Rorug05G0271800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000244
Physical Location & Seq
Reverse (-)
30670445 .. 30674858
4414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0271800.1

Sequence Viewer

Length: 534 bp
ATGTCTCTCTGTGAGGATTTTACAGCTTACGAACGGCTTGGGGCCGACGGCCGCCACCCCGATGTTGCCGGCTTCCTGAAATCACGTGGCATTGTTATGGCAGACACTGGTGGTTCTCCTGGACCAAACAGCACTCGCAGTTTGTCACGCATCATTCAGAAGTGGTATACAGTCGGCCCCCCTGAGGATAGATGTTTGATTTGTTGCTTGGATGAACACACTTCATTTCTATGCCCGTACAATGTTGAAGTCCCAAAGAATGCAATTGTAGGCAGCGGCTGTGACGTAATTTGTAAGGTTTGTGATCGTTTGTTCTTTGGGCGCTGTTGTAACCAAGATACAGGACGTGCTAAGCTCAAGTTTTGTGATATCTGTTTCAAGTATGGCGAACACTGGATGCTGCAGTGCCCACGCAAGCCTGAATGTGATCTCAGTAAAATCGGGGATTCTTCTGATCACTTAATTGCATGTGCAGCTACAGGTCGTCCTCCAATTGTAAATGTGAGGAAGAAAAAGAAGATAAATGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

177

Amino Acids

19.57

Weight (kDa)

8.49

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AciI CCGC 2 cut(s) 52, 276
AcoI YGGCCR 1 cut(s) 49
AcvI CACGTG 1 cut(s) 86
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 248, 379
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 26, 355, 476
AluI AGCT 3 cut(s) 26, 355, 476
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 2 cut(s) 107, 279
AoxI GGCC 3 cut(s) 42, 49, 175
ApeKI GCWGC 3 cut(s) 273, 400, 473
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 3 cut(s) 42, 122, 176
AvaII GGWCC 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 410
BbrPI CACGTG 1 cut(s) 86
BbvI GCAGC 3 cut(s) 285, 387, 485
BceAI ACGGC 2 cut(s) 50, 64
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 401, 477
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 5 cut(s) 52, 274, 277, 401, 474
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 5 cut(s) 53, 275, 278, 402, 475
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 42, 122, 176
BmiI GGNNCC 2 cut(s) 43, 178
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 159, 387
Bpu1102I GCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 112, 398
Bse21I CCTNAGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 217, 402
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 174, 445
BseNI ACTGG 2 cut(s) 112, 398
BseSI GKGCMC 1 cut(s) 410
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 285, 387, 485
BsgI GTGCAG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 3 cut(s) 44, 51, 177
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 3 cut(s) 44, 51, 177
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 304, 427, 454
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 52, 276
BspANI GGCC 3 cut(s) 44, 51, 177
BspCNI CTCAG 2 cut(s) 175, 444
BspLI GGNNCC 2 cut(s) 43, 178
BspMAI CTGCAG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 112, 398
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 3 cut(s) 304, 427, 454
BssNAI GTATAC 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 70, 416
BstDEI CTNAG 3 cut(s) 183, 351, 431
BstF5I GGATG 2 cut(s) 217, 402
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 307, 430, 457
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 304, 427, 454
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 2 cut(s) 401, 477
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 285, 387, 485
BstZ17I GTATAC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 44, 51, 177
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 217, 402
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 3 cut(s) 105, 391, 410
Cac8I GCNNGC 2 cut(s) 70, 416
CaiI CAGNNNCTG 2 cut(s) 107, 279
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 42, 122, 176
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 468
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 183, 351, 431
DpnI GATC 3 cut(s) 306, 429, 456
DpnII GATC 3 cut(s) 304, 427, 454
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 122
Eco52I CGGCCG 1 cut(s) 49
Eco72I CACGTG 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 370
FaeI CATG 1 cut(s) 471
FaiI YATR 5 cut(s) 98, 168, 232, 384, 469
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 5 cut(s) 52, 274, 277, 401, 474
FokI GGATG 2 cut(s) 224, 409
Fsp4HI GCNGC 5 cut(s) 52, 274, 277, 401, 474
GlaI GCGC 1 cut(s) 323
GluI GCNGC 5 cut(s) 52, 274, 277, 401, 474
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 3 cut(s) 44, 51, 177
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 471
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 1 cut(s) 446
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 159, 454
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 3 cut(s) 85, 285, 346
HpyCH4V TGCA 4 cut(s) 263, 403, 467, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 3 cut(s) 183, 351, 431
HpySE526I ACGT 3 cut(s) 85, 285, 346
Hsp92II CATG 1 cut(s) 471
HspAI GCGC 1 cut(s) 322
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 304, 427, 454
Lsp1109I GCAGC 3 cut(s) 285, 387, 485
LweI GCATC 2 cut(s) 159, 387
MaeII ACGT 3 cut(s) 85, 285, 346
MaeIII GTNAC 3 cut(s) 144, 281, 329
MalI GATC 3 cut(s) 306, 429, 456
MboI GATC 3 cut(s) 304, 427, 454
MboII GAAGA 3 cut(s) 441, 520, 529
MfeI CAATTG 2 cut(s) 264, 492
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 4 cut(s) 264, 288, 462, 492
MnlI CCTC 4 cut(s) 7, 178, 498, 498
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 3 cut(s) 60, 95, 229
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 2 cut(s) 264, 492
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 473
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 3 cut(s) 304, 427, 454
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 2 cut(s) 43, 178
NmuCI GTSAC 2 cut(s) 144, 281
NspI RCATGY 1 cut(s) 471
PctI GAATGC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 53, 275, 278, 402, 475
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 118
PspCI CACGTG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 43, 178
PspPI GGNCC 3 cut(s) 42, 122, 176
PstI CTGCAG 1 cut(s) 405
PstNI CAGNNNCTG 2 cut(s) 107, 279
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 3 cut(s) 60, 95, 229
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 5 cut(s) 52, 274, 277, 401, 474
Sau3AI GATC 3 cut(s) 304, 427, 454
Sau96I GGNCC 3 cut(s) 42, 122, 176
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 410
SetI ASST 8 cut(s) 28, 88, 288, 300, 349, 357, 478, 484
SfaNI GCATC 2 cut(s) 159, 387
SfcI CTRYAG 2 cut(s) 401, 477
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 3 cut(s) 60, 95, 229
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 264, 288, 462, 492
SsiI CCGC 2 cut(s) 52, 276
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 3 cut(s) 88, 288, 349
TasI AATT 4 cut(s) 264, 288, 462, 492
TauI GCSGC 2 cut(s) 54, 279
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 3 cut(s) 112, 398, 410
TseFI GTSAC 2 cut(s) 144, 281
TseI GCWGC 3 cut(s) 273, 400, 473
Tsp45I GTSAC 2 cut(s) 144, 281
TspDTI ATGAA 2 cut(s) 213, 228
TspRI CASTG 3 cut(s) 112, 398, 410
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.