Rmu_sc0008148.1_g000034
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008148.1
OG0000244
Physical Location & Seq
Forward (+)
137141 .. 138029
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008148.1_g000034.1.cds

Sequence Viewer

Length: 801 bp
atgagtagacttggaggaaacgagctcaaaaaccaaaaaccaaatggaaagaatgaaggaaagagcaaaggaaaggctgatggcaagaactgtttgcagtggaatttagatatggagcgtgctttggctgatatacttcgtgaggaacgaggtctgggccataaaggagataatggttggaaagctgtagcttataatacagctgctgatattttatctgcactgtttgatattcaaatatctgctgacaatataaaaaaccatgtgaaatcatggaaaaagttctatggaattgttagtgatatcttgagccaaagtggatttagctgggattcctcaacacaaatgataagcattgaagaaaacagtgtatgggaagaatatgtgaagtctcatgatgaagctataagctttcagtttaaaagaatccgaaattgggatgatatagttgatttgtgtggcaaagatagagccactggagtgggtgctgaaacaggtttcgaagccactgaggttatgactcctcctgctaatgaagataatcatgtcgatttggaaggtgaccaagcatcagaagatattcacatcattgagaacatttcaccgaaccaagcaagttctcagaaaaagagaaatgaagcaacagtctcttctagtgtacctcctccaaagagaagagttacaactaaagatgtcttcggtacttctgtggatagaatggcttcatcttttgaagaactcattcgtgctactacaaaagtcttgtcccgaaagatgtatggacagaaatcatggcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

5.83

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 660, 703
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 236, 359, 734
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AleI CACNNNNGTG 1 cut(s) 479
AluBI AGCT 7 cut(s) 25, 185, 191, 203, 327, 404, 411
AluI AGCT 7 cut(s) 25, 185, 191, 203, 327, 404, 411
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 396, 652
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 749, 781
Asp700I GAANNNNTTC 4 cut(s) 281, 579, 721, 741
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 572, 594
AsuII TTCGAA 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 396, 652
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 501, 635
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 513, 654
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 396, 652
BsmFI GGGAC 1 cut(s) 751
BsnI GGCC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 27
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 502, 634
BspHI TCATGA 1 cut(s) 394
BspT104I TTCGAA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 481
Bst4CI ACNGT 4 cut(s) 92, 225, 368, 646
Bst6I CTCTTC 2 cut(s) 655, 670
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 510, 621
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 396, 652
BstPI GGTNACC 1 cut(s) 560
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 481
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 5 cut(s) 104, 221, 373, 474, 507
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 659, 702
CviAII CATG 5 cut(s) 263, 273, 395, 545, 792
CviQI GTAC 2 cut(s) 659, 702
DdeI CTNAG 2 cut(s) 510, 621
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 655, 670
EarI CTCTTC 2 cut(s) 655, 670
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 25
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 560
EcoRV GATATC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 5 cut(s) 266, 276, 398, 548, 795
FaqI GGGAC 1 cut(s) 751
FatI CATG 5 cut(s) 262, 272, 394, 544, 791
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 654
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 5 cut(s) 266, 276, 398, 548, 795
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 3 cut(s) 332, 426, 520
HphI GGTGA 2 cut(s) 572, 594
Hpy166II GTNNAC 2 cut(s) 8, 659
Hpy188I TCNGA 3 cut(s) 431, 574, 624
Hpy188III TCNNGA 4 cut(s) 140, 307, 395, 768
Hpy8I GTNNAC 2 cut(s) 8, 659
HpyAV CCTTC 2 cut(s) 50, 551
HpyCH4III ACNGT 4 cut(s) 92, 225, 368, 646
HpyCH4V TGCA 2 cut(s) 97, 221
HpyF3I CTNAG 2 cut(s) 510, 621
Hsp92II CATG 5 cut(s) 266, 276, 398, 548, 795
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 140, 313, 462, 480, 540
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 578
MaeI CTAG 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 560, 679
MboII GAAGA 8 cut(s) 371, 389, 548, 587, 642, 687, 688, 746
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 103, 291, 433
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 8 cut(s) 8, 136, 143, 346, 505, 534, 672, 675
MroXI GAANNNNTTC 4 cut(s) 281, 579, 721, 741
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 203
NlaIII CATG 5 cut(s) 266, 276, 398, 548, 795
NmuCI GTSAC 1 cut(s) 560
NspV TTCGAA 1 cut(s) 501
OliI CACNNNNGTG 1 cut(s) 479
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 4 cut(s) 281, 579, 721, 741
PfeI GAWTC 2 cut(s) 332, 426
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 660, 703
RsaNI GTAC 2 cut(s) 659, 702
RseI CAYNNNNRTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 514
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 578
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 3 cut(s) 103, 291, 433
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 4 cut(s) 92, 225, 368, 646
TaqI TCGA 2 cut(s) 501, 549
TasI AATT 3 cut(s) 103, 291, 433
TfiI GAWTC 2 cut(s) 332, 426
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 5 cut(s) 104, 228, 373, 481, 514
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 5 cut(s) 69, 414, 549, 651, 714
TspRI CASTG 5 cut(s) 104, 228, 373, 481, 514
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 4 cut(s) 281, 579, 721, 741
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.