Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Reverse (-)

85123268 .. 85124936

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTGCAATTGATTTTCAGGAACAAGTGTGCTGCATGCTTCAGGCAGTTCAACAAGATCGAGCACCTGGTGGAGCACATGAGAACCTCATACCACTCTTCTCATGAACCGTCGTGCGGAATCTGTAAGAAGCACTGCAGATCCTTTGAATCTCTCAGGGAACATGTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATATTTAGCAGCAGAGGGTGCAAATTCTGCTTATCTGTCTTTGATAGCCCTTATACTCTCAGGCTTCACCAGGACAGATGCCAGCTCTCCGGCGTCACTGGATTAATTGGTCGGTTTAGTAACTTGGGCATTCGTGACAATCTGGATCATGGTAACTACACAAGAGGCAGTAGTGGTCAAACTGTTGCCCTTGCTTGCAAGATGGTTGGTGGGGGAAGTGATGGCTCCCTAGATCTCTGCGGTAGGGTTTGTCTCACTGATGAATATGATAACATCATCTTCCACACTTATGTCAAGCCACCAATGCCAGTCACAAACTATAGGTATGAAACAACTGGGATTCGTCCTGAATACTTGAGGGACGCAATGCCACAGAGGCAAGTGCAAAAGAAGCTACAAGACTTTTTGTGCAATGGGGAACCAATGTGGAAGATTCGACCTAGAGCCGGAAAAGCTAGAATTCTTGTGGGTCATGGTTTGGATCATGATCTCGACTCTCTGCAAATTGAATACCCAGCACTCATGATCAGGGATACTGCAAAATATCCTCCACTGATGAAAACAAGCAAGCTCAGCAACTCACTCAAGTATCTAACACAAGCATATCTCGGGTATGACATTCAAAGTGGGATTCAAGACCCTTTTGAGGATTGTGTTGCAACAATGAAGCTTTACATGCGAATGAGATCCCAAGTTCACAAGATAGAGCCCTATCCACTTGCTACTGATCCGCAAAACCGAAATAATTTTGCATCGTGGCGGCAAAACGAGCTTGAAAGGATGAGCCCTGAACAAATGTTGGACATTTCCAGGTCTGATTTCTACTGCTGGTGCTTGGACCGCCGGGATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

351

Amino Acids

40.49

Weight (kDa)

8.78

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	117, 441, 932, 961, 1042
AclWI	GGATC	5 cut(s)	135, 354, 690, 882, 923
AcsI	RAATTY	2 cut(s)	224, 660
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	70
AfiI	CCNNNNNNNGG	3 cut(s)	116, 647, 847
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	6 cut(s)	52, 149, 710, 824, 836, 977
AjnI	CCWGG	3 cut(s)	66, 270, 1010
AluBI	AGCT	6 cut(s)	286, 595, 656, 772, 871, 973
AluI	AGCT	6 cut(s)	286, 595, 656, 772, 871, 973
Alw21I	GWGCWC	2 cut(s)	66, 78
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	5 cut(s)	135, 354, 690, 882, 923
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	32, 210
ApoI	RAATTY	2 cut(s)	224, 660
AseI	ATTAAT	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	173, 1039
AsuC2I	CCSGG	1 cut(s)	1046
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	809
AvaII	GGWCC	1 cut(s)	1039
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanII	GRGCYC	2 cut(s)	912, 989
Bbv12I	GWGCWC	2 cut(s)	66, 78
BbvI	GCAGC	2 cut(s)	19, 222
BccI	CCATC	2 cut(s)	397, 416
BciT130I	CCWGG	3 cut(s)	68, 272, 1012
BciVI	GTATCC	2 cut(s)	727, 1042
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	1046
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	3 cut(s)	431, 642, 657
BfmI	CTRYAG	2 cut(s)	136, 520
BfuI	GTATCC	2 cut(s)	727, 1042
BglI	GCCNNNNNGGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	33, 211, 962
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	3 cut(s)	34, 212, 963
Bme1390I	CCNGG	4 cut(s)	68, 272, 1012, 1046
Bme18I	GGWCC	1 cut(s)	1039
BmeT110I	CYCGRG	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	173, 1039
BmiI	GGNNCC	2 cut(s)	427, 621
BmrFI	CCNGG	4 cut(s)	68, 272, 1012, 1046
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	269, 962
BmuI	ACTGGG	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	773
BpuEI	CTTGAG	2 cut(s)	577, 770
BpuMI	CCSGG	1 cut(s)	1046
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 647, 847
Bse1I	ACTGG	3 cut(s)	304, 509, 541
Bse3DI	GCAATG	3 cut(s)	176, 573, 619
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	68, 272, 1012
BseGI	GGATG	1 cut(s)	987
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	3 cut(s)	116, 647, 847
BseMI	GCAATG	3 cut(s)	176, 573, 619
BseMII	CTCAG	3 cut(s)	169, 274, 787
BseNI	ACTGG	3 cut(s)	304, 509, 541
BseXI	GCAGC	2 cut(s)	19, 222
BseYI	CCCAGC	1 cut(s)	715
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	66, 78
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	3 cut(s)	291, 648, 1045
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	116, 647, 847
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	2 cut(s)	197, 330
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	809
Bsp1286I	GDGCHC	4 cut(s)	66, 78, 912, 989
Bsp143I	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
Bsp1720I	GCTNAGC	1 cut(s)	773
BspACI	CCGC	5 cut(s)	117, 441, 932, 961, 1042
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	3 cut(s)	168, 273, 786
BspHI	TCATGA	3 cut(s)	103, 685, 723
BspLI	GGNNCC	2 cut(s)	427, 621
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	5 cut(s)	135, 354, 690, 882, 923
BsrDI	GCAATG	3 cut(s)	176, 573, 619
BsrI	ACTGG	3 cut(s)	304, 509, 541
BssMI	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	68, 272, 1012
Bst4CI	ACNGT	2 cut(s)	111, 385
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	2 cut(s)	219, 228
BstC8I	GCNNGC	4 cut(s)	37, 284, 397, 770
BstDEI	CTNAG	3 cut(s)	155, 260, 773
BstF5I	GGATG	1 cut(s)	987
BstKTI	GATC	9 cut(s)	60, 143, 349, 436, 685, 691, 729, 890, 931
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
BstNI	CCWGG	3 cut(s)	68, 272, 1012
BstNSI	RCATGY	3 cut(s)	39, 167, 880
BstSCI	CCNGG	4 cut(s)	66, 270, 1010, 1044
BstSFI	CTRYAG	2 cut(s)	136, 520
BstV1I	GCAGC	2 cut(s)	19, 222
BstX2I	RGATCY	3 cut(s)	140, 433, 887
BstYI	RGATCY	3 cut(s)	140, 433, 887
BsuI	GTATCC	2 cut(s)	727, 1042
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	987
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	4 cut(s)	133, 297, 456, 752
Cac8I	GCNNGC	4 cut(s)	37, 284, 397, 770
CciI	TCATGA	3 cut(s)	103, 685, 723
Cfr13I	GGNCC	2 cut(s)	173, 1039
CseI	GACGC	2 cut(s)	283, 572
CsiI	ACCWGGT	1 cut(s)	66
CviAII	CATG	9 cut(s)	36, 79, 104, 164, 350, 674, 686, 724, 877
DdeI	CTNAG	3 cut(s)	155, 260, 773
DpnI	GATC	9 cut(s)	59, 142, 348, 435, 684, 690, 728, 889, 930
DpnII	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
DraIII	CACNNNGTG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	912, 989
Eco47I	GGWCC	1 cut(s)	1039
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	660
EcoRII	CCWGG	3 cut(s)	66, 270, 1010
EcoT38I	GRGCYC	2 cut(s)	912, 989
FaeI	CATG	9 cut(s)	39, 82, 107, 167, 353, 677, 689, 727, 880
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	9 cut(s)	35, 78, 103, 163, 349, 673, 685, 723, 876
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	33, 211, 962
FokI	GGATG	1 cut(s)	994
FriOI	GRGCYC	2 cut(s)	912, 989
Fsp4HI	GCNGC	3 cut(s)	33, 211, 962
FspBI	CTAG	3 cut(s)	431, 642, 657
GluI	GCNGC	3 cut(s)	33, 211, 962
GsaI	CCCAGC	1 cut(s)	719
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	3 cut(s)	291, 648, 1045
HgaI	GACGC	2 cut(s)	283, 572
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	9 cut(s)	39, 82, 107, 167, 353, 677, 689, 727, 880
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	6 cut(s)	120, 149, 541, 634, 695, 832
HpaII	CCGG	3 cut(s)	291, 648, 1045
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	1 cut(s)	1018
Hpy188III	TCNNGA	9 cut(s)	19, 104, 335, 344, 548, 686, 692, 724, 836
Hpy8I	GTNNAC	1 cut(s)	898
Hpy99I	CGWCG	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	111, 385
HpyF3I	CTNAG	3 cut(s)	155, 260, 773
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	9 cut(s)	39, 82, 107, 167, 353, 677, 689, 727, 880
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
LmnI	GCTCC	2 cut(s)	73, 431
Lsp1109I	GCAGC	2 cut(s)	19, 222
LweI	GCATC	2 cut(s)	269, 962
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	3 cut(s)	431, 642, 657
MaeIII	GTNAC	5 cut(s)	295, 320, 335, 353, 511
MalI	GATC	9 cut(s)	59, 142, 348, 435, 684, 690, 728, 889, 930
MboI	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
MboII	GAAGA	3 cut(s)	90, 472, 643
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	3 cut(s)	140, 433, 887
MhlI	GDGCHC	4 cut(s)	66, 78, 912, 989
MluCI	AATT	6 cut(s)	8, 224, 306, 660, 705, 946
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	981
MnlI	CCTC	7 cut(s)	97, 209, 359, 552, 570, 759, 841
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	2 cut(s)	489, 881
MspI	CCGG	3 cut(s)	291, 648, 1045
MspR9I	CCNGG	4 cut(s)	68, 272, 1012, 1046
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	2 cut(s)	197, 330
MvaI	CCWGG	3 cut(s)	68, 272, 1012
NciI	CCSGG	1 cut(s)	1046
NdeII	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
NlaIII	CATG	9 cut(s)	39, 82, 107, 167, 353, 677, 689, 727, 880
NlaIV	GGNNCC	2 cut(s)	427, 621
NmuCI	GTSAC	3 cut(s)	295, 335, 511
NspI	RCATGY	3 cut(s)	39, 167, 880
PaeI	GCATGC	1 cut(s)	39
PagI	TCATGA	3 cut(s)	103, 685, 723
PciI	ACATGT	1 cut(s)	163
PctI	GAATGC	2 cut(s)	197, 330
PfeI	GAWTC	5 cut(s)	120, 149, 541, 634, 832
PkrI	GCNGC	3 cut(s)	34, 212, 963
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PscI	ACATGT	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	305
Psp6I	CCWGG	3 cut(s)	66, 270, 1010
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	3 cut(s)	66, 270, 1010
PspN4I	GGNNCC	2 cut(s)	427, 621
PspPI	GGNCC	2 cut(s)	173, 1039
PstI	CTGCAG	1 cut(s)	140
PsuI	RGATCY	3 cut(s)	140, 433, 887
RseI	CAYNNNNRTG	2 cut(s)	489, 881
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	33, 211, 962
Sau3AI	GATC	9 cut(s)	57, 140, 346, 433, 682, 688, 726, 887, 928
Sau96I	GGNCC	2 cut(s)	173, 1039
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	4 cut(s)	68, 272, 1012, 1046
SduI	GDGCHC	4 cut(s)	66, 78, 912, 989
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	269, 962
SfcI	CTRYAG	2 cut(s)	136, 520
SinI	GGWCC	1 cut(s)	1039
SmiMI	CAYNNNNRTG	2 cut(s)	489, 881
SmlI	CTYRAG	2 cut(s)	556, 785
SmoI	CTYRAG	2 cut(s)	556, 785
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	6 cut(s)	8, 224, 306, 660, 705, 946
SsiI	CCGC	5 cut(s)	117, 441, 932, 961, 1042
SspMI	CTAG	3 cut(s)	431, 642, 657
StyD4I	CCNGG	4 cut(s)	66, 270, 1010, 1044
TaaI	ACNGT	2 cut(s)	111, 385
TaqI	TCGA	3 cut(s)	60, 637, 693
TasI	AATT	6 cut(s)	8, 224, 306, 660, 705, 946
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	5 cut(s)	120, 149, 541, 634, 832
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	4 cut(s)	140, 304, 463, 759
TseFI	GTSAC	3 cut(s)	295, 335, 511
TseI	GCWGC	2 cut(s)	32, 210
Tsp45I	GTSAC	3 cut(s)	295, 335, 511
TspDTI	ATGAA	5 cut(s)	120, 477, 543, 773, 881
TspRI	CASTG	4 cut(s)	140, 304, 463, 759
VpaK11BI	GGWCC	1 cut(s)	1039
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	2 cut(s)	224, 660
XceI	RCATGY	3 cut(s)	39, 167, 880
XspI	CTAG	3 cut(s)	431, 642, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.