Rorug02G0359200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000244
Physical Location & Seq
Reverse (-)
45445409 .. 45445633
225 bp
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UTR
Exon/CDS
Intron
Rorug02G0359200.1

Sequence Viewer

Length: 225 bp
ATGTCTAAAAGAGATGTGATTGTTTGGAATTTGATGATTCGTGGGTTTTGCAAGAGTGGTAATGTCGATACTGGGTTGTGTTTGTTTAGGAAGATGGGTGAGAGGAATGTTATTTCATGGAACTCGATGATTTCGTGCTTAGCGCACTGTGGGAGGGACAATGAAGCTTTGGGGTTTTTTAATAAGATGCAGGAGCAGGGTTTTGAACCGGATGAGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

74

Amino Acids

8.43

Weight (kDa)

6.54

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 3 - 32 1.3e-07 PPR repeat
PPR_2 PF13041 4 - 37 6.6e-08 PPR repeat family
PPR PF01535 8 - 37 3.2e-08 PPR repeat
PPR_2 PF13041 35 - 74 1.2e-10 PPR repeat family
PPR PF01535 38 - 68 8.7e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 28
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 110
BccI CCATC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1720I GCTNAGC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 145
CviAII CATG 1 cut(s) 117
CviJI RGCY 2 cut(s) 167, 218
CviKI_1 RGCY 2 cut(s) 167, 218
DdeI CTNAG 1 cut(s) 139
FaeI CATG 1 cut(s) 120
FaiI YATR 1 cut(s) 118
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 116
GlaI GCGC 1 cut(s) 144
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 51, 190
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 57, 176, 182
LweI GCATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 103
MluCI AATT 1 cut(s) 28
MnlI CCTC 3 cut(s) 96, 147, 208
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 209
NlaIII CATG 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 180
SetI ASST 1 cut(s) 169
SfaNI GCATC 1 cut(s) 177
SgeI CNNG 9 cut(s) 53, 64, 84, 129, 136, 147, 203, 209, 221
Sse9I AATT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 2 cut(s) 66, 125
TasI AATT 1 cut(s) 28
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 105, 177
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.