FvH4_4g15662
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000244
Physical Location & Seq
Reverse (-)
19546822 .. 19547855
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15662.t1

Sequence Viewer

Length: 915 bp
ATGAGTAATCTTGGAGGAAATGAGATCAAAGATCGAAAACTACCCAATGTCAAGAGTGACGGAAATGACAAAGGAAAGACTGAAGGCAAGAACTATTTGCAGTGGAATTTAGCTATGGAGCGTGATTTGGCTGAAGTACTTTGTGAGGAGCGCAGTTTGGGACATAAAGGAGATAACGGTTGGAAAGGTGTAGATTATACTACAGCTGCTAATACTTTATCTGCACAATTTGCAATTCAAATAACTGCAGATAATATAAAAAATCGGGTCAAGTCGTGGAAAAAGTATTATGGAGTCGTGAGTGATATCTTGAGCCAAAGTGGATTTAGTTGGGACTCCTCGACACAAATGATAAACGTTGATGAAAATAGTGTATGGGAAGAATATATAAAGAGAATCTCAAATTGGGATGATATAGTTGATCTGTGTGGCAAAAATAGAGCCACTGGAGAGGACGCTGAAACTGGTTTTGAAGCCACTGAGGTAATGACTCCTCCTGCTAGTGAGCATAATCATGTCGATTTGGAAAATGATGACCAAATTTTTGGAGATATTCACATTATTGAAGACAATTCACCCGACCAAGCAATTGCAAAGAAAAAGAGAAATGAAACAACACCTTCTTCTAGCGTCCCTCCTCAAAAGAAAAGAGTTACAACTAAAGATGTTTTGGGTACTTCGGTGGATAGAATGGCTTCGTCATTTGAAGAACTTATTCCTGCAACTACTAAAAGTCTTGCCCCAAAAGATGTATGGAAGGAAATTATGGCAATACCAGATCTCTCTAGAGAAGAACAAATAAAAGCATGTGCTTGGTTCATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAATGGAGATGAAAAAAGACATGGCATTGATGTTTATTTCAAATGTATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

305

Amino Acids

34.19

Weight (kDa)

4.93

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 34 - 129 1.2e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 357
AcsI RAATTY 2 cut(s) 106, 540
AcuI CTGAAG 2 cut(s) 102, 153
AfaI GTAC 2 cut(s) 138, 676
AgsI TTSAA 6 cut(s) 239, 473, 566, 707, 850, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 2 cut(s) 113, 206
AluI AGCT 2 cut(s) 113, 206
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 2 cut(s) 106, 540
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
Asp700I GAANNNNTTC 2 cut(s) 694, 714
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 666, 699
BbsI GAAGAC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 193
BfaI CTAG 3 cut(s) 501, 627, 786
BfmI CTRYAG 2 cut(s) 201, 246
BglII AGATCT 1 cut(s) 778
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 451, 469
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 451, 469
BseRI GAGGAG 4 cut(s) 161, 328, 483, 627
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 207
BslFI GGGAC 4 cut(s) 174, 347, 617, 842
BsmFI GGGAC 4 cut(s) 174, 347, 617, 842
Bsp143I GATC 4 cut(s) 24, 31, 421, 778
BspCNI CTCAG 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 250
BsrI ACTGG 2 cut(s) 451, 469
BssMI GATC 4 cut(s) 24, 31, 421, 778
Bst4CI ACNGT 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 4 cut(s) 27, 34, 424, 781
BstMBI GATC 4 cut(s) 24, 31, 421, 778
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 810
BstSFI CTRYAG 2 cut(s) 201, 246
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 778
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 444, 477
CfoI GCGC 1 cut(s) 153
CseI GACGC 2 cut(s) 464, 619
Csp6I GTAC 2 cut(s) 137, 675
CviAII CATG 4 cut(s) 515, 807, 844, 880
CviJI RGCY 7 cut(s) 113, 131, 206, 315, 443, 476, 695
CviKI_1 RGCY 7 cut(s) 113, 131, 206, 315, 443, 476, 695
CviQI GTAC 2 cut(s) 137, 675
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 26, 33, 423, 780
DpnII GATC 4 cut(s) 24, 31, 421, 778
Eco32I GATATC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 102, 153
EcoRV GATATC 1 cut(s) 307
FaeI CATG 4 cut(s) 518, 810, 847, 883
FaqI GGGAC 4 cut(s) 174, 347, 617, 842
FatI CATG 4 cut(s) 514, 806, 843, 879
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 3 cut(s) 501, 627, 786
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 468
HgaI GACGC 2 cut(s) 464, 619
HhaI GCGC 1 cut(s) 153
Hin1II CATG 4 cut(s) 518, 810, 847, 883
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 4 cut(s) 294, 335, 396, 490
HphI GGTGA 1 cut(s) 567
Hpy188III TCNNGA 4 cut(s) 52, 298, 310, 786
HpyAV CCTTC 4 cut(s) 77, 630, 751, 844
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 7 cut(s) 100, 224, 233, 248, 593, 722, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 4 cut(s) 518, 810, 847, 883
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 24, 31, 421, 778
LmnI GCTCC 2 cut(s) 118, 148
LpnPI CCDG 5 cut(s) 432, 450, 510, 732, 789
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 3 cut(s) 501, 627, 786
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 56, 652
MalI GATC 4 cut(s) 26, 33, 423, 780
MboI GATC 4 cut(s) 24, 31, 421, 778
MboII GAAGA 5 cut(s) 392, 578, 615, 719, 803
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 778
MluCI AATT 9 cut(s) 106, 227, 234, 403, 540, 571, 588, 762, 836
MlyI GAGTC 3 cut(s) 303, 329, 484
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 8 cut(s) 8, 139, 349, 445, 475, 504, 645, 648
MroXI GAANNNNTTC 2 cut(s) 694, 714
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 588
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 24, 31, 421, 778
NlaIII CATG 4 cut(s) 518, 810, 847, 883
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 810
PdmI GAANNNNTTC 2 cut(s) 694, 714
PfeI GAWTC 1 cut(s) 396
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 3 cut(s) 302, 329, 484
PpsI GAGTC 3 cut(s) 302, 329, 484
Psp1406I AACGTT 1 cut(s) 357
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 138, 676
RsaNI GTAC 2 cut(s) 137, 675
RseI CAYNNNNRTG 1 cut(s) 513
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 24, 31, 421, 778
ScaI AGTACT 1 cut(s) 138
SchI GAGTC 3 cut(s) 303, 329, 484
SetI ASST 6 cut(s) 115, 190, 208, 360, 486, 622
SfcI CTRYAG 2 cut(s) 201, 246
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 9 cut(s) 106, 227, 234, 403, 540, 571, 588, 762, 836
SspMI CTAG 3 cut(s) 501, 627, 786
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 34, 341, 519
TasI AATT 9 cut(s) 106, 227, 234, 403, 540, 571, 588, 762, 836
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 396
TscAI CASTG 3 cut(s) 107, 451, 484
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 378, 624, 808, 884
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 3 cut(s) 107, 451, 484
XapI RAATTY 2 cut(s) 106, 540
XbaI TCTAGA 1 cut(s) 785
XceI RCATGY 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XmnI GAANNNNTTC 2 cut(s) 694, 714
XspI CTAG 3 cut(s) 501, 627, 786
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.