Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Reverse (-)

85414423 .. 85416575

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG629200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGACTATAGCAGACCTGAGTCATCTGAAACTCTGAGGAACAAGTGTGCTGCATGCTTCAGGCAGTTCAACAAGATCGAGCACCTGGTGGAGCACATGAGAACCTCATACCACTCTTCTCATGAACCGTCGTGCGGAATCTGTAAGAAGCACTGCAGATCCTTTGAATCTCTCAGGGAACATGTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATATTTAGCAGCAGAGGATGCAAATTCTGCTTATCTGTCTTTGATAGCCCTAATACTCTCAGGCTTCACCAGGACAGATGCCAGCTCTCCGGCGTCACTGGATTAATTGGTCGGTTTGGTAACTTGGGCATTCGTGACAATCTGGATCATGGTAACTACACAAGAGGCAGTAGTGGTCAAACTGTTGCCCTTGCTTGCAAGATGGTTGGTGGGGGAAGTGATGGCTCCCTAGATCTCTGCGGTAGGGTTTGTCTCACTGATGAATATGATAACATCATCTTCCACACTTACGTCAAGCCACCAATGCCAGTCACAAACTATAGGTATGAAACAACTGGGATTCGTCCTGAATACTTGAGGGACGCAATGCCACAGAGGCAAGTGCAAAAGAAGCTACAAGACTTTTTGTGCAATGGGGAACCAATGTGGAAGATTCGACCTAGAGCCGGAAAAGCTAGAATTCTTGTGGGTCATGGTTTGGATCATGATCTCGACTCTCTGCAAATTGAATACCCAGCACTCATGATCAGGGATACTGCAAAATATCCTCCACTGATGAAAACAAGCAAGCTCAGCAACTCACTCAAGTATCTAACACAAGCATATCTCGGGTATGACATTCAAAGTGGGATTCAAGACCCCTATGAGGATTGTGTTGCAACAATGAAGCTTTACATGCGAATGAGATCCCAAGTTCACAAGATAGAGCCCTATCCACTTGCTAGTGATCCGCAAAACCGAAATAATTTTGCATCGTGGCGGCAAAACGAGCTTGAAAGGATGAGCCCTGAACAAATGTTGGACATTTCCAGGTCTGATTTCTACTGCTGGTGCTTGGACCGCCGGGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

357

Amino Acids

41.06

Weight (kDa)

8.61

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	135, 459, 950, 979, 1060
AclWI	GGATC	5 cut(s)	153, 372, 708, 900, 941
AcsI	RAATTY	2 cut(s)	242, 678
AcuI	CTGAAG	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	134, 665, 865
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	6 cut(s)	70, 167, 728, 842, 854, 995
AjnI	CCWGG	3 cut(s)	84, 288, 1028
AluBI	AGCT	6 cut(s)	304, 613, 674, 790, 889, 991
AluI	AGCT	6 cut(s)	304, 613, 674, 790, 889, 991
Alw21I	GWGCWC	2 cut(s)	84, 96
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	5 cut(s)	153, 372, 708, 900, 941
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	50, 228
ApoI	RAATTY	2 cut(s)	242, 678
AseI	ATTAAT	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	191, 1057
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	1057
BaeI	ACNNNNGTAYC	2 cut(s)	791, 824
BanII	GRGCYC	2 cut(s)	930, 1007
Bbv12I	GWGCWC	2 cut(s)	84, 96
BbvI	GCAGC	2 cut(s)	37, 240
BccI	CCATC	2 cut(s)	415, 434
BciT130I	CCWGG	3 cut(s)	86, 290, 1030
BciVI	GTATCC	2 cut(s)	745, 1060
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	4 cut(s)	449, 660, 675, 942
BfmI	CTRYAG	3 cut(s)	7, 154, 538
BfuI	GTATCC	2 cut(s)	745, 1060
BglI	GCCNNNNNGGC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	51, 229, 980
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	3 cut(s)	52, 230, 981
Bme1390I	CCNGG	4 cut(s)	86, 290, 1030, 1064
Bme18I	GGWCC	1 cut(s)	1057
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	191, 1057
BmiI	GGNNCC	2 cut(s)	445, 639
BmrFI	CCNGG	4 cut(s)	86, 290, 1030, 1064
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	227, 287, 980
BmuI	ACTGGG	1 cut(s)	564
BoxI	GACNNNNGTC	1 cut(s)	19
Bpu1102I	GCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	2 cut(s)	595, 788
BpuMI	CCSGG	1 cut(s)	1064
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 665, 865
Bse1I	ACTGG	3 cut(s)	322, 527, 559
Bse3DI	GCAATG	3 cut(s)	194, 591, 637
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	86, 290, 1030
BseGI	GGATG	2 cut(s)	242, 1005
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	134, 665, 865
BseMI	GCAATG	3 cut(s)	194, 591, 637
BseMII	CTCAG	5 cut(s)	9, 26, 187, 292, 805
BseNI	ACTGG	3 cut(s)	322, 527, 559
BseXI	GCAGC	2 cut(s)	37, 240
BseYI	CCCAGC	1 cut(s)	733
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	84, 96
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	309, 666, 1063
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	134, 665, 865
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	215, 348
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	4 cut(s)	84, 96, 930, 1007
Bsp143I	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
Bsp1720I	GCTNAGC	1 cut(s)	791
BspACI	CCGC	5 cut(s)	135, 459, 950, 979, 1060
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	5 cut(s)	10, 27, 186, 291, 804
BspHI	TCATGA	3 cut(s)	121, 703, 741
BspLI	GGNNCC	2 cut(s)	445, 639
BspMAI	CTGCAG	1 cut(s)	158
BspPI	GGATC	5 cut(s)	153, 372, 708, 900, 941
BsrDI	GCAATG	3 cut(s)	194, 591, 637
BsrI	ACTGG	3 cut(s)	322, 527, 559
BssMI	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
BssNI	GRCGYC	1 cut(s)	312
Bst2UI	CCWGG	3 cut(s)	86, 290, 1030
Bst4CI	ACNGT	2 cut(s)	129, 403
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	2 cut(s)	237, 246
BstC8I	GCNNGC	4 cut(s)	55, 302, 415, 788
BstDEI	CTNAG	5 cut(s)	18, 35, 173, 278, 791
BstF5I	GGATG	2 cut(s)	242, 1005
BstKTI	GATC	9 cut(s)	78, 161, 367, 454, 703, 709, 747, 908, 949
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
BstNI	CCWGG	3 cut(s)	86, 290, 1030
BstNSI	RCATGY	3 cut(s)	57, 185, 898
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	84, 288, 1028, 1062
BstSFI	CTRYAG	3 cut(s)	7, 154, 538
BstV1I	GCAGC	2 cut(s)	37, 240
BstX2I	RGATCY	3 cut(s)	158, 451, 905
BstYI	RGATCY	3 cut(s)	158, 451, 905
BsuI	GTATCC	2 cut(s)	745, 1060
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	242, 1005
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	4 cut(s)	151, 315, 474, 770
Cac8I	GCNNGC	4 cut(s)	55, 302, 415, 788
CciI	TCATGA	3 cut(s)	121, 703, 741
Cfr13I	GGNCC	2 cut(s)	191, 1057
CseI	GACGC	2 cut(s)	301, 590
CsiI	ACCWGGT	1 cut(s)	84
CviAII	CATG	9 cut(s)	54, 97, 122, 182, 368, 692, 704, 742, 895
DdeI	CTNAG	5 cut(s)	18, 35, 173, 278, 791
DpnI	GATC	9 cut(s)	77, 160, 366, 453, 702, 708, 746, 907, 948
DpnII	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco24I	GRGCYC	2 cut(s)	930, 1007
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	3 cut(s)	84, 288, 1028
EcoT38I	GRGCYC	2 cut(s)	930, 1007
FaeI	CATG	9 cut(s)	57, 100, 125, 185, 371, 695, 707, 745, 898
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	9 cut(s)	53, 96, 121, 181, 367, 691, 703, 741, 894
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	51, 229, 980
FokI	GGATG	2 cut(s)	249, 1012
FriOI	GRGCYC	2 cut(s)	930, 1007
Fsp4HI	GCNGC	3 cut(s)	51, 229, 980
FspBI	CTAG	4 cut(s)	449, 660, 675, 942
GluI	GCNGC	3 cut(s)	51, 229, 980
GsaI	CCCAGC	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	3 cut(s)	309, 666, 1063
HgaI	GACGC	2 cut(s)	301, 590
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	9 cut(s)	57, 100, 125, 185, 371, 695, 707, 745, 898
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	7 cut(s)	20, 138, 167, 559, 652, 713, 850
HpaII	CCGG	3 cut(s)	309, 666, 1063
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	3 cut(s)	28, 36, 1036
Hpy188III	TCNNGA	8 cut(s)	122, 353, 362, 566, 704, 710, 742, 854
Hpy8I	GTNNAC	1 cut(s)	916
Hpy99I	CGWCG	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	129, 403
HpyCH4IV	ACGT	1 cut(s)	510
HpyF3I	CTNAG	5 cut(s)	18, 35, 173, 278, 791
HpySE526I	ACGT	1 cut(s)	510
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	9 cut(s)	57, 100, 125, 185, 371, 695, 707, 745, 898
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
LmnI	GCTCC	2 cut(s)	91, 449
Lsp1109I	GCAGC	2 cut(s)	37, 240
LweI	GCATC	3 cut(s)	227, 287, 980
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	4 cut(s)	449, 660, 675, 942
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	5 cut(s)	313, 338, 353, 371, 529
MalI	GATC	9 cut(s)	77, 160, 366, 453, 702, 708, 746, 907, 948
MboI	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
MboII	GAAGA	3 cut(s)	108, 490, 661
MflI	RGATCY	3 cut(s)	158, 451, 905
MhlI	GDGCHC	4 cut(s)	84, 96, 930, 1007
MluCI	AATT	5 cut(s)	242, 324, 678, 723, 964
MlyI	GAGTC	2 cut(s)	29, 707
MmeI	TCCRAC	1 cut(s)	999
MnlI	CCTC	8 cut(s)	30, 115, 227, 377, 570, 588, 777, 859
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	899
MspI	CCGG	3 cut(s)	309, 666, 1063
MspR9I	CCNGG	4 cut(s)	86, 290, 1030, 1064
Mva1269I	GAATGC	2 cut(s)	215, 348
MvaI	CCWGG	3 cut(s)	86, 290, 1030
NciI	CCSGG	1 cut(s)	1064
NdeII	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
NlaIII	CATG	9 cut(s)	57, 100, 125, 185, 371, 695, 707, 745, 898
NlaIV	GGNNCC	2 cut(s)	445, 639
NmuCI	GTSAC	3 cut(s)	313, 353, 529
NspI	RCATGY	3 cut(s)	57, 185, 898
PaeI	GCATGC	1 cut(s)	57
PagI	TCATGA	3 cut(s)	121, 703, 741
PciI	ACATGT	1 cut(s)	181
PctI	GAATGC	2 cut(s)	215, 348
PfeI	GAWTC	5 cut(s)	138, 167, 559, 652, 850
PkrI	GCNGC	3 cut(s)	52, 230, 981
PleI	GAGTC	2 cut(s)	28, 707
PpsI	GAGTC	2 cut(s)	28, 707
PscI	ACATGT	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	84, 288, 1028
PspFI	CCCAGC	1 cut(s)	733
PspGI	CCWGG	3 cut(s)	84, 288, 1028
PspN4I	GGNNCC	2 cut(s)	445, 639
PspPI	GGNCC	2 cut(s)	191, 1057
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	3 cut(s)	158, 451, 905
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	51, 229, 980
Sau3AI	GATC	9 cut(s)	75, 158, 364, 451, 700, 706, 744, 905, 946
Sau96I	GGNCC	2 cut(s)	191, 1057
SchI	GAGTC	2 cut(s)	29, 707
ScrFI	CCNGG	4 cut(s)	86, 290, 1030, 1064
SduI	GDGCHC	4 cut(s)	84, 96, 930, 1007
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	3 cut(s)	227, 287, 980
SfcI	CTRYAG	3 cut(s)	7, 154, 538
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	2 cut(s)	574, 803
SmoI	CTYRAG	2 cut(s)	574, 803
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	5 cut(s)	242, 324, 678, 723, 964
SsiI	CCGC	5 cut(s)	135, 459, 950, 979, 1060
SspMI	CTAG	4 cut(s)	449, 660, 675, 942
StyD4I	CCNGG	4 cut(s)	84, 288, 1028, 1062
TaaI	ACNGT	2 cut(s)	129, 403
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	78, 655, 711
TasI	AATT	5 cut(s)	242, 324, 678, 723, 964
TauI	GCSGC	1 cut(s)	982
TfiI	GAWTC	5 cut(s)	138, 167, 559, 652, 850
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	4 cut(s)	158, 322, 481, 777
TseFI	GTSAC	3 cut(s)	313, 353, 529
TseI	GCWGC	2 cut(s)	50, 228
Tsp45I	GTSAC	3 cut(s)	313, 353, 529
TspDTI	ATGAA	5 cut(s)	138, 495, 561, 791, 899
TspRI	CASTG	4 cut(s)	158, 322, 481, 777
VpaK11BI	GGWCC	1 cut(s)	1057
VspI	ATTAAT	1 cut(s)	323
XapI	RAATTY	2 cut(s)	242, 678
XceI	RCATGY	3 cut(s)	57, 185, 898
XspI	CTAG	4 cut(s)	449, 660, 675, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.