Rw5G023350
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000244
Physical Location & Seq
Forward (+)
32879944 .. 32880976
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023350.1

Sequence Viewer

Length: 858 bp
ATGAGTAGACTTGGAGGAAACGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAAAGCAAAGGAAAGGCTGAAGGCAAGAACTATTTGCAGTGGAATTTAGATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTACGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGATGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGCATCAGAAGATATTCACATCATTGAGAACAGTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAATAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

285

Amino Acids

32.26

Weight (kDa)

6.87

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 33 - 128 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 856
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 576, 619
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 236, 650, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 5 cut(s) 185, 191, 203, 404, 411
AluI AGCT 5 cut(s) 185, 191, 203, 404, 411
Alw26I GTCTC 2 cut(s) 396, 568
AlwI GGATC 1 cut(s) 856
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 4 cut(s) 281, 495, 637, 657
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 510
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 396, 568
BfaI CTAG 2 cut(s) 570, 729
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 721
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 797
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 481, 803
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 481, 803
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 396, 568
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 721, 848
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 550
BspHI TCATGA 1 cut(s) 394
BspPI GGATC 1 cut(s) 856
BsrI ACTGG 2 cut(s) 481, 803
BssMI GATC 2 cut(s) 721, 848
Bst4CI ACNGT 5 cut(s) 225, 263, 368, 515, 780
Bst6I CTCTTC 2 cut(s) 571, 586
BstC8I GCNNGC 2 cut(s) 120, 751
BstDEI CTNAG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 2 cut(s) 724, 851
BstMAI GTCTC 2 cut(s) 396, 568
BstMBI GATC 2 cut(s) 721, 848
BstNSI RCATGY 1 cut(s) 753
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 721, 848
BstYI RGATCY 2 cut(s) 721, 848
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 4 cut(s) 104, 373, 474, 810
Cac8I GCNNGC 2 cut(s) 120, 751
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 575, 618
CviAII CATG 5 cut(s) 273, 395, 709, 750, 787
CviQI GTAC 2 cut(s) 575, 618
DdeI CTNAG 1 cut(s) 537
DpnI GATC 2 cut(s) 723, 850
DpnII GATC 2 cut(s) 721, 848
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 571, 586
EarI CTCTTC 2 cut(s) 571, 586
Eco32I GATATC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 304
FaeI CATG 5 cut(s) 276, 398, 712, 753, 790
FaqI GGGAC 1 cut(s) 785
FatI CATG 5 cut(s) 272, 394, 708, 749, 786
FauNDI CATATG 1 cut(s) 844
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 570, 729
GlaI GCGC 1 cut(s) 754
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 1 cut(s) 755
Hin1II CATG 5 cut(s) 276, 398, 712, 753, 790
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 332, 426
HphI GGTGA 1 cut(s) 510
Hpy166II GTNNAC 3 cut(s) 8, 518, 575
Hpy188I TCNGA 2 cut(s) 490, 540
Hpy188III TCNNGA 4 cut(s) 140, 307, 395, 729
Hpy8I GTNNAC 3 cut(s) 8, 518, 575
HpyAV CCTTC 3 cut(s) 50, 74, 787
HpyCH4III ACNGT 5 cut(s) 225, 263, 368, 515, 780
HpyCH4V TGCA 3 cut(s) 97, 221, 854
HpyF3I CTNAG 1 cut(s) 537
Hsp92II CATG 5 cut(s) 276, 398, 712, 753, 790
HspAI GCGC 1 cut(s) 753
Kzo9I GATC 2 cut(s) 721, 848
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 140, 462, 816
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 494
MaeI CTAG 2 cut(s) 570, 729
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 723, 850
MboI GATC 2 cut(s) 721, 848
MboII GAAGA 6 cut(s) 389, 503, 558, 603, 662, 746
MflI RGATCY 2 cut(s) 721, 848
MluCI AATT 3 cut(s) 103, 291, 433
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 8 cut(s) 8, 16, 136, 143, 346, 475, 588, 591
MroXI GAANNNNTTC 4 cut(s) 281, 495, 637, 657
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 203
NdeI CATATG 1 cut(s) 844
NdeII GATC 2 cut(s) 721, 848
NlaIII CATG 5 cut(s) 276, 398, 712, 753, 790
NspI RCATGY 1 cut(s) 753
PaeI GCATGC 1 cut(s) 753
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 4 cut(s) 281, 495, 637, 657
PfeI GAWTC 2 cut(s) 332, 426
PkrI GCNGC 1 cut(s) 205
PsiI TTATAA 1 cut(s) 195
PspPI GGNCC 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 721, 848
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 576, 619
RsaNI GTAC 2 cut(s) 575, 618
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 721, 848
Sau96I GGNCC 1 cut(s) 157
SetI ASST 8 cut(s) 27, 154, 187, 193, 205, 406, 413, 580
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 753
Sse9I AATT 3 cut(s) 103, 291, 433
SspMI CTAG 2 cut(s) 570, 729
TaaI ACNGT 5 cut(s) 225, 263, 368, 515, 780
TasI AATT 3 cut(s) 103, 291, 433
TfiI GAWTC 2 cut(s) 332, 426
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 4 cut(s) 104, 373, 481, 810
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 7 cut(s) 69, 375, 414, 567, 630, 827, 831
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 4 cut(s) 104, 373, 481, 810
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 728
XceI RCATGY 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 4 cut(s) 281, 495, 637, 657
XspI CTAG 2 cut(s) 570, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.