Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Reverse (-)

37696246 .. 37698126

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGACTACAGCAGACTTGAATCATCTGAAACTCTGAGGCAGTTCAACAAGATCGAGCACCTGGTGGAGCACATGAGAACCTCATACCACTCTTCTCATGAACCCTCGTGCGGAATCTGCAAGAAGCACTGCAGATCCTTTGAATCTCTCAGGGAACATGTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATATTCAGCAGCAGAGGATGCAAATACTGCTTATCTGTCTTTGATAGCCCTTATACTCTCAGGCTTCACCAGGACAGGTGCCAACTCTCCGGTGTAGCTGGATTAATTGGTCGGTTTGGTAACTTGGGCATTCGTGACAATCTGGATCATGGTAACTACACAAGAGGCAGTAGTGGTCAAACTGTTGCCCTTGCTTGCAAGATGGTTGGTGGGGGAAGTGATGGCTCCCTAGATCTCTGCGCTAGGGTTTGTCTCACTGATGAATATGATAACATCATCTTCCACACTTATGTAAAGCCACCCATGCCAGTCACAAACTATAGGTATGAAACAACTGGGATTCGTCCTGAATACTTGAGGGATGCAATGCCACAGAGGCAAGTGCAAAGAAAGATTCAAGACTTTTTGTGCAATGGGGAACCGATGTGGAAGATTCGACCTAGAGCAGGAAAAGCTAGAATTCTCGTGGGTCATGGTTTGGATCATGATCTCGACTCTCTGCAAATTGAATACCCAGCAGTCATGATGCGGGATACTGCAAAATATCCTCCACTGATGAAAACAAGCAAGCTCAGCAACTCACTGAAGTATCTAACACAAGCATATCTTGGGTATGACATTCAAAGTGGGATTCAAGACCCGTATGAGGATTGTGTTGCAACAATGAAGCTCTACATGCGAATGAGATCCCAAGCTCACAAGATAGATGCCTATCCCCTTGCTACTGATCCGCAAAACCGGAATAATTTCGCATCATGGCGGCAAGGTGAGCTTGAGAGGATGAGCCCTGAACAAATGTTGGACATTTCCAGGTCTGATTTCTACTGCTGGTGCTTGGACTGCCGGGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

350

Amino Acids

40.1

Weight (kDa)

8.29

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	145 - 290	5.2e-06	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AciI	CCGC	4 cut(s)	111, 724, 926, 955
AclWI	GGATC	5 cut(s)	129, 348, 684, 876, 917
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	800
AdeI	CACNNNGTG	1 cut(s)	64
AfiI	CCNNNNNNNGG	3 cut(s)	110, 641, 841
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	7 cut(s)	20, 46, 143, 593, 704, 818, 830
AjnI	CCWGG	3 cut(s)	60, 264, 1004
AluBI	AGCT	6 cut(s)	293, 650, 766, 865, 890, 967
AluI	AGCT	6 cut(s)	293, 650, 766, 865, 890, 967
Alw21I	GWGCWC	2 cut(s)	60, 72
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	5 cut(s)	129, 348, 684, 876, 917
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	654
AseI	ATTAAT	1 cut(s)	299
Asp700I	GAANNNNTTC	2 cut(s)	197, 941
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	1040
AsuHPI	GGTGA	2 cut(s)	254, 974
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	983
BauI	CACGAG	2 cut(s)	106, 659
Bbv12I	GWGCWC	2 cut(s)	60, 72
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	391, 410
BciT130I	CCWGG	3 cut(s)	62, 266, 1006
BciVI	GTATCC	2 cut(s)	721, 1036
BcnI	CCSGG	1 cut(s)	1040
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	4 cut(s)	425, 438, 636, 651
BfmI	CTRYAG	3 cut(s)	7, 130, 514
BfuI	GTATCC	2 cut(s)	721, 1036
BglI	GCCNNNNNGGC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	205, 956
BlpI	GCTNAGC	1 cut(s)	767
BlsI	GCNGC	2 cut(s)	206, 957
Bme1390I	CCNGG	4 cut(s)	62, 266, 1006, 1040
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	3 cut(s)	275, 421, 615
BmrFI	CCNGG	4 cut(s)	62, 266, 1006, 1040
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	5 cut(s)	203, 547, 711, 892, 956
BmuI	ACTGGG	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	571, 989
BpuMI	CCSGG	1 cut(s)	1040
BsaBI	GATNNNNATC	2 cut(s)	681, 906
BsaWI	WCCGGW	2 cut(s)	284, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 641, 841
Bse1I	ACTGG	2 cut(s)	503, 535
Bse3DI	GCAATG	3 cut(s)	170, 567, 613
Bse8I	GATNNNNATC	2 cut(s)	681, 906
BseBI	CCWGG	3 cut(s)	62, 266, 1006
BseGI	GGATG	3 cut(s)	218, 562, 981
BseJI	GATNNNNATC	2 cut(s)	681, 906
BseLI	CCNNNNNNNGG	3 cut(s)	110, 641, 841
BseMI	GCAATG	3 cut(s)	170, 567, 613
BseMII	CTCAG	4 cut(s)	26, 163, 268, 781
BseNI	ACTGG	2 cut(s)	503, 535
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	709
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	60, 72
BsiSI	CCGG	3 cut(s)	285, 934, 1039
BslI	CCNNNNNNNGG	3 cut(s)	110, 641, 841
BsmAI	GTCTC	1 cut(s)	452
BsmI	GAATGC	2 cut(s)	191, 324
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	60, 72, 983
Bsp143I	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
Bsp1720I	GCTNAGC	1 cut(s)	767
BspACI	CCGC	4 cut(s)	111, 724, 926, 955
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	4 cut(s)	27, 162, 267, 780
BspHI	TCATGA	3 cut(s)	97, 679, 717
BspLI	GGNNCC	3 cut(s)	275, 421, 615
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	5 cut(s)	129, 348, 684, 876, 917
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	170, 567, 613
BsrI	ACTGG	2 cut(s)	503, 535
BssMI	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
BssSI	CACGAG	2 cut(s)	106, 659
Bst2BI	CACGAG	2 cut(s)	106, 659
Bst2UI	CCWGG	3 cut(s)	62, 266, 1006
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	97
BstAPI	GCANNNNNTGC	2 cut(s)	213, 222
BstC8I	GCNNGC	2 cut(s)	391, 764
BstDEI	CTNAG	4 cut(s)	35, 149, 254, 767
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	218, 562, 981
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	8 cut(s)	54, 137, 343, 430, 679, 685, 884, 925
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
BstNI	CCWGG	3 cut(s)	62, 266, 1006
BstNSI	RCATGY	2 cut(s)	161, 874
BstSCI	CCNGG	4 cut(s)	60, 264, 1004, 1038
BstSFI	CTRYAG	3 cut(s)	7, 130, 514
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	3 cut(s)	134, 427, 881
BstYI	RGATCY	3 cut(s)	134, 427, 881
BsuI	GTATCC	2 cut(s)	721, 1036
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	218, 562, 981
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	4 cut(s)	127, 450, 746, 776
Cac8I	GCNNGC	2 cut(s)	391, 764
CciI	TCATGA	3 cut(s)	97, 679, 717
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	60
DdeI	CTNAG	4 cut(s)	35, 149, 254, 767
DpnI	GATC	8 cut(s)	53, 136, 342, 429, 678, 684, 883, 924
DpnII	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
DraIII	CACNNNGTG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	983
Eco57I	CTGAAG	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	654
EcoRII	CCWGG	3 cut(s)	60, 264, 1004
EcoT38I	GRGCYC	1 cut(s)	983
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 951, 983
FauI	CCCGC	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	205, 956
FokI	GGATG	3 cut(s)	225, 569, 988
FriOI	GRGCYC	1 cut(s)	983
Fsp4HI	GCNGC	2 cut(s)	205, 956
FspBI	CTAG	4 cut(s)	425, 438, 636, 651
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	2 cut(s)	205, 956
GsaI	CCCAGC	1 cut(s)	713
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	3 cut(s)	285, 934, 1039
HhaI	GCGC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HinfI	GANTC	8 cut(s)	20, 114, 143, 535, 589, 628, 689, 826
HpaII	CCGG	3 cut(s)	285, 934, 1039
HphI	GGTGA	2 cut(s)	254, 974
Hpy188I	TCNGA	3 cut(s)	28, 36, 1012
Hpy188III	TCNNGA	9 cut(s)	98, 329, 338, 542, 593, 680, 686, 718, 830
HpyCH4III	ACNGT	1 cut(s)	379
HpyF3I	CTNAG	4 cut(s)	35, 149, 254, 767
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
LmnI	GCTCC	2 cut(s)	67, 425
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	5 cut(s)	203, 547, 711, 892, 956
MabI	ACCWGGT	1 cut(s)	60
MaeI	CTAG	4 cut(s)	425, 438, 636, 651
MaeIII	GTNAC	4 cut(s)	314, 329, 347, 505
MalI	GATC	8 cut(s)	53, 136, 342, 429, 678, 684, 883, 924
MboI	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
MboII	GAAGA	3 cut(s)	84, 466, 637
MflI	RGATCY	3 cut(s)	134, 427, 881
MhlI	GDGCHC	3 cut(s)	60, 72, 983
MluCI	AATT	4 cut(s)	300, 654, 699, 940
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	975
MroXI	GAANNNNTTC	2 cut(s)	197, 941
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	483, 875
MspI	CCGG	3 cut(s)	285, 934, 1039
MspR9I	CCNGG	4 cut(s)	62, 266, 1006, 1040
Mva1269I	GAATGC	2 cut(s)	191, 324
MvaI	CCWGG	3 cut(s)	62, 266, 1006
NciI	CCSGG	1 cut(s)	1040
NdeII	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
NlaIV	GGNNCC	3 cut(s)	275, 421, 615
NmuCI	GTSAC	2 cut(s)	329, 505
NspI	RCATGY	2 cut(s)	161, 874
PagI	TCATGA	3 cut(s)	97, 679, 717
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	2 cut(s)	191, 324
PdmI	GAANNNNTTC	2 cut(s)	197, 941
PfeI	GAWTC	7 cut(s)	20, 114, 143, 535, 589, 628, 826
PkrI	GCNGC	2 cut(s)	206, 957
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
PscI	ACATGT	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	60, 264, 1004
PspFI	CCCAGC	1 cut(s)	709
PspGI	CCWGG	3 cut(s)	60, 264, 1004
PspN4I	GGNNCC	3 cut(s)	275, 421, 615
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	134, 427, 881
RseI	CAYNNNNRTG	2 cut(s)	483, 875
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	205, 956
Sau3AI	GATC	8 cut(s)	51, 134, 340, 427, 676, 682, 881, 922
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	4 cut(s)	62, 266, 1006, 1040
SduI	GDGCHC	3 cut(s)	60, 72, 983
SexAI	ACCWGGT	1 cut(s)	60
SfaNI	GCATC	5 cut(s)	203, 547, 711, 892, 956
SfcI	CTRYAG	3 cut(s)	7, 130, 514
SmiMI	CAYNNNNRTG	2 cut(s)	483, 875
SmlI	CTYRAG	2 cut(s)	550, 968
SmoI	CTYRAG	2 cut(s)	550, 968
Sse9I	AATT	4 cut(s)	300, 654, 699, 940
SsiI	CCGC	4 cut(s)	111, 724, 926, 955
SspMI	CTAG	4 cut(s)	425, 438, 636, 651
StyD4I	CCNGG	4 cut(s)	60, 264, 1004, 1038
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	54, 631, 687
TasI	AATT	4 cut(s)	300, 654, 699, 940
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	7 cut(s)	20, 114, 143, 535, 589, 628, 826
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	4 cut(s)	134, 457, 753, 783
TseFI	GTSAC	2 cut(s)	329, 505
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	2 cut(s)	329, 505
TspDTI	ATGAA	5 cut(s)	114, 471, 537, 767, 875
TspRI	CASTG	4 cut(s)	134, 457, 753, 783
VspI	ATTAAT	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	654
XceI	RCATGY	2 cut(s)	161, 874
XmnI	GAANNNNTTC	2 cut(s)	197, 941
XspI	CTAG	4 cut(s)	425, 438, 636, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.