Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Forward (+)

10389482 .. 10391703

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGATTACCGATCATCAATGGAGTCTTCGGAAACTCTAAGGAACAAGTGTGCCGCCTGTTACAGGCAATTCAACAAACTGGAACATTTGGTGGAGCACATGAAGATCTCTTATCATTCGGGTCATGAACCTACTTGTGGCGTTTGCAAGAAACATTGCAGGTCTTTTGAGTCCCTCCGAGAACATCTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATTTTCAGCCTTCGTGGATGCAGATTTTGCATGACGATACTCGAAAGCCCGAATTCTCGTAGAATCCATCAAGAGAGATGCCAATTCTCGAGCGTCAACTCTGGATTGACGACTCGAATGGCAGCTTTAGGCTTAAGAGATAAGGCCATGATCGACTACACGTCATCACGGTCTCCAAGAGTGGTTGCACTCTCTTGCAAGATGGTAGGAGGAGGAAGTGACGGGTCGTTGGATCTATGCGCGAGGGTTTGCATAACGGATGAGAGTGACAACGTTATCTTTCACACGTATGTGAAACCTTCGATGGCCGTGACTAGCTATAGGTACGAGACGACAGGGATACGCCCGGAAAATCTAAGGGACGCAATGCCATTAAAACAAGTACAAAGAAAGATTCAAGAGTTTCTTTGTAATGGAGAACCCATGTGGAAGATTCGTCCAAGAGGTGGAAAAGCGAGGATTCTCGTGGGGCATGGCCTCGATCACGATCTTGACCGCCTTCAACTTGAATATCCTTCTTCCATGATAAGGGATACTGCGAAATACCCACCGTTGATGAAAACAAGCAAGCTGAGCAACTCTCTCAAGTACTTAACCCAAGCCTATCTCGGGTATGATGTTCATTTTGGGATACAAGACCCTTATGAAGATTGTGTAGCGACGATGAGGCTTTACACGAGAATGAGATATCAGAAACACAAGATTGAAGCTTACCCTTTAGCCGCCGATGCGCAGAACCGTAGCAACCAGGTGGCTTGGAGGCAGAGTGAGGCCGAGAGGATGTCTCCTGATGAAATGCTCTCAATCTCTCGTTCCGACTATTACTGCTGGTGCTTAGACTCACTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

357

Amino Acids

41.02

Weight (kDa)

8.91

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	153 - 276	2.3e-06	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccII	CGCG	1 cut(s)	464
AciI	CCGC	3 cut(s)	54, 718, 945
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	3 cut(s)	548, 606, 812
AfiI	CCNNNNNNNGG	5 cut(s)	63, 137, 668, 750, 831
AflII	CTTAAG	1 cut(s)	355
AflIII	ACRYGT	2 cut(s)	381, 507
AgsI	TTSAA	5 cut(s)	73, 620, 725, 731, 929
AhdI	GACNNNNNGTC	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	969
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	347, 540, 793, 932, 1070
AluI	AGCT	5 cut(s)	347, 540, 793, 932, 1070
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	399, 545, 1011
AlwI	GGATC	1 cut(s)	462
Ama87I	CYCGRG	2 cut(s)	310, 830
AoxI	GGCC	5 cut(s)	194, 366, 528, 697, 993
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	464, 955
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	310, 830
BauI	CACGAG	2 cut(s)	686, 898
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	3 cut(s)	297, 418, 520
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	971
BciVI	GTATCC	3 cut(s)	555, 748, 846
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	399, 545, 1011
BfaI	CTAG	2 cut(s)	537, 1067
BfmI	CTRYAG	1 cut(s)	541
BfrI	CTTAAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	3 cut(s)	555, 748, 846
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	3 cut(s)	54, 345, 945
BlpI	GCTNAGC	1 cut(s)	794
BlsI	GCNGC	3 cut(s)	55, 346, 946
BmcAI	AGTACT	1 cut(s)	812
Bme1390I	CCNGG	2 cut(s)	569, 971
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	310, 830
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	569, 971
BmsI	GCATC	3 cut(s)	230, 290, 940
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	6 cut(s)	171, 203, 787, 819, 991, 1023
Bpu1102I	GCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	973, 1003
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 137, 668, 750, 831
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	154, 197, 594
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	971
BseGI	GGATG	3 cut(s)	245, 487, 1008
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	5 cut(s)	63, 137, 668, 750, 831
BseMI	GCAATG	3 cut(s)	154, 197, 594
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	5 cut(s)	196, 368, 530, 699, 995
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	310, 830
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	2 cut(s)	157, 596
BslI	CCNNNNNNNGG	5 cut(s)	63, 137, 668, 750, 831
BsmAI	GTCTC	3 cut(s)	399, 545, 1011
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	2 cut(s)	157, 596
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	5 cut(s)	196, 368, 530, 699, 995
Bso31I	GGTCTC	1 cut(s)	399
BsoBI	CYCGRG	2 cut(s)	310, 830
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
Bsp1720I	GCTNAGC	1 cut(s)	794
BspACI	CCGC	3 cut(s)	54, 718, 945
BspANI	GGCC	5 cut(s)	196, 368, 530, 699, 995
BspCNI	CTCAG	1 cut(s)	786
BspFNI	CGCG	1 cut(s)	464
BspHI	TCATGA	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	462
BspTI	CTTAAG	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	3 cut(s)	154, 197, 594
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
BssSI	CACGAG	2 cut(s)	686, 898
Bst2BI	CACGAG	2 cut(s)	686, 898
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	3 cut(s)	393, 774, 962
BstAFI	CTTAAG	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	4 cut(s)	38, 578, 794, 1057
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	245, 487, 1008
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	464, 955
BstKTI	GATC	6 cut(s)	14, 108, 375, 457, 706, 712
BstMAI	GTCTC	3 cut(s)	399, 545, 1011
BstMBI	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 795, 950
BstNI	CCWGG	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	567, 969
BstSFI	CTRYAG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	105, 454
BstYI	RGATCY	2 cut(s)	105, 454
BsuI	GTATCC	3 cut(s)	555, 748, 846
BsuRI	GGCC	5 cut(s)	196, 368, 530, 699, 995
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	245, 487, 1008
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	791
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	464, 955
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	2 cut(s)	304, 593
CsiI	ACCWGGT	1 cut(s)	969
Csp6I	GTAC	3 cut(s)	547, 605, 811
CviAII	CATG	7 cut(s)	100, 125, 253, 370, 646, 695, 745
CviQI	GTAC	3 cut(s)	547, 605, 811
DdeI	CTNAG	4 cut(s)	38, 578, 794, 1057
DpnI	GATC	6 cut(s)	13, 107, 374, 456, 705, 711
DpnII	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
DriI	GACNNNNNGTC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	528
Eam1105I	GACNNNNNGTC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	911
Eco88I	CYCGRG	2 cut(s)	310, 830
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	969
EcoRV	GATATC	1 cut(s)	911
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	7 cut(s)	103, 128, 256, 373, 649, 698, 748
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	157, 596
FatI	CATG	7 cut(s)	99, 124, 252, 369, 645, 694, 744
Fnu4HI	GCNGC	3 cut(s)	54, 345, 945
FokI	GGATG	3 cut(s)	252, 494, 1015
Fsp4HI	GCNGC	3 cut(s)	54, 345, 945
FspBI	CTAG	2 cut(s)	537, 1067
FspI	TGCGCA	1 cut(s)	954
GlaI	GCGC	2 cut(s)	463, 954
GluI	GCNGC	3 cut(s)	54, 345, 945
HaeIII	GGCC	5 cut(s)	196, 368, 530, 699, 995
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	2 cut(s)	304, 593
HhaI	GCGC	2 cut(s)	464, 955
Hin1II	CATG	7 cut(s)	103, 128, 256, 373, 649, 698, 748
Hin6I	GCGC	2 cut(s)	462, 953
HinP1I	GCGC	2 cut(s)	462, 953
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	930
HinfI	GANTC	8 cut(s)	23, 170, 285, 334, 616, 655, 682, 1061
HpaII	CCGG	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	31, 179, 915, 1039
Hpy188III	TCNNGA	8 cut(s)	125, 293, 310, 324, 620, 707, 713, 1010
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	4 cut(s)	242, 531, 731, 747
HpyCH4III	ACNGT	3 cut(s)	393, 774, 962
HpyCH4IV	ACGT	3 cut(s)	383, 495, 509
HpyCH4V	TGCA	8 cut(s)	147, 159, 216, 243, 252, 410, 420, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 795, 950
HpyF3I	CTNAG	4 cut(s)	38, 578, 794, 1057
HpySE526I	ACGT	3 cut(s)	383, 495, 509
Hsp92II	CATG	7 cut(s)	103, 128, 256, 373, 649, 698, 748
HspAI	GCGC	2 cut(s)	462, 953
Kzo9I	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	3 cut(s)	230, 290, 940
MabI	ACCWGGT	1 cut(s)	969
MaeI	CTAG	2 cut(s)	537, 1067
MaeII	ACGT	3 cut(s)	383, 495, 509
MaeIII	GTNAC	4 cut(s)	59, 440, 488, 532
MalI	GATC	6 cut(s)	13, 107, 374, 456, 705, 711
MboI	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
MboII	GAAGA	5 cut(s)	18, 115, 664, 732, 881
MflI	RGATCY	2 cut(s)	105, 454
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	68, 274, 305
MlyI	GAGTC	4 cut(s)	32, 179, 328, 1055
MmeI	TCCRAC	2 cut(s)	432, 1062
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	4 cut(s)	356, 596, 815, 1072
MslI	CAYNNNNRTG	3 cut(s)	510, 512, 902
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	569, 971
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	971
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	249, 795, 950
NciI	CCSGG	1 cut(s)	569
NdeII	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
NlaIII	CATG	7 cut(s)	103, 128, 256, 373, 649, 698, 748
NmeAIII	GCCGAG	1 cut(s)	1021
NmuCI	GTSAC	3 cut(s)	440, 488, 532
NsbI	TGCGCA	1 cut(s)	954
OliI	CACNNNNGTG	1 cut(s)	512
PaeR7I	CTCGAG	1 cut(s)	310
PagI	TCATGA	1 cut(s)	124
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	4 cut(s)	285, 616, 655, 682
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	3 cut(s)	55, 346, 946
PleI	GAGTC	4 cut(s)	31, 178, 328, 1055
PpsI	GAGTC	4 cut(s)	31, 178, 328, 1055
Ppu21I	YACGTR	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	969
PspGI	CCWGG	1 cut(s)	969
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	105, 454
RsaI	GTAC	3 cut(s)	548, 606, 812
RsaNI	GTAC	3 cut(s)	547, 605, 811
RseI	CAYNNNNRTG	3 cut(s)	510, 512, 902
SaqAI	TTAA	4 cut(s)	356, 596, 815, 1072
SatI	GCNGC	3 cut(s)	54, 345, 945
Sau3AI	GATC	6 cut(s)	11, 105, 372, 454, 703, 709
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	812
SchI	GAGTC	4 cut(s)	32, 179, 328, 1055
ScrFI	CCNGG	2 cut(s)	569, 971
SduI	GDGCHC	1 cut(s)	99
SexAI	ACCWGGT	1 cut(s)	969
SfaNI	GCATC	3 cut(s)	230, 290, 940
SfcI	CTRYAG	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	3 cut(s)	510, 512, 902
SmlI	CTYRAG	3 cut(s)	310, 355, 806
SmoI	CTYRAG	3 cut(s)	310, 355, 806
Sse9I	AATT	3 cut(s)	68, 274, 305
SsiI	CCGC	3 cut(s)	54, 718, 945
SspMI	CTAG	2 cut(s)	537, 1067
StyD4I	CCNGG	2 cut(s)	567, 969
TaaI	ACNGT	3 cut(s)	393, 774, 962
TaiI	ACGT	3 cut(s)	386, 498, 512
TaqI	TCGA	6 cut(s)	264, 311, 337, 375, 524, 702
TasI	AATT	3 cut(s)	68, 274, 305
TatI	WGTACW	2 cut(s)	604, 810
TauI	GCSGC	2 cut(s)	56, 947
TfiI	GAWTC	4 cut(s)	285, 616, 655, 682
Tru1I	TTAA	4 cut(s)	356, 596, 815, 1072
Tru9I	TTAA	4 cut(s)	356, 596, 815, 1072
TseFI	GTSAC	3 cut(s)	440, 488, 532
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	440, 488, 532
TspDTI	ATGAA	6 cut(s)	116, 141, 794, 833, 882, 1029
TspGWI	ACGGA	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	537, 1067
ZrmI	AGTACT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.