Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017520

Physical Location & Seq

Genomic Coordinates Reverse (-)

10748751 .. 10749734

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATAAAATGTTATGCTTCAAAAATAATTTTATTTTATTTTCAATTTCATGGTGCGGTACACAAAGTGTTGGCAGCTTGGTTCAAGCTAAAATACCCATACATAGCGCTCGGGGCTTTAGCATCCTCAGCCCCCCTCCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTTTTACATAGTAACCAAAGTTTTCAAGGAAATGAGCAAGGAATGTCATAACAAGATACATAAATCTTGGGATGAAATAGACAGGATTGCTGCCAAACCTAACAGTCTCTCAATCCTCAGCAAAAATTTCAAGCTGTGCAATCCTTTGAACGACATTATCGAACTCAAAAGCTATGTGAGTTACATATACGCGAGGACAGCTCAATACAGCGACAATCAGTTCTCGGTTGCCAGGTTGTGTGAGGCTATTAACACAAGCCCACCAAACACTAAGAGTGATCTACTAGACCAGATCTTCGCAGGTGTGGTTGCTTCTAGAGGAAATATTTCTTGTTATGGTATGTCGTCGCCGTCGTATCAGATGACAAATGACGATAGGGCATGGGGATGGCAGACTATCCATATCAGTGTGACATTGTCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

199

Amino Acids

22.63

Weight (kDa)

8.98

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	23 - 191	2.3e-20	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28680
fragaria_vesca	FvH4_3g28620
rosa_chinensis	RchiOBHm_Chr5g0052461 RchiOBHm_Chr5g0052471
rosa_laevigata	RLG00000034817
rosa_multiflora	Rmu_sc0006803.1_g000044
rosa_roxburghii	Rroxscaffold_1G00028350
rosa_rugosa	Rorug05G0271800
rosa_samantha	Rh5BG355500 Rh5CG380900 Rh5DG370700
rosa_wichuraiana	Rw5G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	1 cut(s)	365
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	298
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	7 cut(s)	21, 44, 85, 149, 199, 304, 322
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	5 cut(s)	77, 88, 307, 345, 374
AluI	AGCT	5 cut(s)	77, 88, 307, 345, 374
Alw26I	GTCTC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	74, 263
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
Asp700I	GAANNNNTTC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	2 cut(s)	127, 290
BbvI	GCAGC	2 cut(s)	86, 250
BccI	CCATC	1 cut(s)	555
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	458, 489
BfoI	RGCGCY	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	464
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	2 cut(s)	75, 264
BlsI	GCNGC	2 cut(s)	76, 265
Bme1390I	CCNGG	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu10I	CCTNAGC	2 cut(s)	127, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	406
BseGI	GGATG	3 cut(s)	122, 250, 566
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	141, 304
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	86, 250
Bsh1236I	CGCG	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	451, 465
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	140, 303
BspFNI	CGCG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	464
BssMI	GATC	2 cut(s)	451, 465
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	127, 290, 444
BstF5I	GGATG	3 cut(s)	122, 250, 566
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	454, 468
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	451, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 128, 371
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	404
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	86, 250
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	122, 250, 566
BtsIMutI	CAGTG	1 cut(s)	586
BveI	ACCTGC	1 cut(s)	464
CfoI	GCGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	50, 167, 555
CviJI	RGCY	9 cut(s)	77, 88, 116, 131, 307, 345, 374, 419, 432
CviKI_1	RGCY	9 cut(s)	77, 88, 116, 131, 307, 345, 374, 419, 432
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	3 cut(s)	127, 290, 444
DpnI	GATC	2 cut(s)	453, 467
DpnII	GATC	2 cut(s)	451, 465
DraIII	CACNNNGTG	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	53, 170, 558
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	3 cut(s)	49, 166, 554
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	2 cut(s)	75, 264
FokI	GGATG	3 cut(s)	109, 257, 573
Fsp4HI	GCNGC	2 cut(s)	75, 264
FspBI	CTAG	2 cut(s)	458, 489
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	75, 264
HaeII	RGCGCY	1 cut(s)	110
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	53, 170, 558
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	61, 594
Hpy188I	TCNGA	1 cut(s)	534
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	2 cut(s)	61, 594
Hpy99I	CGWCG	2 cut(s)	523, 529
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 128, 371
HpyF3I	CTNAG	3 cut(s)	127, 290, 444
Hsp92II	CATG	3 cut(s)	53, 170, 558
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	451, 465
LpnPI	CCDG	5 cut(s)	241, 391, 418, 459, 476
Lsp1109I	GCAGC	2 cut(s)	86, 250
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	458, 489
MaeIII	GTNAC	4 cut(s)	170, 184, 353, 583
MalI	GATC	2 cut(s)	453, 467
MboI	GATC	2 cut(s)	451, 465
MboII	GAAGA	2 cut(s)	161, 460
MflI	RGATCY	1 cut(s)	465
MluCI	AATT	3 cut(s)	27, 44, 298
MnlI	CCTC	7 cut(s)	136, 146, 149, 299, 360, 409, 485
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	2 cut(s)	423, 598
MslI	CAYNNNNRTG	2 cut(s)	559, 579
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	113, 128, 371
NdeII	GATC	2 cut(s)	451, 465
NlaIII	CATG	3 cut(s)	53, 170, 558
NmuCI	GTSAC	1 cut(s)	583
PaqCI	CACCTGC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 524
PdmI	GAANNNNTTC	1 cut(s)	499
PflFI	GACNNNGTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	76, 265
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	465
PsyI	GACNNNGTC	1 cut(s)	589
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	559, 579
SaqAI	TTAA	2 cut(s)	423, 598
SatI	GCNGC	2 cut(s)	75, 264
Sau3AI	GATC	2 cut(s)	451, 465
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	8 cut(s)	79, 90, 274, 309, 347, 376, 410, 478
SfaNI	GCATC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	559, 579
Sse9I	AATT	3 cut(s)	27, 44, 298
SsiI	CCGC	1 cut(s)	56
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	458, 489
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	27, 44, 298
Tru1I	TTAA	2 cut(s)	423, 598
Tru9I	TTAA	2 cut(s)	423, 598
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	74, 263
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	2 cut(s)	38, 261
TspRI	CASTG	1 cut(s)	586
Tth111I	GACNNNGTC	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	2 cut(s)	458, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.