RLG00000034858
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000244
Physical Location & Seq
Forward (+)
56120370 .. 56121328
959 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034858

Sequence Viewer

Length: 555 bp
ATGGATAAGAAGCAACAAGCATTTACTTCAGCTGCGTTGAAGATGTTAGCCAAGTATAATGTAAATGTGACGAAGGACAATGTGAAGAATCACCTCAAAGGTTGGAAAATGACAGCCACCGGATGTGGGGCTAAAAATGCAGAGAATGCAAGTGAGACTATAAGCATTGAAGAGGACAATACTAGCCTCAGTGGAACGGGAGGTAGTTTTCAAGATGATAGTTTGAAGAGAAAAGCAGTTTCTTCTACTTCAACAGTTTCATCAAGGCCAAAAAAAGTACAGGTGGAAGAAACAATTGCTATGGCCGTATCTGAAATGGCTTCTTCAATCAGAGAAATAGCTTCTAGTACGATTTCAACAACTTCGAAGAAAGCAAATGCGACGGTTGATGAAGTTTATGAAGTAATGATGACAATACCTGATTTAGAAGAAAACCTTCGTTGGAAAGCAATTGAAGTGTTTGTTAACAATGCGACAAAGTTTCAAATATTCAAGAAAATTCCACTTGAGAGGAAAAGTAAATTTGTTTTGAAGTCAATGCCACGAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

185

Amino Acids

20.34

Weight (kDa)

9.34

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 2 cut(s) 498, 521
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 2 cut(s) 279, 349
AfiI CCNNNNNNNGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 32, 341
AluI AGCT 2 cut(s) 32, 341
Alw26I GTCTC 2 cut(s) 149, 540
AoxI GGCC 2 cut(s) 266, 303
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 498, 521
Asp700I GAANNNNTTC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 365
BauI CACGAG 1 cut(s) 543
BbvI GCAGC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 149, 540
BfaI CTAG 2 cut(s) 183, 345
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 268, 305
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 149, 540
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 268, 305
Bsp119I TTCGAA 1 cut(s) 365
BspANI GGCC 2 cut(s) 268, 305
BspCNI CTCAG 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 365
BssSI CACGAG 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 256, 385
Bst6I CTCTTC 2 cut(s) 165, 221
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 128
BstMAI GTCTC 2 cut(s) 149, 540
BstMWI GCNNNNNNNGC 2 cut(s) 137, 146
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 268, 305
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 196
Csp6I GTAC 2 cut(s) 278, 348
CviJI RGCY 9 cut(s) 32, 50, 116, 131, 186, 268, 305, 320, 341
CviKI_1 RGCY 9 cut(s) 32, 50, 116, 131, 186, 268, 305, 320, 341
CviQI GTAC 2 cut(s) 278, 348
DdeI CTNAG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 165, 221
EarI CTCTTC 2 cut(s) 165, 221
Eco57I CTGAAG 1 cut(s) 12
FaiI YATR 4 cut(s) 57, 161, 302, 399
FalI AAGNNNNNCTT 2 cut(s) 420, 452
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 183, 345
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 268, 305
HapII CCGG 1 cut(s) 120
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 1 cut(s) 88
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 2 cut(s) 313, 332
Hpy188III TCNNGA 2 cut(s) 212, 493
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 67, 446
HpyCH4III ACNGT 2 cut(s) 256, 385
HpyCH4V TGCA 2 cut(s) 140, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 146
HpyF3I CTNAG 1 cut(s) 188
KspAI GTTAAC 1 cut(s) 466
LpnPI CCDG 3 cut(s) 133, 266, 432
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 2 cut(s) 183, 345
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 9 cut(s) 52, 97, 182, 234, 238, 299, 315, 379, 440
MfeI CAATTG 2 cut(s) 294, 450
MluCI AATT 4 cut(s) 294, 450, 498, 521
MmeI TCCRAC 2 cut(s) 83, 422
MnlI CCTC 5 cut(s) 104, 166, 194, 197, 504
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 120
MunI CAATTG 2 cut(s) 294, 450
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 137, 146
NmuCI GTSAC 1 cut(s) 67
NspV TTCGAA 1 cut(s) 365
PctI GAATGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 279, 349
RsaNI GTAC 2 cut(s) 278, 348
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 1 cut(s) 33
SetI ASST 8 cut(s) 34, 96, 103, 205, 285, 343, 421, 438
SfuI TTCGAA 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 294, 450, 498, 521
SspI AATATT 1 cut(s) 489
SspMI CTAG 2 cut(s) 183, 345
TaaI ACNGT 2 cut(s) 256, 385
TaqI TCGA 1 cut(s) 365
TasI AATT 4 cut(s) 294, 450, 498, 521
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 249, 405, 414
TspRI CASTG 1 cut(s) 196
XapI RAATTY 2 cut(s) 498, 521
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 183, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.