Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Reverse (-)

25808350 .. 25810526

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G285000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACTACAGAGTTGAGTCTTCAGAAACTCTGAGGAACAAGTGTGCGGCATGCTACAGACAATTCAACAAAATCGAGCACTTAGTGGAGCACATGAGAACCTCATATCACTCAGCTCATGAACCCACATGTGGAATCTGTAAGAAACATTGCAGATCCTTTGAATCTCTCAGGGAACATCTTATAGGGCCATTGCCAAAACAAGAATGCAGGAATATATTCAGCACCAGAGGATGCAAATTCTGCTTAGCTATCCTTGACAGCCCTTATGCTCTCAGGGTTCACCAGGACAGATGCCAACTCTCTGGTGTAAATGCTGGCCTACTTGGTCGCTTTGCTAATTTGGGCATTCGTGACAATACTGAAAATGGTAGCACAAGAGGCACCCAAGTTGTTGCACTTGCTTGCAAAATGGTTGGTGGGGGCAGTGACGGCTCCCTGGATCTCTGTGCAAAGGTCTGCCTCATCGACGAATACGAAAACATCATCTTCCAGTCTTATGTCAAGCCACTACTTCCAGTCACAAACTATAGGTATGAAACAACTGGCATTCGTCCTGAATACTTAAGGGATGCAATGCCTCTGAGGCAAGTGCAAAAGAAGATTCAAGACTTCCTCTGCAATGGGGAACCAATGTGGAAGATTCGACCTAGAGGCGGAAAAGCTAGGATTCTTGTGGGCCATGGTTTGGATCATGATCTTGACTCTTTGCAGGTGGAATATCCACAAGTAATGATCAGGGATACTGCAAAATACCCTCCATTGATGAAAACAAGCAAGCTCAGCAACTCACTCAAGTATCTAACACAAGCATATCTTGGGTATGACATTCAAACTGGCATTCAAGACCCTTATGAGGATTGTGTTGCAACAATGAAGCTCTACATGAGAATGCGATCCCAAGTTCACAAGACAGAGGCTTACCCACTAGCTTCTGACCCACAGAACAGGAACAACTTTGCATCGTGGCGCCAAAATGAGCTCGAGAGGATGAACCCAGAACAAATGCTGGAAGCCTCAAGGTCTGATTACTATTGTTGGTGTCTGGACTCCAGGGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

355

Amino Acids

40.71

Weight (kDa)

8.5

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
AccB1I	GGYRCC	2 cut(s)	383, 969
AccB7I	CCANNNNNTGG	1 cut(s)	688
AciI	CCGC	2 cut(s)	47, 657
AclWI	GGATC	4 cut(s)	150, 450, 699, 891
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	970
AdeI	CACNNNGTG	1 cut(s)	85
AfiI	CCNNNNNNNGG	4 cut(s)	131, 656, 688, 856
AflII	CTTAAG	1 cut(s)	565
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	67, 164, 608, 833, 845
AjnI	CCWGG	3 cut(s)	285, 438, 1052
AluBI	AGCT	7 cut(s)	116, 251, 665, 781, 880, 932, 982
AluI	AGCT	7 cut(s)	116, 251, 665, 781, 880, 932, 982
Alw21I	GWGCWC	3 cut(s)	81, 93, 984
AlwI	GGATC	4 cut(s)	150, 450, 699, 891
Ama87I	CYCGRG	1 cut(s)	983
AoxI	GGCC	3 cut(s)	188, 319, 679
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	188, 679
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	983
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BanI	GGYRCC	2 cut(s)	383, 969
BanII	GRGCYC	1 cut(s)	984
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	3 cut(s)	81, 93, 984
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	3 cut(s)	287, 440, 1054
BciVI	GTATCC	1 cut(s)	736
BclI	TGATCA	1 cut(s)	735
BfaI	CTAG	3 cut(s)	651, 666, 929
BfmI	CTRYAG	3 cut(s)	7, 55, 529
BfoI	RGCGCY	1 cut(s)	973
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	736
BglI	GCCNNNNNGGC	1 cut(s)	586
BisI	GCNGC	1 cut(s)	48
BlpI	GCTNAGC	2 cut(s)	247, 782
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	287, 440, 1054
BmeT110I	CYCGRG	1 cut(s)	983
BmgT120I	GGNCC	2 cut(s)	188, 679
BmiI	GGNNCC	4 cut(s)	385, 436, 630, 971
BmrFI	CCNGG	3 cut(s)	287, 440, 1054
BmsI	GCATC	4 cut(s)	224, 284, 562, 971
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	1036
Bpu1102I	GCTNAGC	2 cut(s)	247, 782
BpuEI	CTTGAG	2 cut(s)	779, 1003
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	438, 682, 1053
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 656, 688, 856
Bse1I	ACTGG	4 cut(s)	493, 518, 550, 841
Bse3DI	GCAATG	4 cut(s)	148, 191, 582, 628
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	3 cut(s)	287, 440, 1054
BseDI	CCNNGG	3 cut(s)	438, 682, 1053
BseGI	GGATG	3 cut(s)	239, 577, 996
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	131, 656, 688, 856
BseMI	GCAATG	4 cut(s)	148, 191, 582, 628
BseMII	CTCAG	6 cut(s)	23, 126, 184, 289, 575, 796
BseNI	ACTGG	4 cut(s)	493, 518, 550, 841
BshFI	GGCC	3 cut(s)	190, 321, 681
BshNI	GGYRCC	2 cut(s)	383, 969
BsiHKAI	GWGCWC	3 cut(s)	81, 93, 984
BsiHKCI	CYCGRG	1 cut(s)	983
BslI	CCNNNNNNNGG	4 cut(s)	131, 656, 688, 856
BsmI	GAATGC	5 cut(s)	212, 348, 549, 840, 897
BsnI	GGCC	3 cut(s)	190, 321, 681
BsoBI	CYCGRG	1 cut(s)	983
Bsp1286I	GDGCHC	3 cut(s)	81, 93, 984
Bsp143I	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
Bsp1720I	GCTNAGC	2 cut(s)	247, 782
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	2 cut(s)	47, 657
BspANI	GGCC	3 cut(s)	190, 321, 681
BspCNI	CTCAG	6 cut(s)	24, 125, 183, 288, 576, 795
BspHI	TCATGA	2 cut(s)	118, 694
BspLI	GGNNCC	4 cut(s)	385, 436, 630, 971
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	4 cut(s)	150, 450, 699, 891
BspT107I	GGYRCC	2 cut(s)	383, 969
BspTI	CTTAAG	1 cut(s)	565
BsrDI	GCAATG	4 cut(s)	148, 191, 582, 628
BsrI	ACTGG	4 cut(s)	493, 518, 550, 841
BssECI	CCNNGG	3 cut(s)	438, 682, 1053
BssMI	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
BssNI	GRCGYC	1 cut(s)	970
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	3 cut(s)	287, 440, 1054
BstACI	GRCGYC	1 cut(s)	970
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	4 cut(s)	52, 319, 406, 779
BstDEI	CTNAG	8 cut(s)	32, 82, 112, 170, 247, 275, 584, 782
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	239, 577, 996
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	6 cut(s)	158, 445, 694, 700, 738, 899
BstMBI	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
BstNI	CCWGG	3 cut(s)	287, 440, 1054
BstNSI	RCATGY	2 cut(s)	54, 132
BstSCI	CCNGG	3 cut(s)	285, 438, 1052
BstSFI	CTRYAG	3 cut(s)	7, 55, 529
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	155, 442
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	155, 442
BsuI	GTATCC	1 cut(s)	736
BsuRI	GGCC	3 cut(s)	190, 321, 681
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	3 cut(s)	239, 577, 996
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	4 cut(s)	52, 319, 406, 779
CciI	TCATGA	2 cut(s)	118, 694
CfoI	GCGC	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	188, 679
CviAII	CATG	7 cut(s)	51, 94, 119, 129, 683, 695, 886
DdeI	CTNAG	8 cut(s)	32, 82, 112, 170, 247, 275, 584, 782
DinI	GGCGCC	1 cut(s)	971
DpnI	GATC	6 cut(s)	157, 444, 693, 699, 737, 898
DpnII	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
DraIII	CACNNNGTG	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	672
Ecl136II	GAGCTC	1 cut(s)	982
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	984
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	982
EcoRII	CCWGG	3 cut(s)	285, 438, 1052
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	984
EgeI	GGCGCC	1 cut(s)	971
EheI	GGCGCC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	7 cut(s)	54, 97, 122, 132, 686, 698, 889
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FatI	CATG	7 cut(s)	50, 93, 118, 128, 682, 694, 885
FbaI	TGATCA	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	246, 584, 1003
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	3 cut(s)	651, 666, 929
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	1036
HaeII	RGCGCY	1 cut(s)	973
HaeIII	GGCC	3 cut(s)	190, 321, 681
HhaI	GCGC	1 cut(s)	972
Hin1I	GRCGYC	1 cut(s)	970
Hin1II	CATG	7 cut(s)	54, 97, 122, 132, 686, 698, 889
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	8 cut(s)	17, 135, 164, 604, 643, 670, 704, 1049
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	283, 907
Hpy188I	TCNGA	5 cut(s)	25, 33, 585, 937, 1027
Hpy188III	TCNNGA	9 cut(s)	119, 353, 557, 608, 695, 701, 845, 985, 1046
Hpy8I	GTNNAC	2 cut(s)	283, 907
Hpy99I	CGWCG	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
HpyF3I	CTNAG	8 cut(s)	32, 82, 112, 170, 247, 275, 584, 782
Hsp92I	GRCGYC	1 cut(s)	970
Hsp92II	CATG	7 cut(s)	54, 97, 122, 132, 686, 698, 889
HspAI	GCGC	1 cut(s)	970
KasI	GGCGCC	1 cut(s)	969
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
LmnI	GCTCC	2 cut(s)	88, 440
LweI	GCATC	4 cut(s)	224, 284, 562, 971
MaeI	CTAG	3 cut(s)	651, 666, 929
MaeIII	GTNAC	3 cut(s)	353, 428, 520
MalI	GATC	6 cut(s)	157, 444, 693, 699, 737, 898
MboI	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
MboII	GAAGA	4 cut(s)	12, 481, 613, 652
MflI	RGATCY	2 cut(s)	155, 442
MhlI	GDGCHC	3 cut(s)	81, 93, 984
MluCI	AATT	3 cut(s)	62, 239, 340
Mly113I	GGCGCC	1 cut(s)	970
MlyI	GAGTC	3 cut(s)	26, 698, 1043
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	890
MspCI	CTTAAG	1 cut(s)	565
MspR9I	CCNGG	3 cut(s)	287, 440, 1054
Mva1269I	GAATGC	5 cut(s)	212, 348, 549, 840, 897
MvaI	CCWGG	3 cut(s)	287, 440, 1054
MwoI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
NarI	GGCGCC	1 cut(s)	970
NcoI	CCATGG	1 cut(s)	682
NdeII	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
NlaIII	CATG	7 cut(s)	54, 97, 122, 132, 686, 698, 889
NlaIV	GGNNCC	4 cut(s)	385, 436, 630, 971
NmuCI	GTSAC	3 cut(s)	353, 428, 520
NspI	RCATGY	2 cut(s)	54, 132
PaeI	GCATGC	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	983
PagI	TCATGA	2 cut(s)	118, 694
PaqCI	CACCTGC	1 cut(s)	703
PciI	ACATGT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	5 cut(s)	212, 348, 549, 840, 897
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	5 cut(s)	135, 164, 604, 643, 670
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	3 cut(s)	25, 698, 1043
PluTI	GGCGCC	1 cut(s)	973
PpsI	GAGTC	3 cut(s)	25, 698, 1043
PscI	ACATGT	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	984
Psp6I	CCWGG	3 cut(s)	285, 438, 1052
PspGI	CCWGG	3 cut(s)	285, 438, 1052
PspN4I	GGNNCC	4 cut(s)	385, 436, 630, 971
PspPI	GGNCC	2 cut(s)	188, 679
PsuI	RGATCY	2 cut(s)	155, 442
RseI	CAYNNNNRTG	1 cut(s)	890
SacI	GAGCTC	1 cut(s)	984
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	6 cut(s)	155, 442, 691, 697, 735, 896
Sau96I	GGNCC	2 cut(s)	188, 679
SchI	GAGTC	3 cut(s)	26, 698, 1043
ScrFI	CCNGG	3 cut(s)	287, 440, 1054
SduI	GDGCHC	3 cut(s)	81, 93, 984
SfaNI	GCATC	4 cut(s)	224, 284, 562, 971
SfcI	CTRYAG	3 cut(s)	7, 55, 529
SfoI	GGCGCC	1 cut(s)	971
Sfr274I	CTCGAG	1 cut(s)	983
SlaI	CTCGAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	4 cut(s)	565, 794, 983, 1018
SmoI	CTYRAG	4 cut(s)	565, 794, 983, 1018
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	62, 239, 340
SsiI	CCGC	2 cut(s)	47, 657
SspDI	GGCGCC	1 cut(s)	969
SspMI	CTAG	3 cut(s)	651, 666, 929
SstI	GAGCTC	1 cut(s)	984
StyD4I	CCNGG	3 cut(s)	285, 438, 1052
StyI	CCWWGG	1 cut(s)	682
TaqI	TCGA	4 cut(s)	75, 468, 646, 984
TasI	AATT	3 cut(s)	62, 239, 340
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	135, 164, 604, 643, 670
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	3 cut(s)	353, 428, 520
Tsp45I	GTSAC	3 cut(s)	353, 428, 520
TspDTI	ATGAA	5 cut(s)	135, 552, 782, 890, 1007
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	565
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	2 cut(s)	54, 132
XhoI	CTCGAG	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	3 cut(s)	651, 666, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.