RLG00000029802
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000244
Physical Location & Seq
Reverse (-)
49475516 .. 49477531
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029802

Sequence Viewer

Length: 747 bp
ATGATTTACAAGGAGATTAATGAGAGTGAGAAATTACTTGTTATCTCCAAAAATAAAGCGGCAACCTTGCCGGTCTTGGATTTGATGAAGAACTCTTGCGCTCATAAGGTGGTCTACTTAATTAGCTTGGTCCCACAAATGATAGATAAGACAGCAAATGAACCTCGTTTCACTCTTCACGGACTTTGGCCTTTCAACGCTACACAATTAGATCCAAACAATATTAACTCTGATTTCCAGTATACATCTATCACAGAGTGTGCCCAGCTTCCTACTAGCTTTCAGGCATCCAGTTACCTACTGGGTTACAAACAGATCTCGCAAAATCTTGGAAAAACACATAATGATGCTTCAAAGTATCGTTTCAAGACAATTGCTAATTGGGATGATATAGTGGATTTGTGTGCAAAGGATAGAGCCCCTAGATGTGGGGCTGAAAATGCAGAGGATGCAAGTGAGACTATGAGCATTGAAGAGGACAATACTAGCCTCAGTGTAACGGGTGGTAGTTTTCAAGATGATAGTTTGAAGAGAAAAGCAGTTTCTTCTACTTCAACAGTTCTGTCACGGCCAAAAAAAGTAAAGGCAGAAGAAACAATTGCTATGGCTGTGTCTGAAATGGCTTCTTCAATCAAAGAAATGGCTTCTAACATGGTTTCAACAACTTCGAAGAAAGCAAATGTGACGGTTGATGAAGTCTATGAAGAGATGATGACAATATCTGATTTAGAAGAAGACCTTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

249

Amino Acids

27.54

Weight (kDa)

5.05

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 114, 242
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 569
AdeI CACNNNGTG 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 9 cut(s) 196, 354, 367, 473, 515, 529, 555, 630, 660
AluBI AGCT 3 cut(s) 126, 268, 279
AluI AGCT 3 cut(s) 126, 268, 279
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 188, 569
AseI ATTAAT 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 668
AvaII GGWCC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 741
BceAI ACGGC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 3 cut(s) 276, 423, 486
BglII AGATCT 1 cut(s) 315
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 296, 337, 439
BmuI ACTGGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 668
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 3 cut(s) 238, 291, 306
BseGI GGATG 3 cut(s) 287, 391, 454
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 505
BseNI ACTGG 3 cut(s) 238, 291, 306
BseSI GKGCMC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 190, 571
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 190, 571
Bsp119I TTCGAA 1 cut(s) 668
Bsp1286I GDGCHC 2 cut(s) 265, 421
Bsp143I GATC 2 cut(s) 211, 315
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 190, 571
BspCNI CTCAG 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 3 cut(s) 238, 291, 306
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 2 cut(s) 211, 315
BssNAI GTATAC 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 559, 688
Bst6I CTCTTC 4 cut(s) 180, 468, 524, 699
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBI TTCGAA 1 cut(s) 668
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 3 cut(s) 287, 391, 454
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 214, 318
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 2 cut(s) 211, 315
BstMWI GCNNNNNNNGC 2 cut(s) 440, 449
BstSLI GKGCMC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 2 cut(s) 211, 315
BstYI RGATCY 2 cut(s) 211, 315
BstZ17I GTATAC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 190, 571
BtsCI GGATG 3 cut(s) 287, 391, 454
BtsIMutI CAGTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 130
CviAII CATG 1 cut(s) 652
DdeI CTNAG 1 cut(s) 491
DpnI GATC 2 cut(s) 213, 317
DpnII GATC 2 cut(s) 211, 315
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 4 cut(s) 180, 468, 524, 699
EarI CTCTTC 4 cut(s) 180, 468, 524, 699
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 1 cut(s) 655
FaiI YATR 8 cut(s) 105, 243, 342, 392, 464, 605, 653, 702
FalI AAGNNNNNCTT 1 cut(s) 723
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 651
FblI GTMKAC 2 cut(s) 114, 242
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 3 cut(s) 274, 398, 461
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 276, 423, 486
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 190, 571
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 655
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 115, 243
Hpy188I TCNGA 3 cut(s) 232, 616, 724
Hpy188III TCNNGA 2 cut(s) 367, 515
Hpy8I GTNNAC 2 cut(s) 115, 243
HpyCH4III ACNGT 2 cut(s) 559, 688
HpyCH4V TGCA 3 cut(s) 407, 443, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 449
HpyF3I CTNAG 1 cut(s) 491
Hsp92II CATG 1 cut(s) 655
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 211, 315
LpnPI CCDG 6 cut(s) 84, 251, 269, 278, 287, 304
LweI GCATC 3 cut(s) 296, 337, 439
MaeI CTAG 3 cut(s) 276, 423, 486
MaeIII GTNAC 5 cut(s) 293, 305, 496, 564, 682
MalI GATC 2 cut(s) 213, 317
MboI GATC 2 cut(s) 211, 315
MfeI CAATTG 2 cut(s) 372, 597
MflI RGATCY 2 cut(s) 211, 315
MhlI GDGCHC 2 cut(s) 265, 421
MluCI AATT 6 cut(s) 32, 120, 206, 372, 379, 597
MnlI CCTC 4 cut(s) 174, 439, 469, 500
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 3 cut(s) 18, 119, 225
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 71
MunI CAATTG 2 cut(s) 372, 597
MwoI GCNNNNNNNGC 2 cut(s) 440, 449
NdeII GATC 2 cut(s) 211, 315
NlaIII CATG 1 cut(s) 655
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 564, 682
NspV TTCGAA 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 738
PkrI GCNGC 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 2 cut(s) 211, 315
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 18, 119, 225
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 211, 315
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 2 cut(s) 265, 421
SetI ASST 8 cut(s) 68, 111, 128, 166, 270, 281, 300, 741
SfaNI GCATC 3 cut(s) 296, 337, 439
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 6 cut(s) 32, 120, 206, 372, 379, 597
SsiI CCGC 1 cut(s) 59
SspI AATATT 1 cut(s) 223
SspMI CTAG 3 cut(s) 276, 423, 486
TaaI ACNGT 2 cut(s) 559, 688
TaqI TCGA 1 cut(s) 668
TasI AATT 6 cut(s) 32, 120, 206, 372, 379, 597
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 18, 119, 225
Tru9I TTAA 3 cut(s) 18, 119, 225
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 2 cut(s) 564, 682
Tsp45I GTSAC 2 cut(s) 564, 682
TspDTI ATGAA 4 cut(s) 101, 174, 708, 717
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 130
VspI ATTAAT 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 2 cut(s) 114, 242
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 3 cut(s) 276, 423, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.