Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011689

Physical Location & Seq

Genomic Coordinates Forward (+)

44324109 .. 44326699

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1186700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGTCTAGAGTCGAATCATCAGAAACTCTGAGGAACAAGTGTGCAGCATGCTATCGACAGTTCAATCGGATCGAGCACTTAGTGGAGCACATGAGAACCTCATACCACTCATCTCATGAACCCATGTGTGGAATTTGTAAGAAGCATTGCAGATCTTTTGAATCTCTCAGAGAACATCTTATAGGGCCACTGCCAAAACAAGAGTGCAGAAACATATTCATCACTAGAGGATGCAAAATCTGCTTAGCCATCCTCGAAAGCCCGTATGCTCTTAGGGTTCACCAGGACAGATGCCAACTCTCTGGTGGAAATGCTGGATTACTTGGTCGCTTTGCTAATCTGGGCATTCGTGACAATACTGAAGGTGGTAGCACAAGAGGCACTCAAGTTGTTGCACTGGCTTGCAAAATGGTTGGTGGAGGCAGCGATGGCTCCCTGGATCTCTGCGCAAAGGTCTGCCTCACTGATGAATATGACAACATCATCTTCCAGTCTTATGTCAAGCCACTGCTTCCAGTCACAAACTATAGGTATGAAACAACTGGTATTCGTCCTGAATACTTGAGGGATGCAATGCCTTTGAGGCAAGTGCAAAAGAAGATTCAAGATTTCCTCTGCAATGGGGAACCGATGTGGAAGATTCGACCCCGAGGTGGAAAAGCTAGGATTCTTGTGGGCCACGGTTTAGATCATGACCTTGACTCCTTGCAGTTTGAATACCCACAAGTAATGATTAGGGATACTGCAAAATACCCTCCATTGATGAAAACAAGCAAGCTCAGCAACTCACTCAAGTATCTCACACAAGCATATCTTGGGTATGAAATTCAAACAGGCATTCAAGATCCTTATGAGGATTGTGTTGCAACAATGAAGCTCTACATGAGAATGAGATCCCAAGTTCACAAAGTAGAGGCATACCCACTCGCTTCTGACCCGCAAAACCGGAATAACTTCGCGGCGTGGCGCCAAAATGAGCTTGAGAGGATGAGCCCAGATCAAATGCTGGAAATCTCAAGGTCTGATTACTACTGCTGGTGCCTGGACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

352

Amino Acids

40.25

Weight (kDa)

8.51

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	150 - 295	6.4e-06	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27970 AT5G40310 AT5G40310
fragaria_vesca	FvH4_6g50710
malus_domestica	MD00G1089900.v1.1 MD00G1186700.v1.1
prunus_persica	Prupe.3G285000_v2.0.a1 Prupe.3G285000_v2.0.a1
pyrus_communis	pycom11g21450
rosa_chinensis	RchiOBHm_Chr2g0171511
rosa_laevigata	RLG00000022021
rosa_roxburghii	Rroxscaffold_2G00080580
rosa_rugosa	Rorug02G0554800
rosa_samantha	Rh2AG629200 Rh2BG639800 Rh2CG608300 Rh2DG650600 Rh2DG656300
rosa_wichuraiana	Rw2G052120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	451
AccB1I	GGYRCC	2 cut(s)	969, 1041
AccII	CGCG	1 cut(s)	962
AciI	CCGC	2 cut(s)	941, 962
AclWI	GGATC	4 cut(s)	80, 450, 842, 891
AcsI	RAATTY	2 cut(s)	135, 828
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	970
AdeI	CACNNNGTG	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	131, 656
AgsI	TTSAA	6 cut(s)	67, 164, 608, 719, 833, 845
AjnI	CCWGG	3 cut(s)	285, 438, 1044
AluBI	AGCT	4 cut(s)	665, 781, 880, 982
AluI	AGCT	4 cut(s)	665, 781, 880, 982
Alw21I	GWGCWC	2 cut(s)	81, 93
AlwI	GGATC	4 cut(s)	80, 450, 842, 891
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	2 cut(s)	188, 679
ApeKI	GCWGC	2 cut(s)	47, 426
ApoI	RAATTY	2 cut(s)	135, 828
Asp700I	GAANNNNTTC	1 cut(s)	956
AspLEI	GCGC	2 cut(s)	452, 972
AspS9I	GGNCC	2 cut(s)	188, 679
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	651
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BanI	GGYRCC	2 cut(s)	969, 1041
BanII	GRGCYC	1 cut(s)	998
Bbv12I	GWGCWC	2 cut(s)	81, 93
BbvI	GCAGC	2 cut(s)	59, 438
BccI	CCATC	2 cut(s)	260, 425
BciT130I	CCWGG	3 cut(s)	287, 440, 1046
BciVI	GTATCC	1 cut(s)	736
BfaI	CTAG	3 cut(s)	9, 228, 666
BfmI	CTRYAG	1 cut(s)	529
BfoI	RGCGCY	1 cut(s)	973
BfuI	GTATCC	1 cut(s)	736
BglI	GCCNNNNNGGC	1 cut(s)	586
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	3 cut(s)	48, 427, 963
BlpI	GCTNAGC	2 cut(s)	247, 782
BlsI	GCNGC	3 cut(s)	49, 428, 964
Bme1390I	CCNGG	3 cut(s)	287, 440, 1046
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	2 cut(s)	188, 679
BmiI	GGNNCC	4 cut(s)	436, 630, 971, 1043
BmrFI	CCNGG	3 cut(s)	287, 440, 1046
BmsI	GCATC	3 cut(s)	224, 284, 562
Bpu1102I	GCTNAGC	2 cut(s)	247, 782
BpuEI	CTTGAG	5 cut(s)	372, 586, 779, 1003, 1004
BsaHI	GRCGYC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	438, 652, 682
BsaWI	WCCGGW	1 cut(s)	948
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 656
Bse1I	ACTGG	4 cut(s)	405, 493, 518, 550
Bse3DI	GCAATG	3 cut(s)	148, 582, 628
BseBI	CCWGG	3 cut(s)	287, 440, 1046
BseDI	CCNNGG	3 cut(s)	438, 652, 682
BseGI	GGATG	4 cut(s)	239, 252, 577, 996
BseLI	CCNNNNNNNGG	2 cut(s)	131, 656
BseMI	GCAATG	3 cut(s)	148, 582, 628
BseMII	CTCAG	3 cut(s)	23, 184, 796
BseNI	ACTGG	4 cut(s)	405, 493, 518, 550
BseXI	GCAGC	2 cut(s)	59, 438
BsgI	GTGCAG	2 cut(s)	66, 229
Bsh1236I	CGCG	1 cut(s)	962
BshFI	GGCC	2 cut(s)	190, 681
BshNI	GGYRCC	2 cut(s)	969, 1041
BsiHKAI	GWGCWC	2 cut(s)	81, 93
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	949
BslI	CCNNNNNNNGG	2 cut(s)	131, 656
BsmI	GAATGC	2 cut(s)	348, 840
BsnI	GGCC	2 cut(s)	190, 681
BsoBI	CYCGRG	1 cut(s)	651
Bsp1286I	GDGCHC	3 cut(s)	81, 93, 998
Bsp143I	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
Bsp1720I	GCTNAGC	2 cut(s)	247, 782
BspACI	CCGC	2 cut(s)	941, 962
BspANI	GGCC	2 cut(s)	190, 681
BspCNI	CTCAG	3 cut(s)	24, 183, 795
BspFNI	CGCG	1 cut(s)	962
BspHI	TCATGA	2 cut(s)	118, 694
BspLI	GGNNCC	4 cut(s)	436, 630, 971, 1043
BspPI	GGATC	4 cut(s)	80, 450, 842, 891
BspT107I	GGYRCC	2 cut(s)	969, 1041
BsrDI	GCAATG	3 cut(s)	148, 582, 628
BsrI	ACTGG	4 cut(s)	405, 493, 518, 550
BssECI	CCNNGG	3 cut(s)	438, 652, 682
BssMI	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
BssNI	GRCGYC	1 cut(s)	970
Bst2UI	CCWGG	3 cut(s)	287, 440, 1046
Bst4CI	ACNGT	2 cut(s)	63, 686
BstACI	GRCGYC	1 cut(s)	970
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	52, 406, 779
BstDEI	CTNAG	7 cut(s)	32, 82, 170, 247, 275, 782, 1053
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	4 cut(s)	239, 252, 577, 996
BstFNI	CGCG	1 cut(s)	962
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	2 cut(s)	452, 972
BstKTI	GATC	7 cut(s)	75, 158, 445, 694, 850, 899, 1003
BstMBI	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
BstNI	CCWGG	3 cut(s)	287, 440, 1046
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	285, 438, 1044
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	1 cut(s)	962
BstV1I	GCAGC	2 cut(s)	59, 438
BstX2I	RGATCY	4 cut(s)	155, 442, 847, 896
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	4 cut(s)	155, 442, 847, 896
BsuI	GTATCC	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	190, 681
BtgI	CCRYGG	1 cut(s)	682
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	4 cut(s)	239, 252, 577, 996
BtsI	GCAGTG	2 cut(s)	191, 509
BtsIMutI	CAGTG	4 cut(s)	191, 398, 465, 509
Cac8I	GCNNGC	3 cut(s)	52, 406, 779
CciI	TCATGA	2 cut(s)	118, 694
CfoI	GCGC	2 cut(s)	452, 972
Cfr13I	GGNCC	2 cut(s)	188, 679
CviAII	CATG	6 cut(s)	51, 94, 119, 127, 695, 886
DdeI	CTNAG	7 cut(s)	32, 82, 170, 247, 275, 782, 1053
DinI	GGCGCC	1 cut(s)	971
DpnI	GATC	7 cut(s)	74, 157, 444, 693, 849, 898, 1002
DpnII	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
DraIII	CACNNNGTG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	651
EcoRII	CCWGG	3 cut(s)	285, 438, 1044
EcoT38I	GRGCYC	1 cut(s)	998
EgeI	GGCGCC	1 cut(s)	971
EheI	GGCGCC	1 cut(s)	971
FaeI	CATG	6 cut(s)	54, 97, 122, 130, 698, 889
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FatI	CATG	6 cut(s)	50, 93, 118, 126, 694, 885
FauI	CCCGC	1 cut(s)	948
Fnu4HI	GCNGC	3 cut(s)	48, 427, 963
FokI	GGATG	4 cut(s)	239, 246, 584, 1003
FriOI	GRGCYC	1 cut(s)	998
Fsp4HI	GCNGC	3 cut(s)	48, 427, 963
FspBI	CTAG	3 cut(s)	9, 228, 666
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	2 cut(s)	451, 971
GluI	GCNGC	3 cut(s)	48, 427, 963
HaeII	RGCGCY	1 cut(s)	973
HaeIII	GGCC	2 cut(s)	190, 681
HapII	CCGG	1 cut(s)	949
HhaI	GCGC	2 cut(s)	452, 972
Hin1I	GRCGYC	1 cut(s)	970
Hin1II	CATG	6 cut(s)	54, 97, 122, 130, 698, 889
Hin6I	GCGC	2 cut(s)	450, 970
HinP1I	GCGC	2 cut(s)	450, 970
HinfI	GANTC	9 cut(s)	5, 12, 17, 164, 604, 643, 670, 704, 1049
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	283, 907
Hpy188I	TCNGA	6 cut(s)	25, 33, 72, 173, 937, 1027
Hpy188III	TCNNGA	7 cut(s)	9, 119, 353, 557, 608, 695, 845
Hpy8I	GTNNAC	2 cut(s)	283, 907
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	63, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
HpyF3I	CTNAG	7 cut(s)	32, 82, 170, 247, 275, 782, 1053
Hsp92I	GRCGYC	1 cut(s)	970
Hsp92II	CATG	6 cut(s)	54, 97, 122, 130, 698, 889
HspAI	GCGC	2 cut(s)	450, 970
KasI	GGCGCC	1 cut(s)	969
Kzo9I	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
LmnI	GCTCC	2 cut(s)	88, 440
Lsp1109I	GCAGC	2 cut(s)	59, 438
LweI	GCATC	3 cut(s)	224, 284, 562
MaeI	CTAG	3 cut(s)	9, 228, 666
MaeIII	GTNAC	2 cut(s)	353, 520
MalI	GATC	7 cut(s)	74, 157, 444, 693, 849, 898, 1002
MboI	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
MboII	GAAGA	3 cut(s)	481, 613, 652
MflI	RGATCY	4 cut(s)	155, 442, 847, 896
MhlI	GDGCHC	3 cut(s)	81, 93, 998
MluCI	AATT	2 cut(s)	135, 828
Mly113I	GGCGCC	1 cut(s)	970
MlyI	GAGTC	4 cut(s)	14, 21, 698, 1043
MroXI	GAANNNNTTC	1 cut(s)	956
MslI	CAYNNNNRTG	1 cut(s)	890
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	3 cut(s)	287, 440, 1046
Mva1269I	GAATGC	2 cut(s)	348, 840
MvaI	CCWGG	3 cut(s)	287, 440, 1046
MvnI	CGCG	1 cut(s)	962
MwoI	GCNNNNNNNGC	5 cut(s)	243, 381, 432, 586, 783
NarI	GGCGCC	1 cut(s)	970
NdeII	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
NlaIII	CATG	6 cut(s)	54, 97, 122, 130, 698, 889
NlaIV	GGNNCC	4 cut(s)	436, 630, 971, 1043
NmuCI	GTSAC	2 cut(s)	353, 520
NsbI	TGCGCA	1 cut(s)	451
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	2 cut(s)	118, 694
PctI	GAATGC	2 cut(s)	348, 840
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	5 cut(s)	17, 164, 604, 643, 670
PkrI	GCNGC	3 cut(s)	49, 428, 964
PleI	GAGTC	4 cut(s)	13, 20, 698, 1043
PluTI	GGCGCC	1 cut(s)	973
PpsI	GAGTC	4 cut(s)	13, 20, 698, 1043
Psp6I	CCWGG	3 cut(s)	285, 438, 1044
PspGI	CCWGG	3 cut(s)	285, 438, 1044
PspN4I	GGNNCC	4 cut(s)	436, 630, 971, 1043
PspPI	GGNCC	2 cut(s)	188, 679
PsuI	RGATCY	4 cut(s)	155, 442, 847, 896
RseI	CAYNNNNRTG	1 cut(s)	890
SatI	GCNGC	3 cut(s)	48, 427, 963
Sau3AI	GATC	7 cut(s)	72, 155, 442, 691, 847, 896, 1000
Sau96I	GGNCC	2 cut(s)	188, 679
SchI	GAGTC	4 cut(s)	14, 21, 698, 1043
ScrFI	CCNGG	3 cut(s)	287, 440, 1046
SduI	GDGCHC	3 cut(s)	81, 93, 998
SfaNI	GCATC	3 cut(s)	224, 284, 562
SfcI	CTRYAG	1 cut(s)	529
SfoI	GGCGCC	1 cut(s)	971
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	5 cut(s)	387, 565, 794, 983, 1018
SmoI	CTYRAG	5 cut(s)	387, 565, 794, 983, 1018
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	2 cut(s)	135, 828
SsiI	CCGC	2 cut(s)	941, 962
SspDI	GGCGCC	1 cut(s)	969
SspMI	CTAG	3 cut(s)	9, 228, 666
StyD4I	CCNGG	3 cut(s)	285, 438, 1044
TaaI	ACNGT	2 cut(s)	63, 686
TaqI	TCGA	5 cut(s)	15, 58, 75, 258, 646
TasI	AATT	2 cut(s)	135, 828
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	5 cut(s)	17, 164, 604, 643, 670
TscAI	CASTG	4 cut(s)	198, 405, 472, 516
TseFI	GTSAC	2 cut(s)	353, 520
TseI	GCWGC	2 cut(s)	47, 426
Tsp45I	GTSAC	2 cut(s)	353, 520
TspDTI	ATGAA	7 cut(s)	135, 211, 486, 552, 782, 840, 890
TspRI	CASTG	4 cut(s)	198, 405, 472, 516
XapI	RAATTY	2 cut(s)	135, 828
XbaI	TCTAGA	1 cut(s)	8
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	3 cut(s)	9, 228, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.