RLG00000022152

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011914
Physical Location & Seq
Forward (+)
81379459 .. 81383850
4392 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022152

Sequence Viewer

Length: 2796 bp
ATGGAATTAAAAGTTTCATCTCCAAAACCAGGTGGCCTTTCTCCTTCTGATTGTGTTAGTGAACCTGAGGAGAAGGAAGTTAGTGATGACGACGATGATGATCGAAATCACAAACATCGTAGACGAGATACTCGTTCTCAGTCTTTGGAGAGAGATAGCCTCGATCAAGTTATAACAAGGCCATACAGAAAAAGGAATAAACCTTTTGCGAATGGGCACTCTTTCAGAGATAATGACTCCCAAGCGAATACACCATGGAAAAATTATAATTCCACTGCTTTTGAGAAAGACTTTTGTGTAAAGTTTGATAAAAGACGCCCAGGTTCAACATCACTGCCTCGACCACCTTTTGATTTAAATCAAAGGATGCGGGCAAACCAAGCATTCCCTGGAGACCTTGGTCCTGGTAGGGGAAGAGGAAGGGACTCTGGACCATGGAGCCAACGTGATTCTAGGTTCAGCTCTGATATTGCATCTCAATTGGTTCCTCCAAGTATGTTTGCTGGACGGGGATTGCCGAATGTTTCCAATCCACAAAGTGCGTCCTGGAATGCATTTGGACTGCTTCCAGGAGTACCAAACGGTGGCCTGGATACACTACATTCAATTGGGTTACAAGGTACACTCAGACCACCAATCCATTCTTCTTTGAACATGGGTATTCCTCGCCAAAGATGTAGAGACTTTGAGGAGCGCGGGTTTTGTCTAAGAGGGGACATGTGTCCAATGGAACATGGTGTCAATCGAATCGTTGTTGAAGATGTTCAGAGTCTTTCTCAGTTCAACCTTCCTGTTTCACTTCCAAGTGCACACCTACTTGGAAAACCCACTGGTCCCGGAACTCTACCATCAGTCAGTACATCTTCAACTACATTGATGAATAGCAAAGGATTGCATAGTAAAACGAGCAAGTCTAGTGTCACTGATGATGCTTCTTTGGCTGGAGCTGATTTGTATGACCCTGATCAACCTTTGTGGAATAATAATGGTCCTGAAACCTCAAATACAATTTTAGGTCTTCAGTCACCTAGGAATGATGAAACTGATTCCTTATCAAATGATGATCCTTCTGACCGTCATCAAGCCAGATTATGTGATAATGCAGATAATGAATGCCCAATTAGAACTGTTGGAACGGCTGCTGGTTCACAGAGTACAAGCATGTCAGTCTGGGGGAGAATTGGTAGCTCAAAAAATAGATCAGATGTGAAGGAGAAAATTAATCCTACAGTAAATTATTCAGATCATCCTGAGAATGAAACTAAGGAGTCATTAGTCAGCATTCAGAATCAGCAACGTCAAGGAAAGCGTATCATTGCAGAGGATGCGGCTCCCAAACCCCTAGATTCATTAGCCAAGAGACCATATGATACCATGCGTAATGTTCGTAAACCATCTCAGAAAGCATTACGTACTCTATTTGTCAACGGGATTCCTCAGAAAAGCAACAGAAGGGAGGCCCTTGTTTCTCATTTTCAAAAATTTGGAGAGATTGTGGACATTTATATTCCATCGAATAGTGAGCGAGCTTTTGTCCAGTTTTCCAAGAGAGAAGAGGCTGAAGCTGCTTTAAAGGCACCTGATGCTGTAATGGGTAATCGTTTTATCAAGTTGTGGTGGGCAAATCGTGATAGCGTTCCGGAGGATGGCACAGGCAATGCTAATATTGTTTCTGAAAACTCCCCTGGTTTGATAGCTGTTTCAGTTCCACTCCATTCATCTGTTTCTAGCGTTAGCAAGGATAATCATCAATCTGCTTCTTCAAAGGGTGGTATGGTTCATGCAACTGATTCTTCTCTACCATCCTCTGATAATTCTAAGCCTGTAATCTCAAATGGTCCCAAGGCTCCACCTCTGCAGAAGAAGTTAGAAAATTTAGAGCAGTTAAAGGAGGAACTTCGTAAGAAGCAAGAAATGCTGGACCAGAAAAGGAACGACTTTCGTCGCCAGTTGTACAAGCTTGAGAAACAAGCTGGTCCGAAGGTTGAGGCAGACGCAGAGCTAGCTGCCAAGAGACGCAAAGTGGGATTAGCAGCTGACATTGGTAAAGTTGCTACTCTGAGTTCCACCAGTCCTGCTCCTGTGTCAACACTGCATGATGAGATATTGACTGATAAAAACACATCGGGGGAAACCATTGTCTCCTATAGTCCTAAAACAAGTACAACTACGGCACTACAGCAATCCCCTAGCTTGAAGTATCAGACAATTCGTCCATTAGCACCACTAGGGACTCCTGTTCCACTGAATCGATACAAATTAGACAATCGTCCTACTGGATTTAGAATCCTTCCTCCTTTACCATCTGGATTTGCAAATGTTGCTGTTATGAAGGAACACTTTGCACCATATGGTGATATCTCTGATATGGAGTTAGAAGATCTGGAATCCCGTGATAGTGGTAGTGAGTTGGACGTATCAAAATCAAAGGAATGCTCAGCTCGTATAACTTTTGCAACACGTCGTTCAGCAGAGAAAGCATTTCTCAATGGTAAATGCTGGGAAGGGTGCGACTTAAAATTTGTGTGGTTGACATCTAGTAACTCCAGCAATGACCGAAATGGTGGGGAAAAATCTCCATCCACCACTCCTAGGGGGCCATTATCAGCTGATGTTCAGCCTGCAGATAAGCTAGCATGCACTACTTCCCATGATGCAGCTGCATCAGGCGATGCAGAATCTGAACATTCTGAAAGAAAAGGTGGTGTTGAGCACATGGAACTGGGTGAACCTTCTGAGTTTAGTTCAAGCCCTACGTCTCAGGTGAAAGAGTCATCTAAAGGCGATGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

932

Amino Acids

101.77

Weight (kDa)

7.9

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 473 - 536 6.5e-08 RNA recognition motif
Nup35_RRM_2 PF14605 474 - 524 1.2e-06 Nup53/35/40-type RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 173, 267
AccB1I GGYRCC 1 cut(s) 1576
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 121
AccII CGCG 1 cut(s) 696
AccIII TCCGGA 1 cut(s) 1639
AciI CCGC 3 cut(s) 370, 696, 1328
AclWI GGATC 1 cut(s) 1058
AcsI RAATTY 3 cut(s) 1481, 1873, 2519
AcuI CTGAAG 2 cut(s) 1004, 1581
AcyI GRCGYC 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 7 cut(s) 576, 622, 859, 1156, 1414, 1955, 2164
AfiI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
AflIII ACRYGT 2 cut(s) 717, 2459
AhdI GACNNNNNGTC 1 cut(s) 2211
AjiI CACGTC 1 cut(s) 2462
AjnI CCWGG 8 cut(s) 28, 319, 388, 403, 545, 568, 588, 1684
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
Alw21I GWGCWC 2 cut(s) 811, 2715
Alw26I GTCTC 6 cut(s) 387, 675, 1354, 2008, 2146, 2763
Alw44I GTGCAC 1 cut(s) 807
AlwI GGATC 1 cut(s) 1058
AlwNI CAGNNNCTG 1 cut(s) 2681
Aor13HI TCCGGA 1 cut(s) 1639
AoxI GGCC 5 cut(s) 34, 179, 586, 1458, 2597
ApaLI GTGCAC 1 cut(s) 807
ApeKI GCWGC 6 cut(s) 1139, 1565, 2006, 2033, 2657, 2660
ApoI RAATTY 3 cut(s) 1481, 1873, 2519
ArsI GACNNNNNNTTYG 2 cut(s) 2504, 2536
AseI ATTAAT 1 cut(s) 1221
Asp700I GAANNNNTTC 1 cut(s) 762
AspA2I CCTAGG 2 cut(s) 1028, 2591
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 9 cut(s) 401, 431, 833, 989, 1459, 1838, 1921, 1976, 2597
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 4 cut(s) 1017, 2366, 2738, 2776
AsuNHI GCTAGC 2 cut(s) 2002, 2632
AvaII GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
AvrII CCTAGG 2 cut(s) 1028, 2591
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 2 cut(s) 219, 811
BanI GGYRCC 1 cut(s) 1576
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 2 cut(s) 811, 2715
BbvI GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BccI CCATC 7 cut(s) 856, 1402, 1519, 1640, 1810, 2311, 2587
BceAI ACGGC 2 cut(s) 1152, 2187
BciT130I CCWGG 8 cut(s) 30, 321, 390, 405, 547, 570, 590, 1686
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 6 cut(s) 387, 675, 1354, 2008, 2146, 2763
BfmI CTRYAG 5 cut(s) 1227, 1856, 2146, 2177, 2622
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 2380
BisI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
BlnI CCTAGG 2 cut(s) 1028, 2591
BlpI GCTNAGC 1 cut(s) 2437
BlsI GCNGC 7 cut(s) 1141, 1330, 1567, 2008, 2035, 2659, 2662
Bme1390I CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
Bme18I GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
BmeRI GACNNNNNGTC 1 cut(s) 2211
BmgBI CACGTC 1 cut(s) 2462
BmgT120I GGNCC 9 cut(s) 401, 431, 833, 989, 1459, 1838, 1921, 1976, 2597
BmiI GGNNCC 8 cut(s) 440, 486, 835, 1332, 1578, 1840, 1848, 2598
BmrFI CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
BmrI ACTGGG 1 cut(s) 2732
BmsI GCATC 9 cut(s) 357, 482, 919, 1315, 1573, 2644, 2662, 2672, 2776
BmtI GCTAGC 2 cut(s) 2006, 2636
BmuI ACTGGG 1 cut(s) 2732
BoxI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
BpiI GAAGAC 1 cut(s) 1010
BplI GAGNNNNNCTC 4 cut(s) 144, 176, 760, 792
BpmI CTGGAG 3 cut(s) 411, 963, 2530
Bpu1102I GCTNAGC 1 cut(s) 2437
BpuEI CTTGAG 1 cut(s) 1982
BpuMI CCSGG 1 cut(s) 837
Bsa29I ATCGAT 1 cut(s) 2251
BsaAI YACGTR 1 cut(s) 1412
BsaBI GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BsaHI GRCGYC 1 cut(s) 316
BsaI GGTCTC 2 cut(s) 387, 1354
BsaJI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BsaWI WCCGGW 1 cut(s) 1639
BsaXI ACNNNNNCTCC 8 cut(s) 430, 460, 683, 713, 1168, 1198, 1479, 1509
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
Bse1I ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 3 cut(s) 1314, 1663, 2557
Bse8I GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BseAI TCCGGA 1 cut(s) 1639
BseBI CCWGG 8 cut(s) 30, 321, 390, 405, 547, 570, 590, 1686
BseCI ATCGAT 1 cut(s) 2251
BseDI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BseGI GGATG 6 cut(s) 372, 1246, 1330, 1651, 1802, 2579
BseJI GATNNNNATC 4 cut(s) 99, 105, 357, 1746
BseLI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
BseMI GCAATG 3 cut(s) 1314, 1663, 2557
BseNI ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
BseRI GAGGAG 2 cut(s) 83, 704
BseSI GKGCMC 2 cut(s) 219, 811
BseXI GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BseYI CCCAGC 1 cut(s) 2499
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 5 cut(s) 36, 181, 588, 1460, 2599
BshNI GGYRCC 1 cut(s) 1576
BshVI ATCGAT 1 cut(s) 2251
BsiHKAI GWGCWC 2 cut(s) 811, 2715
BsiSI CCGG 2 cut(s) 837, 1640
BslFI GGGAC 5 cut(s) 437, 728, 819, 1824, 2245
BslI CCNNNNNNNGG 5 cut(s) 29, 410, 584, 1646, 2592
BsmAI GTCTC 6 cut(s) 387, 675, 1354, 2008, 2146, 2763
BsmBI CGTCTC 2 cut(s) 2008, 2763
BsmFI GGGAC 5 cut(s) 437, 728, 819, 1824, 2245
BsmI GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
BsnI GGCC 5 cut(s) 36, 181, 588, 1460, 2599
Bso31I GGTCTC 2 cut(s) 387, 1354
Bsp1286I GDGCHC 3 cut(s) 219, 811, 2715
Bsp13I TCCGGA 1 cut(s) 1639
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
Bsp1720I GCTNAGC 1 cut(s) 2437
Bsp19I CCATGG 2 cut(s) 254, 434
BspACI CCGC 3 cut(s) 370, 696, 1328
BspANI GGCC 5 cut(s) 36, 181, 588, 1460, 2599
BspDI ATCGAT 1 cut(s) 2251
BspEI TCCGGA 1 cut(s) 1639
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 8 cut(s) 440, 486, 835, 1332, 1578, 1840, 1848, 2598
BspMAI CTGCAG 2 cut(s) 1860, 2626
BspOI GCTAGC 2 cut(s) 2006, 2636
BspPI GGATC 1 cut(s) 1058
BspT107I GGYRCC 1 cut(s) 1576
BspTNI GGTCTC 2 cut(s) 387, 1354
BsrDI GCAATG 3 cut(s) 1314, 1663, 2557
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 6 cut(s) 835, 1537, 1948, 2070, 2281, 2727
BssECI CCNNGG 9 cut(s) 254, 319, 388, 397, 434, 1028, 1684, 1842, 2591
BssMI GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
BssNI GRCGYC 1 cut(s) 316
BssT1I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Bst2UI CCWGG 8 cut(s) 30, 321, 390, 405, 547, 570, 590, 1686
Bst4CI ACNGT 4 cut(s) 584, 1076, 1129, 1231
Bst6I CTCTTC 2 cut(s) 409, 1548
BstACI GRCGYC 1 cut(s) 316
BstAPI GCANNNNNTGC 4 cut(s) 1325, 1583, 1915, 2321
BstAUI TGTACA 1 cut(s) 1953
BstBAI YACGTR 1 cut(s) 1412
BstC8I GCNNGC 6 cut(s) 372, 1527, 2004, 2622, 2634, 2638
BstDSI CCRYGG 2 cut(s) 254, 434
BstF5I GGATG 6 cut(s) 372, 1246, 1330, 1651, 1802, 2579
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 7 cut(s) 103, 166, 967, 1066, 1202, 1246, 2383
BstMAI GTCTC 6 cut(s) 387, 675, 1354, 2008, 2146, 2763
BstMBI GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
BstNI CCWGG 8 cut(s) 30, 321, 390, 405, 547, 570, 590, 1686
BstNSI RCATGY 3 cut(s) 721, 1165, 2640
BstPAI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
BstSCI CCNGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
BstSFI CTRYAG 5 cut(s) 1227, 1856, 2146, 2177, 2622
BstSLI GKGCMC 2 cut(s) 219, 811
BstSNI TACGTA 1 cut(s) 1412
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 2380
BstYI RGATCY 1 cut(s) 2380
Bsu15I ATCGAT 1 cut(s) 2251
Bsu36I CCTNAGG 1 cut(s) 66
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 5 cut(s) 36, 181, 588, 1460, 2599
BsuTUI ATCGAT 1 cut(s) 2251
BtgI CCRYGG 2 cut(s) 254, 434
BtgZI GCGATG 1 cut(s) 2685
BtrI CACGTC 1 cut(s) 2462
BtsCI GGATG 6 cut(s) 372, 1246, 1330, 1651, 1802, 2579
BtsI GCAGTG 3 cut(s) 273, 332, 2090
BtsIMutI CAGTG 6 cut(s) 273, 332, 828, 921, 2090, 2243
Cac8I GCNNGC 6 cut(s) 372, 1527, 2004, 2622, 2634, 2638
CaiI CAGNNNCTG 1 cut(s) 2681
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 9 cut(s) 401, 431, 833, 989, 1459, 1838, 1921, 1976, 2597
ClaI ATCGAT 1 cut(s) 2251
CseI GACGC 4 cut(s) 324, 531, 2003, 2025
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 7 cut(s) 575, 621, 858, 1155, 1413, 1954, 2163
CspCI CAANNNNNGTGG 4 cut(s) 262, 297, 956, 991
CviQI GTAC 7 cut(s) 575, 621, 858, 1155, 1413, 1954, 2163
DpnI GATC 7 cut(s) 102, 165, 966, 1065, 1201, 1245, 2382
DpnII GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
DraI TTTAAA 2 cut(s) 357, 1572
DraIII CACNNNGTG 1 cut(s) 539
DriI GACNNNNNGTC 1 cut(s) 2211
Eam1104I CTCTTC 2 cut(s) 409, 1548
Eam1105I GACNNNNNGTC 1 cut(s) 2211
EarI CTCTTC 2 cut(s) 409, 1548
Eco105I TACGTA 1 cut(s) 1412
Eco130I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Eco31I GGTCTC 2 cut(s) 387, 1354
Eco32I GATATC 1 cut(s) 2359
Eco47I GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
Eco57I CTGAAG 2 cut(s) 1004, 1581
Eco81I CCTNAGG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 1459
EcoRII CCWGG 8 cut(s) 28, 319, 388, 403, 545, 568, 588, 1684
EcoRV GATATC 1 cut(s) 2359
EcoT14I CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
Esp3I CGTCTC 2 cut(s) 2008, 2763
FalI AAGNNNNNCTT 2 cut(s) 2324, 2356
FaqI GGGAC 5 cut(s) 437, 728, 819, 1824, 2245
FauI CCCGC 2 cut(s) 363, 689
FauNDI CATATG 2 cut(s) 1366, 2350
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
FokI GGATG 6 cut(s) 379, 1233, 1337, 1658, 1789, 2566
Fsp4HI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
GlaI GCGC 1 cut(s) 695
GluI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
GsaI CCCAGC 1 cut(s) 2503
GsuI CTGGAG 3 cut(s) 411, 963, 2530
HaeIII GGCC 5 cut(s) 36, 181, 588, 1460, 2599
HapII CCGG 2 cut(s) 837, 1640
HgaI GACGC 4 cut(s) 324, 531, 2003, 2025
HhaI GCGC 1 cut(s) 696
Hin1I GRCGYC 1 cut(s) 316
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 3 cut(s) 1426, 2088, 2532
HindII GTYRAC 3 cut(s) 1426, 2088, 2532
HindIII AAGCTT 1 cut(s) 1958
HpaII CCGG 2 cut(s) 837, 1640
HphI GGTGA 4 cut(s) 1017, 2366, 2738, 2776
Hpy188III TCNNGA 7 cut(s) 429, 992, 1250, 1628, 1640, 2307, 2384
Hpy99I CGWCG 3 cut(s) 95, 1947, 2466
HpyCH4III ACNGT 4 cut(s) 584, 1076, 1129, 1231
HpyCH4IV ACGT 6 cut(s) 445, 1297, 1411, 2415, 2461, 2756
HpySE526I ACGT 6 cut(s) 445, 1297, 1411, 2415, 2461, 2756
Hsp92I GRCGYC 1 cut(s) 316
HspAI GCGC 1 cut(s) 694
Kpn2I TCCGGA 1 cut(s) 1639
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
LmnI GCTCC 6 cut(s) 438, 691, 944, 1336, 1852, 2083
Lsp1109I GCAGC 6 cut(s) 1126, 1552, 1993, 2045, 2647, 2669
LweI GCATC 9 cut(s) 357, 482, 919, 1315, 1573, 2644, 2662, 2672, 2776
MabI ACCWGGT 1 cut(s) 28
MaeII ACGT 6 cut(s) 445, 1297, 1411, 2415, 2461, 2756
MaeIII GTNAC 4 cut(s) 612, 919, 1023, 2540
MalI GATC 7 cut(s) 102, 165, 966, 1065, 1201, 1245, 2382
MboI GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
MfeI CAATTG 2 cut(s) 479, 606
MflI RGATCY 1 cut(s) 2380
MhlI GDGCHC 3 cut(s) 219, 811, 2715
MlyI GAGTC 6 cut(s) 230, 419, 778, 1277, 2227, 2780
MmeI TCCRAC 2 cut(s) 1111, 2391
Mph1103I ATGCAT 1 cut(s) 556
MroI TCCGGA 1 cut(s) 1639
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
MspA1I CMGCKG 3 cut(s) 2036, 2609, 2660
MspI CCGG 2 cut(s) 837, 1640
MspR9I CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
MunI CAATTG 2 cut(s) 479, 606
Mva1269I GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
MvaI CCWGG 8 cut(s) 30, 321, 390, 405, 547, 570, 590, 1686
MvnI CGCG 1 cut(s) 696
NciI CCSGG 1 cut(s) 837
NcoI CCATGG 2 cut(s) 254, 434
NdeI CATATG 2 cut(s) 1366, 2350
NdeII GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
NheI GCTAGC 2 cut(s) 2002, 2632
NlaIV GGNNCC 8 cut(s) 440, 486, 835, 1332, 1578, 1840, 1848, 2598
NmuCI GTSAC 2 cut(s) 919, 1023
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 3 cut(s) 721, 1165, 2640
PaeI GCATGC 1 cut(s) 2640
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 5 cut(s) 383, 556, 1118, 1281, 2438
PdmI GAANNNNTTC 1 cut(s) 762
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 3 cut(s) 545, 568, 835
PkrI GCNGC 7 cut(s) 1141, 1330, 1567, 2008, 2035, 2659, 2662
PleI GAGTC 6 cut(s) 230, 419, 777, 1276, 2227, 2779
PpsI GAGTC 6 cut(s) 230, 419, 777, 1276, 2227, 2779
Ppu21I YACGTR 1 cut(s) 1412
PscI ACATGT 1 cut(s) 717
PshAI GACNNNNGTC 4 cut(s) 399, 720, 1941, 2268
PshBI ATTAAT 1 cut(s) 1221
PsiI TTATAA 2 cut(s) 173, 267
Psp6I CCWGG 8 cut(s) 28, 319, 388, 403, 545, 568, 588, 1684
PspFI CCCAGC 1 cut(s) 2499
PspGI CCWGG 8 cut(s) 28, 319, 388, 403, 545, 568, 588, 1684
PspN4I GGNNCC 8 cut(s) 440, 486, 835, 1332, 1578, 1840, 1848, 2598
PspPI GGNCC 9 cut(s) 401, 431, 833, 989, 1459, 1838, 1921, 1976, 2597
PstI CTGCAG 2 cut(s) 1860, 2626
PstNI CAGNNNCTG 1 cut(s) 2681
PsuI RGATCY 1 cut(s) 2380
PvuII CAGCTG 3 cut(s) 2036, 2609, 2660
RsaI GTAC 7 cut(s) 576, 622, 859, 1156, 1414, 1955, 2164
RsaNI GTAC 7 cut(s) 575, 621, 858, 1155, 1413, 1954, 2163
SaqAI TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
SatI GCNGC 7 cut(s) 1140, 1329, 1566, 2007, 2034, 2658, 2661
Sau3AI GATC 7 cut(s) 100, 163, 964, 1063, 1199, 1243, 2380
Sau96I GGNCC 9 cut(s) 401, 431, 833, 989, 1459, 1838, 1921, 1976, 2597
SchI GAGTC 6 cut(s) 230, 419, 778, 1277, 2227, 2780
ScrFI CCNGG 9 cut(s) 30, 321, 390, 405, 547, 570, 590, 837, 1686
SduI GDGCHC 3 cut(s) 219, 811, 2715
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 9 cut(s) 357, 482, 919, 1315, 1573, 2644, 2662, 2672, 2776
SfcI CTRYAG 5 cut(s) 1227, 1856, 2146, 2177, 2622
SinI GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
SmiI ATTTAAAT 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 1961
SmoI CTYRAG 1 cut(s) 1961
SnaBI TACGTA 1 cut(s) 1412
SphI GCATGC 1 cut(s) 2640
SsiI CCGC 3 cut(s) 370, 696, 1328
SspI AATATT 1 cut(s) 1666
StyD4I CCNGG 9 cut(s) 28, 319, 388, 403, 545, 568, 588, 835, 1684
StyI CCWWGG 6 cut(s) 254, 397, 434, 1028, 1842, 2591
SwaI ATTTAAAT 1 cut(s) 357
TaaI ACNGT 4 cut(s) 584, 1076, 1129, 1231
TaiI ACGT 6 cut(s) 448, 1300, 1414, 2418, 2464, 2759
TaqI TCGA 6 cut(s) 103, 162, 340, 745, 1514, 2251
TaqII GACCGA 1 cut(s) 2571
TatI WGTACW 4 cut(s) 857, 1154, 1953, 2162
TauI GCSGC 1 cut(s) 1331
Tru1I TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
Tru9I TTAA 7 cut(s) 8, 356, 1221, 1571, 1886, 2516, 2794
TscAI CASTG 6 cut(s) 280, 339, 835, 928, 2097, 2250
TseFI GTSAC 2 cut(s) 919, 1023
TseI GCWGC 6 cut(s) 1139, 1565, 2006, 2033, 2657, 2660
Tsp45I GTSAC 2 cut(s) 919, 1023
TspDTI ATGAA 9 cut(s) 6, 893, 1053, 1125, 1272, 1338, 1707, 1769, 2345
TspRI CASTG 6 cut(s) 280, 339, 835, 928, 2097, 2250
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 807
VpaK11BI GGWCC 7 cut(s) 401, 431, 833, 989, 1838, 1921, 1976
VspI ATTAAT 1 cut(s) 1221
XapI RAATTY 3 cut(s) 1481, 1873, 2519
XceI RCATGY 3 cut(s) 721, 1165, 2640
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmaJI CCTAGG 2 cut(s) 1028, 2591
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.