RLG00000019826
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000244
Physical Location & Seq
Forward (+)
57193638 .. 57194581
944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019826

Sequence Viewer

Length: 837 bp
ATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCATTCCAGCAGTTGTGCATGAAGACAATGTGAAGAATAGACTTGAGGCTTGGAAGAGACATTATGCCATTATTTCTGATAACAAGAATCAAAGTCAGCTTATGTGGGATGAAGGTAGGAAGATGGTTGTAATCAGATCAGAAAATCTGGAAGCTTGGAATGATTATGTTGAGTCACATCCTCTTGCATGTGGTTATCAAAACAAATTCATCGATAATTGGGATGACATTGCATTGCTATGTGGGAAGGATAAGACAACAGTTGAAGGTGCAGAGAATATTGAAGATGTTGAAGGAGCTAGGGGAGTTGAAAAGGAAAATGGAGTCAATTTCATTTCTAATTCCCGTAGTCTTACACATCCTTCAGCTTCAACTTCGGAATCACATCCACTGATGAAGCAAGCCAAGAAACATTCGTGGAGGTTTGAAGAAGAAAATGAAGTCAATTCCATTTCTAATTCACATAGCTCAACACATCCTTCAGCATCAACTTCTAACTTGCATCCGAAGAAGAAAGCAAAGAAAGTGAAGAAAGGTCTCTTGGCAGATGCAATTGGTGAGATGACGACTTCACTAAAGGAGTATTTGGCAAGCAAGATGGAGCTGAATAGATCCCAACCCAAAGGTGAAGAAGTATATGAAGTGGTTTCAAAGGTACCAGGGCTCTATAGATTGCAGGTTGTTAAGGCTATACGAGTATTACTGAATGGTAACCCAGAAGAATTCTTTCTATTGAAATATCTTCCTGATGCTGAGAAGACAGAGTGGATACTATACCTTATTAGACATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

279

Amino Acids

31.61

Weight (kDa)

7.78

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 709
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 697
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 2 cut(s) 248, 764
AcuI CTGAAG 2 cut(s) 390, 507
AfaI GTAC 1 cut(s) 699
AgsI TTSAA 8 cut(s) 308, 326, 335, 353, 414, 470, 693, 778
AjnI CCWGG 1 cut(s) 700
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 6 cut(s) 142, 197, 341, 410, 510, 646
AluI AGCT 6 cut(s) 142, 197, 341, 410, 510, 646
Alw26I GTCTC 2 cut(s) 94, 584
AlwI GGATC 1 cut(s) 648
ApoI RAATTY 2 cut(s) 248, 764
Asp700I GAANNNNTTC 1 cut(s) 768
Asp718I GGTACC 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 611, 680
BanI GGYRCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 708
BbsI GAAGAC 2 cut(s) 72, 806
BccI CCATC 2 cut(s) 160, 634
BciT130I CCWGG 1 cut(s) 702
BciVI GTATCC 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 94, 584
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 709
BfuI GTATCC 1 cut(s) 804
Bme1390I CCNGG 1 cut(s) 702
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 4 cut(s) 536, 553, 580, 781
BpiI GAAGAC 2 cut(s) 72, 806
BpuEI CTTGAG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 701
Bse3DI GCAATG 2 cut(s) 270, 275
BseBI CCWGG 1 cut(s) 702
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 7 cut(s) 157, 220, 271, 400, 427, 517, 544
BseMI GCAATG 2 cut(s) 270, 275
BseMII CTCAG 1 cut(s) 786
BsgI GTGCAG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 697
BshVI ATCGAT 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 94, 584
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 2 cut(s) 179, 653
BspCNI CTCAG 1 cut(s) 787
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 699
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 697
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 270, 275
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 2 cut(s) 179, 653
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 30, 304
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 444, 634
BstDEI CTNAG 1 cut(s) 795
BstEII GGTNACC 1 cut(s) 752
BstF5I GGATG 7 cut(s) 157, 220, 271, 400, 427, 517, 544
BstKTI GATC 2 cut(s) 182, 656
BstMAI GTCTC 2 cut(s) 94, 584
BstMBI GATC 2 cut(s) 179, 653
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 2 cut(s) 44, 234
BstPI GGTNACC 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 1 cut(s) 709
BstV2I GAAGAC 2 cut(s) 72, 806
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 1 cut(s) 804
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 7 cut(s) 157, 220, 271, 400, 427, 517, 544
BtsIMutI CAGTG 2 cut(s) 35, 431
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 2 cut(s) 444, 634
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 698
CviAII CATG 3 cut(s) 41, 62, 231
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 1 cut(s) 795
DpnI GATC 2 cut(s) 181, 655
DpnII GATC 2 cut(s) 179, 653
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 390, 507
Eco91I GGTNACC 1 cut(s) 752
EcoO65I GGTNACC 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 708
FaeI CATG 3 cut(s) 44, 65, 234
FatI CATG 3 cut(s) 40, 61, 230
FokI GGATG 7 cut(s) 164, 207, 278, 387, 414, 504, 531
FriOI GRGCYC 1 cut(s) 708
FspBI CTAG 1 cut(s) 342
Hin1II CATG 3 cut(s) 44, 65, 234
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 4 cut(s) 130, 215, 366, 422
HphI GGTGA 2 cut(s) 611, 680
Hpy166II GTNNAC 2 cut(s) 26, 33
Hpy188I TCNGA 5 cut(s) 121, 179, 184, 421, 549
Hpy188III TCNNGA 2 cut(s) 191, 788
Hpy8I GTNNAC 2 cut(s) 26, 33
HpyAV CCTTC 6 cut(s) 149, 283, 302, 329, 414, 531
HpyCH4III ACNGT 2 cut(s) 30, 304
HpyCH4V TGCA 7 cut(s) 61, 230, 275, 314, 544, 593, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 795
Hsp92II CATG 3 cut(s) 44, 65, 234
KpnI GGTACC 1 cut(s) 701
Kzo9I GATC 2 cut(s) 179, 653
LmnI GCTCC 2 cut(s) 338, 643
LpnPI CCDG 7 cut(s) 63, 176, 687, 704, 714, 771, 801
LweI GCATC 4 cut(s) 536, 553, 580, 781
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 216, 752
MalI GATC 2 cut(s) 181, 655
MboI GATC 2 cut(s) 179, 653
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 1 cut(s) 708
MluCI AATT 8 cut(s) 248, 259, 370, 382, 487, 499, 594, 764
MlyI GAGTC 2 cut(s) 224, 375
MnlI CCTC 3 cut(s) 82, 234, 456
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 2 cut(s) 726, 835
MslI CAYNNNNRTG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 179, 653
NlaIII CATG 3 cut(s) 44, 65, 234
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 216
NspI RCATGY 2 cut(s) 44, 234
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 130, 422
PleI GAGTC 2 cut(s) 223, 374
PpsI GAGTC 2 cut(s) 223, 374
Psp6I CCWGG 1 cut(s) 700
PspEI GGTNACC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 699
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 2 cut(s) 726, 835
Sau3AI GATC 2 cut(s) 179, 653
SchI GAGTC 2 cut(s) 224, 375
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 4 cut(s) 536, 553, 580, 781
SfcI CTRYAG 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 8 cut(s) 248, 259, 370, 382, 487, 499, 594, 764
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 30, 304
TaqI TCGA 1 cut(s) 255
TasI AATT 8 cut(s) 248, 259, 370, 382, 487, 499, 594, 764
TfiI GAWTC 2 cut(s) 130, 422
Tru1I TTAA 2 cut(s) 726, 835
Tru9I TTAA 2 cut(s) 726, 835
TscAI CASTG 2 cut(s) 35, 438
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 8 cut(s) 17, 78, 168, 241, 364, 452, 495, 696
TspRI CASTG 2 cut(s) 35, 438
XapI RAATTY 2 cut(s) 248, 764
XceI RCATGY 2 cut(s) 44, 234
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.