Rw2G033470
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000244
Physical Location & Seq
Reverse (-)
54781841 .. 54782885
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033470.1

Sequence Viewer

Length: 948 bp
ATGAAAGGTAAGTCAGGGCCACATATCTCATGGAACAAAGAAATGGATGCTGCATTGGCTAAAGCGTTGATTGACCAAATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCATTCCAGCAGTTGTGCATGAGTTAAATATGACTTTAGATCTTGATTTGACAAAAGACAATGTGAAGAATAGACTTAAGGCTTGGAAGAGACATTATGCCATTATTTCTGATATCAAGAATCAAAGTCAGCTTATGTGGGGTGAAGGTAGGAAGATGGTTCTTATCAGATCAGAAAATCTGGAAGCTTGGAATTATTATGTTGAGTCACATCCTCTTGCACGTGGTTATCAAAACAAATTCATCGATAATTGGGATGACATTGCATTGCTATGTGGGAAGGATAAGACAACAGTTGAAGGTGCAGAGAATATTGAAGATGTTGAAGGAGCAATGGGAGTTGAAAAGGAAAATGGAGTCAATTTCATCTCTAATTCCCGTAGTCTTACACATCCTTCAGCTTCAACTTTGGAATCACATCCACTGACGAAGAAAGCCAAGAAACATTCGTGGAGGGTTGAAGAAGAAAATGAAGTCAATTCCATTTCTAATTCACATAGCTCAACACATCCTTCAGCATCAACTTCTAACTTGCATCTGAAGAAGAAGACAACGAAAGTGAAGAAAGATCTTTTGGCAGATGCAATTGGTGAGATGACGACTTCACTAAAGGAGTATTTGGCAAGCAAGATGGACCTGAATAGATCCCAACCCGAAGGTGAAGAAGTATATGAAGTGGTTTCAAAGGTACCAGGGCTCAATAGATTGCAGGTTTTTAAGGCTATACGAGTATTACTGAATGGTAACCCAGAGGAATTCTTTCTATTGAAATATCTTCCTGATGCTGAGAAGACAGAGTGGATACCATATCTTATTAGTCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

315

Amino Acids

35.65

Weight (kDa)

7.81

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 10 - 97 1.2e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 820
Acc65I GGTACC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 808
AclWI GGATC 1 cut(s) 759
AcsI RAATTY 2 cut(s) 359, 875
AcuI CTGAAG 3 cut(s) 501, 618, 680
AcvI CACGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 810
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 8 cut(s) 419, 437, 446, 464, 525, 581, 804, 889
AjnI CCWGG 1 cut(s) 811
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AluBI AGCT 4 cut(s) 253, 308, 521, 621
AluI AGCT 4 cut(s) 253, 308, 521, 621
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 759
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 359, 875
Asp700I GAANNNNTTC 1 cut(s) 879
Asp718I GGTACC 1 cut(s) 808
AspS9I GGNCC 2 cut(s) 17, 754
AsuHPI GGTGA 3 cut(s) 275, 722, 791
AvaII GGWCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 819
BbrPI CACGTG 1 cut(s) 344
BbsI GAAGAC 2 cut(s) 674, 917
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 271, 745
BciT130I CCWGG 1 cut(s) 813
BciVI GTATCC 1 cut(s) 915
BcoDI GTCTC 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 1 cut(s) 915
BglII AGATCT 2 cut(s) 160, 688
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 813
Bme18I GGWCC 1 cut(s) 754
BmgT120I GGNCC 2 cut(s) 17, 754
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 1 cut(s) 813
BmsI GCATC 5 cut(s) 37, 647, 664, 691, 892
BpiI GAAGAC 2 cut(s) 674, 917
Bsa29I ATCGAT 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 812
Bse3DI GCAATG 3 cut(s) 381, 386, 459
BseBI CCWGG 1 cut(s) 813
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 6 cut(s) 52, 331, 382, 511, 538, 628
BseMI GCAATG 3 cut(s) 381, 386, 459
BseMII CTCAG 1 cut(s) 897
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 808
BshVI ATCGAT 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 819
Bsp143I GATC 4 cut(s) 160, 290, 688, 764
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 898
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 810
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 808
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 3 cut(s) 381, 386, 459
BssECI CCNNGG 1 cut(s) 812
BssMI GATC 4 cut(s) 160, 290, 688, 764
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 2 cut(s) 108, 415
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 745
BstDEI CTNAG 1 cut(s) 906
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 6 cut(s) 52, 331, 382, 511, 538, 628
BstKTI GATC 4 cut(s) 163, 293, 691, 767
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 4 cut(s) 160, 290, 688, 764
BstMWI GCNNNNNNNGC 2 cut(s) 56, 128
BstNI CCWGG 1 cut(s) 813
BstNSI RCATGY 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 811
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 674, 917
BstX2I RGATCY 3 cut(s) 160, 688, 764
BstYI RGATCY 3 cut(s) 160, 688, 764
Bsu15I ATCGAT 1 cut(s) 366
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 366
BtsCI GGATG 6 cut(s) 52, 331, 382, 511, 538, 628
BtsIMutI CAGTG 2 cut(s) 113, 542
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 17, 754
ClaI ATCGAT 1 cut(s) 366
Csp6I GTAC 1 cut(s) 809
CviAII CATG 3 cut(s) 30, 119, 140
CviQI GTAC 1 cut(s) 809
DdeI CTNAG 1 cut(s) 906
DpnI GATC 4 cut(s) 162, 292, 690, 766
DpnII GATC 4 cut(s) 160, 290, 688, 764
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 754
Eco57I CTGAAG 3 cut(s) 501, 618, 680
Eco72I CACGTG 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 863
EcoO65I GGTNACC 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 811
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 819
FaeI CATG 3 cut(s) 33, 122, 143
FatI CATG 3 cut(s) 29, 118, 139
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 6 cut(s) 59, 318, 389, 498, 525, 615
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 3 cut(s) 33, 122, 143
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 4 cut(s) 241, 326, 477, 533
HphI GGTGA 3 cut(s) 275, 722, 791
Hpy166II GTNNAC 2 cut(s) 104, 111
Hpy188I TCNGA 4 cut(s) 232, 290, 295, 660
Hpy188III TCNNGA 4 cut(s) 164, 238, 302, 899
Hpy8I GTNNAC 2 cut(s) 104, 111
HpyAV CCTTC 7 cut(s) 260, 394, 413, 440, 525, 642, 770
HpyCH4III ACNGT 2 cut(s) 108, 415
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 8 cut(s) 53, 139, 341, 386, 425, 655, 704, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 128
HpyF3I CTNAG 1 cut(s) 906
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 3 cut(s) 33, 122, 143
KpnI GGTACC 1 cut(s) 812
Kzo9I GATC 4 cut(s) 160, 290, 688, 764
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 8 cut(s) 141, 287, 770, 798, 815, 825, 882, 912
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 5 cut(s) 37, 647, 664, 691, 892
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 327, 863
MalI GATC 4 cut(s) 162, 292, 690, 766
MboI GATC 4 cut(s) 160, 290, 688, 764
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 3 cut(s) 160, 688, 764
MhlI GDGCHC 1 cut(s) 819
MluCI AATT 9 cut(s) 313, 359, 370, 481, 493, 598, 610, 705, 875
MlyI GAGTC 2 cut(s) 335, 486
MnlI CCTC 3 cut(s) 345, 567, 865
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 4 cut(s) 146, 198, 837, 946
MslI CAYNNNNRTG 1 cut(s) 391
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 813
MunI CAATTG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 813
MwoI GCNNNNNNNGC 2 cut(s) 56, 128
NdeII GATC 4 cut(s) 160, 290, 688, 764
NlaIII CATG 3 cut(s) 33, 122, 143
NlaIV GGNNCC 1 cut(s) 810
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 2 cut(s) 241, 533
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 2 cut(s) 334, 485
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
PpsI GAGTC 2 cut(s) 334, 485
Ppu21I YACGTR 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 811
PspCI CACGTG 1 cut(s) 344
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 1 cut(s) 811
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 2 cut(s) 17, 754
PsuI RGATCY 3 cut(s) 160, 688, 764
RsaI GTAC 1 cut(s) 810
RsaNI GTAC 1 cut(s) 809
RseI CAYNNNNRTG 1 cut(s) 391
SaqAI TTAA 4 cut(s) 146, 198, 837, 946
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 4 cut(s) 160, 290, 688, 764
Sau96I GGNCC 2 cut(s) 17, 754
SchI GAGTC 2 cut(s) 335, 486
ScrFI CCNGG 1 cut(s) 813
SduI GDGCHC 1 cut(s) 819
SfaNI GCATC 5 cut(s) 37, 647, 664, 691, 892
SinI GGWCC 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 9 cut(s) 313, 359, 370, 481, 493, 598, 610, 705, 875
SspI AATATT 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 811
TaaI ACNGT 2 cut(s) 108, 415
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 366
TasI AATT 9 cut(s) 313, 359, 370, 481, 493, 598, 610, 705, 875
TfiI GAWTC 2 cut(s) 241, 533
Tru1I TTAA 4 cut(s) 146, 198, 837, 946
Tru9I TTAA 4 cut(s) 146, 198, 837, 946
TscAI CASTG 2 cut(s) 113, 549
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 6 cut(s) 17, 95, 352, 475, 606, 807
TspRI CASTG 2 cut(s) 113, 549
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 754
XapI RAATTY 2 cut(s) 359, 875
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.