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 9 cut(s) | 873, 1173, 1605, 1773, 2025, 2192, 2195, 2216, 2676 |
| FokI | GGATG | 3 cut(s) | 538, 1716, 2575 |
| Fsp4HI | GCNGC | 9 cut(s) | 873, 1173, 1605, 1773, 2025, 2192, 2195, 2216, 2676 |
| FspBI | CTAG | 8 cut(s) | 447, 1049, 1065, 1743, 1883, 2205, 2547, 2757 |
| GlaI | GCGC | 1 cut(s) | 595 |
| GluI | GCNGC | 9 cut(s) | 873, 1173, 1605, 1773, 2025, 2192, 2195, 2216, 2676 |
| GsaI | CCCAGC | 1 cut(s) | 2512 |
| GsuI | CTGGAG | 2 cut(s) | 405, 2241 |
| HaeII | RGCGCY | 1 cut(s) | 597 |
| HaeIII | GGCC | 8 cut(s) | 36, 181, 435, 837, 1053, 1371, 1862, 2611 |
| HapII | CCGG | 2 cut(s) | 314, 2738 |
| HgaI | GACGC | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 596 |
| Hin1I | GRCGYC | 2 cut(s) | 310, 594 |
| Hin1II | CATG | 6 cut(s) | 432, 601, 746, 902, 1360, 2117 |
| Hin6I | GCGC | 1 cut(s) | 594 |
| HinP1I | GCGC | 1 cut(s) | 594 |
| HincII | GTYRAC | 1 cut(s) | 2769 |
| HindII | GTYRAC | 1 cut(s) | 2769 |
| HindIII | AAGCTT | 1 cut(s) | 2667 |
| HpaII | CCGG | 2 cut(s) | 314, 2738 |
| HphI | GGTGA | 6 cut(s) | 1053, 1383, 2015, 2352, 2753, 2789 |
| Hpy166II | GTNNAC | 5 cut(s) | 122, 542, 812, 1562, 2769 |
| Hpy8I | GTNNAC | 5 cut(s) | 122, 542, 812, 1562, 2769 |
| Hpy99I | CGWCG | 1 cut(s) | 1962 |
| HpyAV | CCTTC | 8 cut(s) | 54, 861, 1237, 1295, 1827, 2262, 2341, 2507 |
| HpyCH4III | ACNGT | 3 cut(s) | 950, 1738, 2654 |
| HpyCH4IV | ACGT | 6 cut(s) | 254, 517, 1339, 1417, 2151, 2730 |
| HpySE526I | ACGT | 6 cut(s) | 254, 517, 1339, 1417, 2151, 2730 |
| Hsp92I | GRCGYC | 2 cut(s) | 310, 594 |
| Hsp92II | CATG | 6 cut(s) | 432, 601, 746, 902, 1360, 2117 |
| HspAI | GCGC | 1 cut(s) | 594 |
| KasI | GGCGCC | 1 cut(s) | 593 |
| Ksp22I | TGATCA | 1 cut(s) | 1000 |
| LguI | GCTCTTC | 2 cut(s) | 1475, 1506 |
| LmnI | GCTCC | 4 cut(s) | 700, 739, 980, 1780 |
| Lsp1109I | GCAGC | 9 cut(s) | 859, 1159, 1591, 1759, 2011, 2178, 2206, 2227, 2662 |
| LweI | GCATC | 7 cut(s) | 332, 560, 872, 1612, 1795, 2441, 2687 |
| MaeI | CTAG | 8 cut(s) | 447, 1049, 1065, 1743, 1883, 2205, 2547, 2757 |
| MaeII | ACGT | 6 cut(s) | 254, 517, 1339, 1417, 2151, 2730 |
| MaeIII | GTNAC | 3 cut(s) | 1418, 1634, 1738 |
| MflI | RGATCY | 3 cut(s) | 488, 842, 2395 |
| MhlI | GDGCHC | 5 cut(s) | 340, 544, 734, 814, 2730 |
| Mly113I | GGCGCC | 1 cut(s) | 594 |
| MlyI | GAGTC | 7 cut(s) | 124, 230, 413, 787, 2089, 2242, 2795 |
| MmeI | TCCRAC | 4 cut(s) | 1757, 2117, 2370, 2406 |
| Mph1103I | ATGCAT | 2 cut(s) | 553, 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 221 |
| MseI | TTAA | 6 cut(s) | 8, 350, 1610, 1718, 1901, 2615 |
| MspA1I | CMGCKG | 7 cut(s) | 872, 1172, 1823, 2054, 2218, 2321, 2480 |
| MspI | CCGG | 2 cut(s) | 314, 2738 |
| Mva1269I | GAATGC | 6 cut(s) | 553, 565, 1151, 1323, 1470, 1674 |
| MvnI | CGCG | 1 cut(s) | 441 |
| NarI | GGCGCC | 1 cut(s) | 594 |
| NciI | CCSGG | 3 cut(s) | 314, 315, 2739 |
| NcoI | CCATGG | 1 cut(s) | 597 |
| NlaIII | CATG | 6 cut(s) | 432, 601, 746, 902, 1360, 2117 |
| NsiI | ATGCAT | 2 cut(s) | 553, 565 |
| NspI | RCATGY | 1 cut(s) | 2117 |
| PaeI | GCATGC | 1 cut(s) | 2117 |
| PaeR7I | CTCGAG | 1 cut(s) | 333 |
| PceI | AGGCCT | 1 cut(s) | 1053 |
| PciSI | GCTCTTC | 2 cut(s) | 1475, 1506 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 130 |
| PctI | GAATGC | 6 cut(s) | 553, 565, 1151, 1323, 1470, 1674 |
| PdmI | GAANNNNTTC | 1 cut(s) | 221 |
| PfeI | GAWTC | 9 cut(s) | 360, 443, 574, 670, 751, 1082, 1385, 2325, 2402 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 959 |
| PfoI | TCCNGGA | 3 cut(s) | 382, 554, 577 |
| PkrI | GCNGC | 9 cut(s) | 874, 1174, 1606, 1774, 2026, 2193, 2196, 2217, 2677 |
| PleI | GAGTC | 7 cut(s) | 124, 230, 413, 786, 2089, 2242, 2794 |
| PluTI | GGCGCC | 1 cut(s) | 597 |
| PmaCI | CACGTG | 1 cut(s) | 2731 |
| PmlI | CACGTG | 1 cut(s) | 2731 |
| PpsI | GAGTC | 7 cut(s) | 124, 230, 413, 786, 2089, 2242, 2794 |
| Ppu21I | YACGTR | 2 cut(s) | 1418, 2731 |
| PshAI | GACNNNNGTC | 3 cut(s) | 393, 1956, 2283 |
| PshBI | ATTAAT | 1 cut(s) | 2615 |
| Psp1406I | AACGTT | 1 cut(s) | 2151 |
| PspCI | CACGTG | 1 cut(s) | 2731 |
| PspEI | GGTNACC | 1 cut(s) | 1634 |
| PspFI | CCCAGC | 1 cut(s) | 2508 |
| PspXI | VCTCGAGB | 1 cut(s) | 333 |
| PstI | CTGCAG | 2 cut(s) | 2196, 2638 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1697 |
| PsuI | RGATCY | 3 cut(s) | 488, 842, 2395 |
| PvuII | CAGCTG | 4 cut(s) | 872, 1172, 2054, 2218 |
| RsaI | GTAC | 4 cut(s) | 250, 1189, 1453, 2179 |
| RsaNI | GTAC | 4 cut(s) | 249, 1188, 1452, 2178 |
| SapI | GCTCTTC | 2 cut(s) | 1475, 1506 |
| SaqAI | TTAA | 6 cut(s) | 8, 350, 1610, 1718, 1901, 2615 |
| SatI | GCNGC | 9 cut(s) | 873, 1173, 1605, 1773, 2025, 2192, 2195, 2216, 2676 |
| SchI | GAGTC | 7 cut(s) | 124, 230, 413, 787, 2089, 2242, 2795 |
| SduI | GDGCHC | 5 cut(s) | 340, 544, 734, 814, 2730 |
| SfaNI | GCATC | 7 cut(s) | 332, 560, 872, 1612, 1795, 2441, 2687 |
| SfcI | CTRYAG | 3 cut(s) | 2161, 2192, 2634 |
| SfoI | GGCGCC | 1 cut(s) | 595 |
| Sfr274I | CTCGAG | 1 cut(s) | 333 |
| SinI | GGWCC | 6 cut(s) | 950, 962, 1025, 1853, 1936, 1994 |
| SlaI | CTCGAG | 1 cut(s) | 333 |
| SmaI | CCCGGG | 1 cut(s) | 315 |
| SmiI | ATTTAAAT | 1 cut(s) | 351 |
| SmlI | CTYRAG | 4 cut(s) | 240, 279, 333, 1976 |
| SmoI | CTYRAG | 4 cut(s) | 240, 279, 333, 1976 |
| SpeI | ACTAGT | 1 cut(s) | 1742 |
| SphI | GCATGC | 1 cut(s) | 2117 |
| SseBI | AGGCCT | 1 cut(s) | 1053 |
| SsiI | CCGC | 7 cut(s) | 273, 1639, 1821, 2319, 2384, 2480, 2566 |
| SspDI | GGCGCC | 1 cut(s) | 593 |
| SspMI | CTAG | 8 cut(s) | 447, 1049, 1065, 1743, 1883, 2205, 2547, 2757 |
| StuI | AGGCCT | 1 cut(s) | 1053 |
| StyI | CCWWGG | 5 cut(s) | 373, 597, 1064, 1857, 1998 |
| SwaI | ATTTAAAT | 1 cut(s) | 351 |
| TaaI | ACNGT | 3 cut(s) | 950, 1738, 2654 |
| TaiI | ACGT | 6 cut(s) | 257, 520, 1342, 1420, 2154, 2733 |
| TaqI | TCGA | 4 cut(s) | 103, 334, 345, 656 |
| TatI | WGTACW | 3 cut(s) | 248, 1187, 2177 |
| TfiI | GAWTC | 9 cut(s) | 360, 443, 574, 670, 751, 1082, 1385, 2325, 2402 |
| Tru1I | TTAA | 6 cut(s) | 8, 350, 1610, 1718, 1901, 2615 |
| Tru9I | TTAA | 6 cut(s) | 8, 350, 1610, 1718, 1901, 2615 |
| TseI | GCWGC | 9 cut(s) | 872, 1172, 1604, 1772, 2024, 2191, 2194, 2215, 2675 |
| TspDTI | ATGAA | 9 cut(s) | 6, 674, 896, 1089, 1158, 1377, 1633, 2360, 2655 |
| TspGWI | ACGGA | 2 cut(s) | 353, 1189 |
| TspMI | CCCGGG | 1 cut(s) | 313 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 959 |
| VneI | GTGCAC | 2 cut(s) | 540, 810 |
| VpaK11BI | GGWCC | 6 cut(s) | 950, 962, 1025, 1853, 1936, 1994 |
| VspI | ATTAAT | 1 cut(s) | 2615 |
| XapI | RAATTY | 5 cut(s) | 296, 1888, 2301, 2528, 2581 |
| XceI | RCATGY | 1 cut(s) | 2117 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 380, 2182 |
| XhoI | CTCGAG | 1 cut(s) | 333 |
| XmaI | CCCGGG | 1 cut(s) | 313 |
| XmaJI | CCTAGG | 1 cut(s) | 1064 |
| XmiI | GTMKAC | 1 cut(s) | 121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 221 |
| XspI | CTAG | 8 cut(s) | 447, 1049, 1065, 1743, 1883, 2205, 2547, 2757 |
| Zsp2I | ATGCAT | 2 cut(s) | 553, 565 |