Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Reverse (-)

18518335 .. 18519816

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1089900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGTATAAAGTTGAATCAACAGAAACTCTGAGGAACAAGTGTGCAGCATGCTATCGACAATTCAATAGAATCGAGCACTTAGTGGAGCACATGAGAACCTCATACCACTCAGCTCATGAACCCATGTGTGGAATTTGTAAGAAGCATTGCAAATATTTTGAATCTCTCAGGGAACATCTTATAGGGCCATTGCCAAAACAAGAATGCAGAAATATATTCAGCACCAGAGGATGCAAAATCTGCTTAGCCATCCTCGAAAGCCCGTATGCTCTTAGGGTTCACCAGGACAGATGCCAACTCTCTGGCGGCAATGCTGGATTACTTGGTCGCTTTGCTAATCTGGGCATTCGTGACAATACTGAAAGTGGTAGCACAGGAGGCACTCAAGTTGTTGCACTTGCTTGCAAAATGGTTGGTGGTGGCAGCGATGGCTCACTGGATCTCTGCGCAAAGGTCTGCCTCACTGATGAATATGACAACATCATCTTTCAGTCTTATGTCATGCCACTGATTCCAGTCACAAACTATAGATATGAAACAACTGGTATTCGCCCTGAATACTTGAGGGATGCAATCCCTTTGAGGCAAGTGCAAAAGAAGATCCAAGACTTCCTCTGCAATGGGGAACCAAAGTGGAAGATTCGACTCCGAAGTGGAAGAGCTAGGATTCTTGTGGGTCACGGTTTGGATCATGACCTTGACTCTCTGCAGGTTGAATATCCACAAGTAATGATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

248

Amino Acids

28.03

Weight (kDa)

8.65

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	703
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	3 cut(s)	450, 598, 699
AcsI	RAATTY	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	17, 67, 164, 719
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	116, 665
AluI	AGCT	2 cut(s)	116, 665
Alw21I	GWGCWC	2 cut(s)	81, 93
AlwI	GGATC	3 cut(s)	450, 598, 699
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	47, 426
ApoI	RAATTY	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	81, 93
BbvI	GCAGC	2 cut(s)	59, 438
BccI	CCATC	2 cut(s)	260, 425
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	2 cut(s)	529, 710
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	3 cut(s)	48, 310, 427
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	3 cut(s)	49, 311, 428
Bme1390I	CCNGG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	3 cut(s)	224, 284, 562
Bpu1102I	GCTNAGC	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	372, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	444, 518, 550
Bse3DI	GCAATG	4 cut(s)	148, 191, 319, 628
BseBI	CCWGG	1 cut(s)	287
BseGI	GGATG	3 cut(s)	239, 252, 577
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	4 cut(s)	148, 191, 319, 628
BseMII	CTCAG	3 cut(s)	23, 126, 184
BseNI	ACTGG	3 cut(s)	444, 518, 550
BseXI	GCAGC	2 cut(s)	59, 438
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	81, 93
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmI	GAATGC	2 cut(s)	212, 348
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	81, 93
Bsp143I	GATC	3 cut(s)	442, 603, 691
Bsp1720I	GCTNAGC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	24, 125, 183
BspHI	TCATGA	2 cut(s)	118, 694
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	714
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	3 cut(s)	450, 598, 699
BspQI	GCTCTTC	1 cut(s)	655
BsrDI	GCAATG	4 cut(s)	148, 191, 319, 628
BsrI	ACTGG	3 cut(s)	444, 518, 550
BssMI	GATC	3 cut(s)	442, 603, 691
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	52, 406
BstDEI	CTNAG	6 cut(s)	32, 82, 112, 170, 247, 275
BstF5I	GGATG	3 cut(s)	239, 252, 577
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	3 cut(s)	445, 606, 694
BstMBI	GATC	3 cut(s)	442, 603, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 381, 432
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	529, 710
BstV1I	GCAGC	2 cut(s)	59, 438
BstX2I	RGATCY	2 cut(s)	442, 603
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	442, 603
BsuRI	GGCC	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	239, 252, 577
BtsIMutI	CAGTG	3 cut(s)	437, 465, 509
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	52, 406
CciI	TCATGA	2 cut(s)	118, 694
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	188
CviAII	CATG	6 cut(s)	51, 94, 119, 127, 505, 695
CviJI	RGCY	6 cut(s)	116, 190, 251, 264, 435, 665
CviKI_1	RGCY	6 cut(s)	116, 190, 251, 264, 435, 665
DdeI	CTNAG	6 cut(s)	32, 82, 112, 170, 247, 275
DpnI	GATC	3 cut(s)	444, 605, 693
DpnII	GATC	3 cut(s)	442, 603, 691
DraIII	CACNNNGTG	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	6 cut(s)	54, 97, 122, 130, 508, 698
FatI	CATG	6 cut(s)	50, 93, 118, 126, 504, 694
Fnu4HI	GCNGC	3 cut(s)	48, 310, 427
FokI	GGATG	3 cut(s)	239, 246, 584
Fsp4HI	GCNGC	3 cut(s)	48, 310, 427
FspBI	CTAG	1 cut(s)	666
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	3 cut(s)	48, 310, 427
HaeIII	GGCC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	6 cut(s)	54, 97, 122, 130, 508, 698
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	8 cut(s)	17, 72, 164, 514, 643, 648, 670, 704
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	33, 653
Hpy188III	TCNNGA	3 cut(s)	119, 353, 695
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 381, 432
HpyF3I	CTNAG	6 cut(s)	32, 82, 112, 170, 247, 275
Hsp92II	CATG	6 cut(s)	54, 97, 122, 130, 508, 698
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	442, 603, 691
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	59, 438
LweI	GCATC	3 cut(s)	224, 284, 562
MaeI	CTAG	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	353, 520, 680
MalI	GATC	3 cut(s)	444, 605, 693
MboI	GATC	3 cut(s)	442, 603, 691
MboII	GAAGA	3 cut(s)	613, 652, 672
MflI	RGATCY	2 cut(s)	442, 603
MhlI	GDGCHC	2 cut(s)	81, 93
MluCI	AATT	2 cut(s)	62, 135
MlyI	GAGTC	2 cut(s)	642, 698
MnlI	CCTC	9 cut(s)	27, 112, 224, 266, 374, 473, 561, 579, 626
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	2 cut(s)	212, 348
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	243, 381, 432
NdeII	GATC	3 cut(s)	442, 603, 691
NlaIII	CATG	6 cut(s)	54, 97, 122, 130, 508, 698
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	3 cut(s)	353, 520, 680
NsbI	TGCGCA	1 cut(s)	451
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	2 cut(s)	118, 694
PciSI	GCTCTTC	1 cut(s)	655
PctI	GAATGC	2 cut(s)	212, 348
PfeI	GAWTC	6 cut(s)	17, 72, 164, 514, 643, 670
PkrI	GCNGC	3 cut(s)	49, 311, 428
PleI	GAGTC	2 cut(s)	642, 698
PpsI	GAGTC	2 cut(s)	642, 698
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	714
PsuI	RGATCY	2 cut(s)	442, 603
SapI	GCTCTTC	1 cut(s)	655
SatI	GCNGC	3 cut(s)	48, 310, 427
Sau3AI	GATC	3 cut(s)	442, 603, 691
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	642, 698
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	81, 93
SetI	ASST	7 cut(s)	104, 118, 459, 667, 702, 717, 743
SfaNI	GCATC	3 cut(s)	224, 284, 562
SfcI	CTRYAG	2 cut(s)	529, 710
SmlI	CTYRAG	2 cut(s)	387, 565
SmoI	CTYRAG	2 cut(s)	387, 565
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	2 cut(s)	62, 135
SsiI	CCGC	1 cut(s)	309
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	4 cut(s)	58, 75, 258, 646
TasI	AATT	2 cut(s)	62, 135
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	6 cut(s)	17, 72, 164, 514, 643, 670
TscAI	CASTG	3 cut(s)	444, 472, 516
TseFI	GTSAC	3 cut(s)	353, 520, 680
TseI	GCWGC	2 cut(s)	47, 426
Tsp45I	GTSAC	3 cut(s)	353, 520, 680
TspDTI	ATGAA	3 cut(s)	135, 486, 552
TspRI	CASTG	3 cut(s)	444, 472, 516
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.