MD02G1272200.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000244
Physical Location & Seq
Reverse (-)
32651755 .. 32654826
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1272200.v1.1.491

Sequence Viewer

Length: 969 bp
ATGTTAGATGAAGTTTACCATTGTGAGTTAGGGATGGATCACTACGACCTGCATAGACAGAGAAGGGATTTGAAGCACAAAGGAAGAAATGTTGGAAGAAATGTTGTATGGTCACTTGCAATGGATAAGTGTTTAATTGATTGCCTTGCTATTCAAGCTAGACATGGAAACAAAATTGACAAGAGCTTTAATGAACATGCTTACACTGCTGCTTGTATTGCTGTGAACTCTCGTTTCAACTTGAATTTAAACAATCAAAAAGTCATTAATCGTCTTAAGACCATAAAGAAGAGGTATAAGGCAATGAAGGATATCCTGAGTCAAGATGGGTTCAGGTGGAATCCCACTACAAAGATGATTGAGTGTGACAATGAAGAACTTTGGAAGAGATACATTGCAGCACATCCTGATGCAAAAGGGTTTCGAGGAAAGCCAATAGAGATGTATGATGAACTCAAAATTGTTTGTGGAAACTATCAAGTCCCTAGTCGCTGGGCTAAGATGAAAGATGGAGGCCATCCAAGTGAGATGAAGAATTTTGAAGATGATTCTGCCTCATTTCTTTCTCCAAGCTCAGATGACCTAAGTGAGACAGACGGAACCGAGTCATATAGTGGACCAGAAGAAGAATTTACCAAGTTGCCAGATGGTAGTCAAGACCCCCCTCTGATCCAGCCACTTAGACAACTTCCAAAACGCCCTCGTGGCTCAGAAGCCGTTCAGGATGCACTGATGACTGTGGCATCAAGCATTCGTTGCTTGGCTGATGCAATGGAGCAAAGCAAATACTCTATTGATGCCTCTCAACTACTACAGGCTGTGATGGAGATTGATGGTTTGGAAGAGGCTAAACAGATGTATGCATTTGAGTATTTGAATGCTGACCCTGTCAAAGCTCGAGCTTTCATAACATACGATGCTCGGATGAGAAAAATATACTTGTTTAGACAGTTCTGGTGGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

323

Amino Acids

37.27

Weight (kDa)

7.07

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 37 - 131 1.8e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 45, 664
AcsI RAATTY 3 cut(s) 244, 535, 629
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 6 cut(s) 73, 155, 238, 244, 542, 877
AluBI AGCT 5 cut(s) 158, 186, 573, 896, 902
AluI AGCT 5 cut(s) 158, 186, 573, 896, 902
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 2 cut(s) 45, 664
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 209, 398
ApoI RAATTY 3 cut(s) 244, 535, 629
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 617
BauI CACGAG 1 cut(s) 702
BbvI GCAGC 2 cut(s) 196, 410
BccI CCATC 7 cut(s) 28, 320, 503, 525, 641, 817, 827
BceAI ACGGC 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 2 cut(s) 159, 486
BfmI CTRYAG 1 cut(s) 812
BfrI CTTAAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 705
BisI GCNGC 2 cut(s) 210, 399
BlsI GCNGC 2 cut(s) 211, 400
Bme18I GGWCC 1 cut(s) 617
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 601
BmsI GCATC 6 cut(s) 400, 715, 752, 757, 787, 907
Bse3DI GCAATG 4 cut(s) 126, 309, 393, 777
BseGI GGATG 5 cut(s) 39, 403, 517, 730, 930
BseMI GCAATG 4 cut(s) 126, 309, 393, 777
BseMII CTCAG 3 cut(s) 308, 588, 723
BseXI GCAGC 2 cut(s) 196, 410
BseYI CCCAGC 1 cut(s) 492
BshFI GGCC 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 897
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 2 cut(s) 750, 883
BsnI GGCC 1 cut(s) 516
BsoBI CYCGRG 1 cut(s) 897
Bsp143I GATC 2 cut(s) 37, 669
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 3 cut(s) 309, 587, 722
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 45, 664
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 4 cut(s) 126, 309, 393, 777
BssMI GATC 2 cut(s) 37, 669
BssSI CACGAG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 739, 951
Bst6I CTCTTC 3 cut(s) 284, 380, 837
BstAFI CTTAAG 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 756
BstDEI CTNAG 6 cut(s) 317, 498, 574, 584, 680, 709
BstF5I GGATG 5 cut(s) 39, 403, 517, 730, 930
BstKTI GATC 2 cut(s) 40, 672
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 2 cut(s) 37, 669
BstMWI GCNNNNNNNGC 5 cut(s) 155, 206, 218, 705, 756
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 812
BstV1I GCAGC 2 cut(s) 196, 410
BsuRI GGCC 1 cut(s) 516
BtsCI GGATG 5 cut(s) 39, 403, 517, 730, 930
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 728
BveI ACCTGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 617
CviAII CATG 2 cut(s) 164, 197
DdeI CTNAG 6 cut(s) 317, 498, 574, 584, 680, 709
DpnI GATC 2 cut(s) 39, 671
DpnII GATC 2 cut(s) 37, 669
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 284, 380, 837
EarI CTCTTC 3 cut(s) 284, 380, 837
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 897
EcoRV GATATC 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 865
FaeI CATG 2 cut(s) 167, 200
FaqI GGGAC 1 cut(s) 467
FatI CATG 2 cut(s) 163, 196
Fnu4HI GCNGC 2 cut(s) 210, 399
FokI GGATG 5 cut(s) 46, 390, 504, 737, 937
Fsp4HI GCNGC 2 cut(s) 210, 399
FspBI CTAG 2 cut(s) 159, 486
GluI GCNGC 2 cut(s) 210, 399
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 1 cut(s) 516
Hin1II CATG 2 cut(s) 167, 200
HinfI GANTC 4 cut(s) 319, 340, 548, 605
Hpy166II GTNNAC 3 cut(s) 16, 226, 617
Hpy188I TCNGA 4 cut(s) 577, 669, 712, 924
Hpy188III TCNNGA 5 cut(s) 316, 323, 407, 656, 722
Hpy8I GTNNAC 3 cut(s) 16, 226, 617
HpyAV CCTTC 2 cut(s) 57, 301
HpyCH4III ACNGT 2 cut(s) 739, 951
HpyCH4V TGCA 7 cut(s) 52, 119, 398, 413, 728, 770, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 206, 218, 705, 756
HpyF3I CTNAG 6 cut(s) 317, 498, 574, 584, 680, 709
Hsp92II CATG 2 cut(s) 167, 200
Kzo9I GATC 2 cut(s) 37, 669
LmnI GCTCC 1 cut(s) 775
Lsp1109I GCAGC 2 cut(s) 196, 410
LweI GCATC 6 cut(s) 400, 715, 752, 757, 787, 907
MaeI CTAG 2 cut(s) 159, 486
MaeIII GTNAC 2 cut(s) 111, 365
MalI GATC 2 cut(s) 39, 671
MboI GATC 2 cut(s) 37, 669
MluCI AATT 6 cut(s) 135, 174, 244, 459, 535, 629
MlyI GAGTC 2 cut(s) 328, 614
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 8 cut(s) 285, 419, 506, 565, 675, 711, 811, 838
Mph1103I ATGCAT 1 cut(s) 865
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 5 cut(s) 134, 189, 248, 267, 276
MslI CAYNNNNRTG 2 cut(s) 408, 522
MspCI CTTAAG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 750, 883
MwoI GCNNNNNNNGC 5 cut(s) 155, 206, 218, 705, 756
NdeII GATC 2 cut(s) 37, 669
NlaIII CATG 2 cut(s) 167, 200
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 111, 365
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 897
PctI GAATGC 2 cut(s) 750, 883
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 340, 548
PflFI GACNNNGTC 1 cut(s) 887
PkrI GCNGC 2 cut(s) 211, 400
PleI GAGTC 2 cut(s) 327, 613
PpsI GAGTC 2 cut(s) 327, 613
PshBI ATTAAT 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 617
PspXI VCTCGAGB 1 cut(s) 897
PsyI GACNNNGTC 1 cut(s) 887
RseI CAYNNNNRTG 2 cut(s) 408, 522
SaqAI TTAA 5 cut(s) 134, 189, 248, 267, 276
SatI GCNGC 2 cut(s) 210, 399
Sau3AI GATC 2 cut(s) 37, 669
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 2 cut(s) 328, 614
SetI ASST 9 cut(s) 51, 160, 188, 296, 338, 575, 585, 898, 904
SfaNI GCATC 6 cut(s) 400, 715, 752, 757, 787, 907
SfcI CTRYAG 1 cut(s) 812
Sfr274I CTCGAG 1 cut(s) 897
SinI GGWCC 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 897
SmiMI CAYNNNNRTG 2 cut(s) 408, 522
SmlI CTYRAG 2 cut(s) 275, 897
SmoI CTYRAG 2 cut(s) 275, 897
Sse9I AATT 6 cut(s) 135, 174, 244, 459, 535, 629
SspMI CTAG 2 cut(s) 159, 486
TaaI ACNGT 2 cut(s) 739, 951
TaqI TCGA 2 cut(s) 424, 898
TasI AATT 6 cut(s) 135, 174, 244, 459, 535, 629
TfiI GAWTC 2 cut(s) 340, 548
Tru1I TTAA 5 cut(s) 134, 189, 248, 267, 276
Tru9I TTAA 5 cut(s) 134, 189, 248, 267, 276
TscAI CASTG 2 cut(s) 211, 735
TseFI GTSAC 2 cut(s) 111, 365
TseI GCWGC 2 cut(s) 209, 398
Tsp45I GTSAC 2 cut(s) 111, 365
TspDTI ATGAA 8 cut(s) 24, 207, 320, 387, 465, 518, 545, 895
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 2 cut(s) 211, 735
Tth111I GACNNNGTC 1 cut(s) 887
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 617
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 3 cut(s) 244, 535, 629
XceI RCATGY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 897
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 2 cut(s) 159, 486
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.