Rh2BG419500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000244
Physical Location & Seq
Forward (+)
59108882 .. 59110090
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG419500.1

Sequence Viewer

Length: 1056 bp
ATGCATTTGACTGGTCTGTCTTCCAACGCTTTGTCTCATGTGCATTGTAGTTTAGCTGCAATTTATACTGTGTGGTATATATTGTCGTTATTGAATGCAAGTATGAGAAGACCTGAAAAACGGCGGTTGTCTCTAGCCCAAATTACTTCTCGATCACAATCTCAGATGAAAGGTAAGTCAGGGCCACATATCTCATGGAACAAAGAAATGGATGCTGCATTGGCTAAAGCGTTGATTGACCAAATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCATTCCAGCAGTTGTGCATGAGTTAAATATGACTCTAGATCTTGATTTGACAAAAGACAATGTGAAGAATAGACTTAAGGCTTGGAAGAGACATTATGCCATTATTTCTGATATCAAGAATCAAAGTCAGCTTATGTGGGGTGAAGGTAGGAAGATGGTTCTTATCAGATCAGAAAATCTGGAAGCTTGGAATTATTATGTTGAGTACATCCTCTTGCACGTGGATAAGACAACAGTTGAAGGTGCAGAGAATATTGAAGATGTTGAAGGAGCAATGGGAGTTGAAAAGGAAAATGGAGTCAATTTCATCTCTAATTCCCGTAGTCTTACACATCCTTCAGCTTCAACTTTGGAATCACATCCACTGACGAAGAAAGCCAAGAAACATTCGTGGAGGGTTGAAGAAGAAAATGAAGTCAATTCCATTTCTAATTCACATAGCTCAACACATCCTTCAGCATCAACTTCTAACTTGCATCTGAAGAAGAAGACAACGAAAGTGAAGAAAGATCTTTTGGCAGATGCAATTGGTGAGATGACGACTTCACTAAAGGAGTATTTGGCAAGCAAGATGGACCTGAATAGATCCCAACCCAAAGGTGAAGAAGTATATGAAGTGGTTTCAAAGGTACCAGGGCTCAATAGATTGCAGGTTTTTAAGGCTATACGAGTATTACTGAATGGTAACCCAGAAGAATTCTTTCTATTGAAATATCTTCCTGATGCTGAGAAGACAGAGTGGATACCATATCTTATTAGTCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

351

Amino Acids

39.71

Weight (kDa)

9.25

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 65 - 152 1.4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 928
Acc65I GGTACC 1 cut(s) 916
AccB1I GGYRCC 1 cut(s) 916
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 867
AcsI RAATTY 1 cut(s) 983
AcuI CTGAAG 3 cut(s) 609, 726, 788
AcvI CACGTG 1 cut(s) 508
AfaI GTAC 2 cut(s) 494, 918
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 9 cut(s) 94, 527, 545, 554, 572, 633, 689, 912, 997
AjnI CCWGG 1 cut(s) 919
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 5 cut(s) 56, 418, 473, 629, 729
AluI AGCT 5 cut(s) 56, 418, 473, 629, 729
Alw26I GTCTC 3 cut(s) 39, 135, 370
AlwI GGATC 1 cut(s) 867
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 56, 215
ApoI RAATTY 1 cut(s) 983
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 916
AspS9I GGNCC 2 cut(s) 182, 862
AsuHPI GGTGA 3 cut(s) 440, 830, 899
AvaII GGWCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 916
BanII GRGCYC 1 cut(s) 927
BbrPI CACGTG 1 cut(s) 508
BbsI GAAGAC 4 cut(s) 12, 115, 782, 1025
BbvI GCAGC 2 cut(s) 43, 202
BccI CCATC 2 cut(s) 436, 853
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 921
BciVI GTATCC 1 cut(s) 1023
BcoDI GTCTC 3 cut(s) 39, 135, 370
BfaI CTAG 2 cut(s) 134, 323
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 928
BfuI GTATCC 1 cut(s) 1023
BglII AGATCT 2 cut(s) 325, 796
BisI GCNGC 2 cut(s) 57, 216
BlsI GCNGC 2 cut(s) 58, 217
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 182, 862
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 1 cut(s) 921
BmsI GCATC 5 cut(s) 202, 755, 772, 799, 1000
BpiI GAAGAC 4 cut(s) 12, 115, 782, 1025
BsaAI YACGTR 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 920
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 157
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 920
BseGI GGATG 5 cut(s) 217, 495, 619, 646, 736
BseJI GATNNNNATC 1 cut(s) 157
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 2 cut(s) 176, 1005
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 43, 202
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 916
BsmAI GTCTC 3 cut(s) 39, 135, 370
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 927
Bsp143I GATC 5 cut(s) 152, 325, 455, 796, 872
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 2 cut(s) 175, 1006
BspLI GGNNCC 1 cut(s) 918
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 916
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 920
BssMI GATC 5 cut(s) 152, 325, 455, 796, 872
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 70, 273, 523
Bst6I CTCTTC 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 853
BstDEI CTNAG 2 cut(s) 162, 1014
BstEII GGTNACC 1 cut(s) 971
BstF5I GGATG 5 cut(s) 217, 495, 619, 646, 736
BstKTI GATC 5 cut(s) 155, 328, 458, 799, 875
BstMAI GTCTC 3 cut(s) 39, 135, 370
BstMBI GATC 5 cut(s) 152, 325, 455, 796, 872
BstMWI GCNNNNNNNGC 2 cut(s) 221, 293
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 971
BstSCI CCNGG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 43, 202
BstV2I GAAGAC 4 cut(s) 12, 115, 782, 1025
BstX2I RGATCY 3 cut(s) 325, 796, 872
BstYI RGATCY 3 cut(s) 325, 796, 872
BsuI GTATCC 1 cut(s) 1023
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 5 cut(s) 217, 495, 619, 646, 736
BtsIMutI CAGTG 2 cut(s) 278, 650
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 1 cut(s) 853
Cfr13I GGNCC 2 cut(s) 182, 862
Csp6I GTAC 2 cut(s) 493, 917
CviAII CATG 4 cut(s) 38, 195, 284, 305
CviQI GTAC 2 cut(s) 493, 917
DdeI CTNAG 2 cut(s) 162, 1014
DpnI GATC 5 cut(s) 154, 327, 457, 798, 874
DpnII GATC 5 cut(s) 152, 325, 455, 796, 872
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 927
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 3 cut(s) 609, 726, 788
Eco72I CACGTG 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 971
EcoO65I GGTNACC 1 cut(s) 971
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 919
EcoRV GATATC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 927
FaeI CATG 4 cut(s) 41, 198, 287, 308
FatI CATG 4 cut(s) 37, 194, 283, 304
Fnu4HI GCNGC 2 cut(s) 57, 216
FokI GGATG 5 cut(s) 224, 482, 606, 633, 723
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 2 cut(s) 57, 216
FspBI CTAG 2 cut(s) 134, 323
GluI GCNGC 2 cut(s) 57, 216
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 4 cut(s) 41, 198, 287, 308
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 4 cut(s) 319, 406, 585, 641
HphI GGTGA 3 cut(s) 440, 830, 899
Hpy166II GTNNAC 2 cut(s) 269, 276
Hpy188I TCNGA 5 cut(s) 165, 397, 455, 460, 768
Hpy188III TCNNGA 6 cut(s) 150, 323, 329, 403, 467, 1007
Hpy8I GTNNAC 2 cut(s) 269, 276
HpyAV CCTTC 5 cut(s) 425, 521, 548, 633, 750
HpyCH4III ACNGT 3 cut(s) 70, 273, 523
HpyCH4IV ACGT 1 cut(s) 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 293
HpyF3I CTNAG 2 cut(s) 162, 1014
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 4 cut(s) 41, 198, 287, 308
KpnI GGTACC 1 cut(s) 920
Kzo9I GATC 5 cut(s) 152, 325, 455, 796, 872
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 2 cut(s) 43, 202
LweI GCATC 5 cut(s) 202, 755, 772, 799, 1000
MaeI CTAG 2 cut(s) 134, 323
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 971
MalI GATC 5 cut(s) 154, 327, 457, 798, 874
MboI GATC 5 cut(s) 152, 325, 455, 796, 872
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 3 cut(s) 325, 796, 872
MhlI GDGCHC 1 cut(s) 927
MluCI AATT 9 cut(s) 60, 141, 478, 589, 601, 706, 718, 813, 983
MlyI GAGTC 2 cut(s) 313, 594
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 509, 675
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 4 cut(s) 311, 363, 945, 1054
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 921
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 2 cut(s) 221, 293
NdeII GATC 5 cut(s) 152, 325, 455, 796, 872
NlaIII CATG 4 cut(s) 41, 198, 287, 308
NlaIV GGNNCC 1 cut(s) 918
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 287
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 2 cut(s) 406, 641
PkrI GCNGC 2 cut(s) 58, 217
PleI GAGTC 2 cut(s) 313, 593
PmaCI CACGTG 1 cut(s) 508
PmlI CACGTG 1 cut(s) 508
PpsI GAGTC 2 cut(s) 313, 593
Ppu21I YACGTR 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 919
PspCI CACGTG 1 cut(s) 508
PspEI GGTNACC 1 cut(s) 971
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 2 cut(s) 182, 862
PsuI RGATCY 3 cut(s) 325, 796, 872
RsaI GTAC 2 cut(s) 494, 918
RsaNI GTAC 2 cut(s) 493, 917
SaqAI TTAA 4 cut(s) 311, 363, 945, 1054
SatI GCNGC 2 cut(s) 57, 216
Sau3AI GATC 5 cut(s) 152, 325, 455, 796, 872
Sau96I GGNCC 2 cut(s) 182, 862
SchI GAGTC 2 cut(s) 313, 594
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 5 cut(s) 202, 755, 772, 799, 1000
SinI GGWCC 1 cut(s) 862
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 9 cut(s) 60, 141, 478, 589, 601, 706, 718, 813, 983
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 134, 323
StyD4I CCNGG 1 cut(s) 919
TaaI ACNGT 3 cut(s) 70, 273, 523
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 151
TasI AATT 9 cut(s) 60, 141, 478, 589, 601, 706, 718, 813, 983
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 2 cut(s) 406, 641
Tru1I TTAA 4 cut(s) 311, 363, 945, 1054
Tru9I TTAA 4 cut(s) 311, 363, 945, 1054
TscAI CASTG 2 cut(s) 278, 657
TseI GCWGC 2 cut(s) 56, 215
TspDTI ATGAA 5 cut(s) 182, 260, 583, 714, 915
TspRI CASTG 2 cut(s) 278, 657
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 1 cut(s) 983
XbaI TCTAGA 1 cut(s) 322
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 2 cut(s) 134, 323
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.