pycom07g04940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000244
Physical Location & Seq
Forward (+)
4241572 .. 4242493
922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04940.2

Sequence Viewer

Length: 759 bp
ATGATGGGTAGAGAGGCCGATGAGGATGTTGGTGGTGTTGGTGATAGGTTCAAGGACGCCGAAGCACTCAATCGCTACAAGAAAAATTTCCGACTGTGTTTTCTGAGGACCGATTGGCAAGAGTACCTATTGAGCGATTTCGAGGATTTTGGGATTCCCTCTGTCTTCGAATCACACGGTTGGCTCTCCGTTGTAGGACGTGCAGAGCCTGCTAATATCCAGATTATTCAAGAATTCTACTCCAACATCCCTCCTCTTACTGCTGATCGGCCATTCCCCGACTCTTTCGATGTCTACCTACGCGGTAAGACCCTCAATTTCTCCGTAAAAAGCATTGCCCGGCTGCGTAAACTTCCAAGCCGGATGAACCTGGTTTCGATTATCATCAGCTTGTTAGCGCGCCTCCTTTATGCTATTGGGACCAATCTGCCAATTGATCTGCCCACCTACATTTTCCGTGTAAACTGCCAATCTGCAAGTTTTACCTATGGCGACTTGCCTTTCGGGTCCTTAATAACTCGGTTCGCTATGGATTCTCAGGTGCGAATTGATCCTACGGATAGGCTTCGATGTTCTTCTATACCAGCTCTGAAGTTGGATTGTATACCTTATGTTAAGAGACGTGTCCCGTCTTCTCCTGCATTTAGAGCACGCGCACCTGTGCCTCCTATTAACAACGTGATGCTTCATGGCAAGATAAGTGTACCATCTTCTCCTACAGTTAATCCAGCACCAACTGCTTCTGAACCAACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.26

Weight (kDa)

9.08

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 294, 604
AccII CGCG 3 cut(s) 303, 400, 654
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 85, 233
AcuI CTGAAG 1 cut(s) 611
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 125, 705
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 2 cut(s) 52, 230
AjiI CACGTC 2 cut(s) 200, 623
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 2 cut(s) 390, 587
AluI AGCT 2 cut(s) 390, 587
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 2 cut(s) 15, 269
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 85, 233
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 3 cut(s) 400, 402, 656
AspS9I GGNCC 3 cut(s) 108, 420, 507
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 3 cut(s) 108, 420, 507
BbsI GAAGAC 2 cut(s) 157, 624
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 715
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 613
BfmI CTRYAG 1 cut(s) 717
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 340, 371
Bme18I GGWCC 3 cut(s) 108, 420, 507
BmgBI CACGTC 2 cut(s) 200, 623
BmgT120I GGNCC 3 cut(s) 108, 420, 507
BmiI GGNNCC 2 cut(s) 421, 508
BmrFI CCNGG 2 cut(s) 340, 371
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 2 cut(s) 157, 624
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 1 cut(s) 371
BseGI GGATG 3 cut(s) 31, 246, 369
BseJI GATNNNNATC 1 cut(s) 383
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 95, 551
BsePI GCGCGC 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 3 cut(s) 303, 400, 654
BshFI GGCC 2 cut(s) 17, 271
BsiHKAI GWGCWC 1 cut(s) 652
BsiSI CCGG 2 cut(s) 340, 361
BslFI GGGAC 2 cut(s) 433, 611
BsmAI GTCTC 1 cut(s) 613
BsmBI CGTCTC 1 cut(s) 613
BsmFI GGGAC 2 cut(s) 433, 611
BsnI GGCC 2 cut(s) 17, 271
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 3 cut(s) 265, 436, 550
BspACI CCGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 17, 271
BspCNI CTCAG 2 cut(s) 96, 550
BspFNI CGCG 3 cut(s) 303, 400, 654
BspLI GGNNCC 2 cut(s) 421, 508
BspPI GGATC 1 cut(s) 545
BspT104I TTCGAA 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 333
BssHII GCGCGC 1 cut(s) 398
BssMI GATC 3 cut(s) 265, 436, 550
BssNAI GTATAC 1 cut(s) 605
BssNI GRCGYC 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 96, 179, 721
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 2 cut(s) 209, 737
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 210, 400, 652
BstDEI CTNAG 2 cut(s) 104, 537
BstF5I GGATG 3 cut(s) 31, 246, 369
BstFNI CGCG 3 cut(s) 303, 400, 654
BstHHI GCGC 3 cut(s) 400, 402, 656
BstKTI GATC 3 cut(s) 268, 439, 553
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 3 cut(s) 265, 436, 550
BstMWI GCNNNNNNNGC 3 cut(s) 209, 647, 737
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 338, 369
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 3 cut(s) 303, 400, 654
BstV1I GCAGC 1 cut(s) 330
BstV2I GAAGAC 2 cut(s) 157, 624
BstZ17I GTATAC 1 cut(s) 605
BsuRI GGCC 2 cut(s) 17, 271
BtrI CACGTC 2 cut(s) 200, 623
BtsCI GGATG 3 cut(s) 31, 246, 369
Cac8I GCNNGC 3 cut(s) 210, 400, 652
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 3 cut(s) 400, 402, 656
Cfr13I GGNCC 3 cut(s) 108, 420, 507
CseI GACGC 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 2 cut(s) 124, 704
CviAII CATG 1 cut(s) 689
CviJI RGCY 9 cut(s) 17, 184, 208, 271, 343, 360, 390, 565, 587
CviKI_1 RGCY 9 cut(s) 17, 184, 208, 271, 343, 360, 390, 565, 587
CviQI GTAC 2 cut(s) 124, 704
DdeI CTNAG 2 cut(s) 104, 537
DpnI GATC 3 cut(s) 267, 438, 552
DpnII GATC 3 cut(s) 265, 436, 550
EaeI YGGCCR 1 cut(s) 269
Eco47I GGWCC 3 cut(s) 108, 420, 507
Eco57I CTGAAG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 613
FaeI CATG 1 cut(s) 692
FaiI YATR 8 cut(s) 411, 489, 530, 581, 605, 612, 690, 757
FaqI GGGAC 2 cut(s) 433, 611
FatI CATG 1 cut(s) 688
FblI GTMKAC 2 cut(s) 294, 604
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 3 cut(s) 38, 233, 376
Fsp4HI GCNGC 1 cut(s) 344
GlaI GCGC 3 cut(s) 399, 401, 655
GluI GCNGC 1 cut(s) 344
HaeIII GGCC 2 cut(s) 17, 271
HapII CCGG 2 cut(s) 340, 361
HgaI GACGC 1 cut(s) 65
HhaI GCGC 3 cut(s) 400, 402, 656
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 692
Hin6I GCGC 3 cut(s) 398, 400, 654
HinP1I GCGC 3 cut(s) 398, 400, 654
HinfI GANTC 4 cut(s) 154, 170, 281, 533
HpaII CCGG 2 cut(s) 340, 361
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 5 cut(s) 295, 350, 463, 605, 704
Hpy188I TCNGA 4 cut(s) 92, 105, 591, 745
Hpy188III TCNNGA 2 cut(s) 220, 230
Hpy8I GTNNAC 5 cut(s) 295, 350, 463, 605, 704
HpyCH4III ACNGT 3 cut(s) 96, 179, 721
HpyCH4IV ACGT 3 cut(s) 199, 622, 678
HpyCH4V TGCA 3 cut(s) 203, 476, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 647, 737
HpyF3I CTNAG 2 cut(s) 104, 537
HpySE526I ACGT 3 cut(s) 199, 622, 678
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 692
HspAI GCGC 3 cut(s) 398, 400, 654
Kzo9I GATC 3 cut(s) 265, 436, 550
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 672
MabI ACCWGGT 1 cut(s) 369
MaeII ACGT 3 cut(s) 199, 622, 678
MalI GATC 3 cut(s) 267, 438, 552
MboI GATC 3 cut(s) 265, 436, 550
MboII GAAGA 4 cut(s) 157, 567, 624, 702
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 5 cut(s) 85, 233, 316, 432, 546
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 3 cut(s) 115, 267, 576
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 4 cut(s) 512, 615, 672, 723
MspI CCGG 2 cut(s) 340, 361
MspR9I CCNGG 2 cut(s) 340, 371
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 3 cut(s) 303, 400, 654
MwoI GCNNNNNNNGC 3 cut(s) 209, 647, 737
NciI CCSGG 1 cut(s) 340
NdeII GATC 3 cut(s) 265, 436, 550
NlaIII CATG 1 cut(s) 692
NlaIV GGNNCC 2 cut(s) 421, 508
NspV TTCGAA 1 cut(s) 168
PauI GCGCGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 154, 170, 533
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PpuMI RGGWCCY 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 421, 508
PspPI GGNCC 3 cut(s) 108, 420, 507
PspPPI RGGWCCY 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 209
PteI GCGCGC 1 cut(s) 398
RsaI GTAC 2 cut(s) 125, 705
RsaNI GTAC 2 cut(s) 124, 704
SaqAI TTAA 4 cut(s) 512, 615, 672, 723
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 3 cut(s) 265, 436, 550
Sau96I GGNCC 3 cut(s) 108, 420, 507
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 340, 371
SduI GDGCHC 1 cut(s) 652
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 672
SfcI CTRYAG 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 3 cut(s) 108, 420, 507
Sse9I AATT 5 cut(s) 85, 233, 316, 432, 546
SsiI CCGC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 338, 369
TaaI ACNGT 3 cut(s) 96, 179, 721
TaiI ACGT 3 cut(s) 202, 625, 681
TaqI TCGA 5 cut(s) 141, 168, 288, 377, 568
TaqII GACCGA 1 cut(s) 125
TasI AATT 5 cut(s) 85, 233, 316, 432, 546
TfiI GAWTC 3 cut(s) 154, 170, 533
Tru1I TTAA 4 cut(s) 512, 615, 672, 723
Tru9I TTAA 4 cut(s) 512, 615, 672, 723
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 380, 677
TspGWI ACGGA 4 cut(s) 178, 313, 446, 572
VpaK11BI GGWCC 3 cut(s) 108, 420, 507
XapI RAATTY 2 cut(s) 85, 233
XmiI GTMKAC 2 cut(s) 294, 604
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.