Rorug04G0061200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000244
Physical Location & Seq
Forward (+)
9605358 .. 9606170
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0061200.1

Sequence Viewer

Length: 813 bp
ATGGTTGTTGAAGACAATGAAGTTCCAAAGAAGAAGAAAGGCAGACCTAAGAAAGAGCTAAAAAGGAGGTATGCCACAAGATTCAAATGGGAGTGCTCCTATGCTCAAGAAAACTTATATGATGATGATGAATCTGATAGTACATCAAGCTTAAAAGATCTGGACTATGACACTATAGTCGACAATGATTATGAAATTTTTGATGAAGATGATGAGGTACTTTTTCAAACAAACATGGATGGTGATCTAAGCAAGCCTGAAGAATGGGAAGAGATGGGGTTTTCTGGTCATATTACTGATGGTGATGGAGACAACTCAGATGGCCTTCATAGTTTAAATGGTGATTTAGATGAGAATGGTGAAGATGTTGGGAGGTTTAAAGTTAAGGGAAAGAGGAGGTGGTCTAAATGGAAGGAGTTCAACAAGAAGTTTGACATGAAGAGGCCAAGTTTTGAACTCGGAATGGCATTTCCCAATTCTGTAATGTTCAAGGATGCAATACAGAAGCATGCTGTATTGACTAAAAAAGAGCTTCGTTTTGGTAAAAACACAAGGCAAAAGGTCAACGTTATTTGCAAGACTTCTCCTGGTTGTCCATTTTGGATATATGCAGCAAGTCCTGATAAAAACACTCCAACTATATACATTAGGACTTTGAGGATGGAGCACAAGTGTAGTGAACTCAAAGGTAGGGTATATCACTGTCATGCCCCTTTCTTTGCTTCTGAGTACAGTGCAAGCTTCACAAATGATGAGAAATGGTCAAGAGAGGGTATTCAAACTACTGTTGGCAGAGACTTTGGCATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

270

Amino Acids

31.39

Weight (kDa)

5.66

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 152 - 206 4.9e-08 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 180
AclI AACGTT 1 cut(s) 567
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 3 cut(s) 142, 219, 731
AgsI TTSAA 7 cut(s) 11, 85, 227, 421, 455, 490, 779
AjnI CCWGG 1 cut(s) 586
AluBI AGCT 4 cut(s) 58, 150, 532, 741
AluI AGCT 4 cut(s) 58, 150, 532, 741
Alw21I GWGCWC 2 cut(s) 98, 669
Alw26I GTCTC 2 cut(s) 303, 789
AoxI GGCC 2 cut(s) 322, 443
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 416
AsuHPI GGTGA 4 cut(s) 254, 314, 353, 371
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 98, 669
BbvI GCAGC 1 cut(s) 623
BccI CCATC 6 cut(s) 233, 268, 293, 299, 314, 655
BciT130I CCWGG 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 303, 789
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 588
BseGI GGATG 3 cut(s) 244, 499, 666
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 2 cut(s) 330, 717
BseRI GAGGAG 1 cut(s) 409
BseXI GCAGC 1 cut(s) 623
BshFI GGCC 2 cut(s) 324, 445
BsiHKAI GWGCWC 2 cut(s) 98, 669
BsmAI GTCTC 2 cut(s) 303, 789
BsnI GGCC 2 cut(s) 324, 445
Bsp1286I GDGCHC 2 cut(s) 98, 669
Bsp143I GATC 2 cut(s) 157, 244
BspANI GGCC 2 cut(s) 324, 445
BspCNI CTCAG 2 cut(s) 329, 718
BssMI GATC 2 cut(s) 157, 244
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 704, 734, 787
Bst6I CTCTTC 2 cut(s) 264, 434
BstC8I GCNNGC 3 cut(s) 254, 510, 739
BstDEI CTNAG 4 cut(s) 48, 248, 316, 726
BstF5I GGATG 3 cut(s) 244, 499, 666
BstKTI GATC 2 cut(s) 160, 247
BstMAI GTCTC 2 cut(s) 303, 789
BstMBI GATC 2 cut(s) 157, 244
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 586
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 324, 445
BtsCI GGATG 3 cut(s) 244, 499, 666
BtsIMutI CAGTG 2 cut(s) 700, 739
Cac8I GCNNGC 3 cut(s) 254, 510, 739
Csp6I GTAC 3 cut(s) 141, 218, 730
CviAII CATG 5 cut(s) 235, 436, 509, 707, 805
CviJI RGCY 7 cut(s) 58, 150, 256, 324, 445, 532, 741
CviKI_1 RGCY 7 cut(s) 58, 150, 256, 324, 445, 532, 741
CviQI GTAC 3 cut(s) 141, 218, 730
DdeI CTNAG 4 cut(s) 48, 248, 316, 726
DpnI GATC 2 cut(s) 159, 246
DpnII GATC 2 cut(s) 157, 244
DraI TTTAAA 2 cut(s) 336, 379
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 264, 434
EarI CTCTTC 2 cut(s) 264, 434
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 586
FaeI CATG 5 cut(s) 238, 439, 512, 710, 808
FatI CATG 5 cut(s) 234, 435, 508, 706, 804
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 3 cut(s) 251, 506, 673
Fsp4HI GCNGC 1 cut(s) 612
GluI GCNGC 1 cut(s) 612
HaeIII GGCC 2 cut(s) 324, 445
Hin1II CATG 5 cut(s) 238, 439, 512, 710, 808
HincII GTYRAC 2 cut(s) 181, 565
HindII GTYRAC 2 cut(s) 181, 565
HindIII AAGCTT 2 cut(s) 148, 739
HinfI GANTC 2 cut(s) 81, 131
HphI GGTGA 4 cut(s) 254, 314, 353, 371
Hpy166II GTNNAC 3 cut(s) 181, 565, 680
Hpy188I TCNGA 4 cut(s) 136, 319, 461, 727
Hpy188III TCNNGA 4 cut(s) 107, 161, 620, 765
Hpy8I GTNNAC 3 cut(s) 181, 565, 680
HpyAV CCTTC 2 cut(s) 335, 406
HpyCH4III ACNGT 3 cut(s) 704, 734, 787
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 4 cut(s) 497, 576, 611, 737
HpyF3I CTNAG 4 cut(s) 48, 248, 316, 726
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 5 cut(s) 238, 439, 512, 710, 808
Kzo9I GATC 2 cut(s) 157, 244
LmnI GCTCC 2 cut(s) 101, 664
LpnPI CCDG 6 cut(s) 146, 270, 270, 573, 600, 633
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 1 cut(s) 484
MaeII ACGT 1 cut(s) 567
MalI GATC 2 cut(s) 159, 246
MboI GATC 2 cut(s) 157, 244
MboII GAAGA 8 cut(s) 23, 43, 46, 218, 272, 281, 374, 451
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 98, 669
MluCI AATT 3 cut(s) 195, 475, 808
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 8 cut(s) 60, 208, 366, 387, 390, 435, 651, 763
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 5 cut(s) 152, 335, 378, 384, 811
MslI CAYNNNNRTG 1 cut(s) 705
MspR9I CCNGG 1 cut(s) 588
MvaI CCWGG 1 cut(s) 588
NdeII GATC 2 cut(s) 157, 244
NlaIII CATG 5 cut(s) 238, 439, 512, 710, 808
NspI RCATGY 1 cut(s) 512
PaeI GCATGC 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 81, 131
PkrI GCNGC 1 cut(s) 613
Psp1406I AACGTT 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 3 cut(s) 142, 219, 731
RsaNI GTAC 3 cut(s) 141, 218, 730
RseI CAYNNNNRTG 1 cut(s) 705
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 5 cut(s) 152, 335, 378, 384, 811
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 2 cut(s) 157, 244
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 2 cut(s) 98, 669
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
SphI GCATGC 1 cut(s) 512
Sse9I AATT 3 cut(s) 195, 475, 808
StyD4I CCNGG 1 cut(s) 586
TaaI ACNGT 3 cut(s) 704, 734, 787
TaiI ACGT 1 cut(s) 570
TaqI TCGA 1 cut(s) 180
TasI AATT 3 cut(s) 195, 475, 808
TatI WGTACW 2 cut(s) 140, 729
TfiI GAWTC 2 cut(s) 81, 131
Tru1I TTAA 5 cut(s) 152, 335, 378, 384, 811
Tru9I TTAA 5 cut(s) 152, 335, 378, 384, 811
TscAI CASTG 2 cut(s) 707, 739
TseI GCWGC 1 cut(s) 611
TspDTI ATGAA 6 cut(s) 33, 144, 207, 219, 317, 452
TspRI CASTG 2 cut(s) 707, 739
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.