Rh6CG021500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000244
Physical Location & Seq
Reverse (-)
1983969 .. 1985226
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG021500.1

Sequence Viewer

Length: 660 bp
ATGAGCGGGACTCTGAGAAGTGGAGATGGTTTCAGGAGACATTATGCTATTATCACCGACATCAAAAGTCAAAGCGGACTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAACTGGGATGATATCGCTATGCTATGTGGGAAAGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAAATCACATGCCACACATGCAACAACTTCGACTTGTGAATCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAACCTCAGCAAATTGCAAGTTTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTACTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGGCAACCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

5.01

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 75
AclWI GGATC 2 cut(s) 386, 399
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 132, 284, 569
AcuI CTGAAG 3 cut(s) 291, 602, 660
AfaI GTAC 2 cut(s) 483, 540
AgsI TTSAA 3 cut(s) 290, 433, 532
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 236, 449, 536
AluI AGCT 3 cut(s) 236, 449, 536
Alw26I GTCTC 3 cut(s) 31, 460, 591
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 3 cut(s) 132, 284, 569
AsuHPI GGTGA 3 cut(s) 46, 254, 425
BalI TGGCCA 1 cut(s) 422
BamHI GGATCC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 458
BccI CCATC 2 cut(s) 20, 97
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 31, 460, 591
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 108, 393
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 256, 586
BmuI ACTGGG 1 cut(s) 208
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bse1I ACTGG 2 cut(s) 203, 244
BseBI CCWGG 1 cut(s) 128
BseGI GGATG 5 cut(s) 94, 157, 208, 364, 484
BseMII CTCAG 2 cut(s) 5, 526
BseNI ACTGG 2 cut(s) 203, 244
BseXI GCAGC 1 cut(s) 458
BshFI GGCC 1 cut(s) 422
BslFI GGGAC 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 31, 460, 591
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 2 cut(s) 145, 627
BsnI GGCC 1 cut(s) 422
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 2 cut(s) 6, 75
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 6, 525
BspLI GGNNCC 2 cut(s) 108, 393
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 2 cut(s) 386, 399
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 2 cut(s) 203, 244
BssMI GATC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 14, 512
BstEII GGTNACC 1 cut(s) 557
BstF5I GGATG 5 cut(s) 94, 157, 208, 364, 484
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 3 cut(s) 31, 460, 591
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 338, 631
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 2 cut(s) 332, 341
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 5 cut(s) 94, 157, 208, 364, 484
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Csp6I GTAC 2 cut(s) 482, 539
CviAII CATG 3 cut(s) 329, 338, 485
CviJI RGCY 4 cut(s) 236, 422, 449, 536
CviKI_1 RGCY 4 cut(s) 236, 422, 449, 536
CviQI GTAC 2 cut(s) 482, 539
DdeI CTNAG 2 cut(s) 14, 512
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco32I GATATC 2 cut(s) 176, 208
Eco57I CTGAAG 3 cut(s) 291, 602, 660
Eco91I GGTNACC 1 cut(s) 557
EcoO65I GGTNACC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 2 cut(s) 176, 208
FaeI CATG 3 cut(s) 332, 341, 488
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 328, 337, 484
FauNDI CATATG 1 cut(s) 629
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 5 cut(s) 101, 144, 215, 351, 491
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 1 cut(s) 422
Hin1II CATG 3 cut(s) 332, 341, 488
HinfI GANTC 4 cut(s) 10, 152, 316, 359
HphI GGTGA 3 cut(s) 46, 254, 425
Hpy188I TCNGA 2 cut(s) 15, 640
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 239, 635
HpyCH4V TGCA 3 cut(s) 119, 341, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 631
HpyF3I CTNAG 2 cut(s) 14, 512
Hsp92II CATG 3 cut(s) 332, 341, 488
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 19, 113, 140, 184, 225
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 2 cut(s) 256, 586
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 3 cut(s) 153, 313, 557
MalI GATC 1 cut(s) 393
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 391
MboII GAAGA 6 cut(s) 104, 266, 284, 308, 311, 578
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 391
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 6 cut(s) 132, 284, 408, 518, 569, 655
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 3 cut(s) 4, 161, 310
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 378, 469, 521
Mox20I TGGCCA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 422
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 162, 548
Msp20I TGGCCA 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 2 cut(s) 145, 627
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 338, 631
NdeI CATATG 1 cut(s) 629
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 332, 341, 488
NlaIV GGNNCC 2 cut(s) 108, 393
NmuCI GTSAC 2 cut(s) 153, 313
NspI RCATGY 2 cut(s) 332, 341
PctI GAATGC 2 cut(s) 145, 627
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 3 cut(s) 4, 160, 310
PpsI GAGTC 3 cut(s) 4, 160, 310
Psp6I CCWGG 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 108, 393
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 483, 540
RsaNI GTAC 2 cut(s) 482, 539
RseI CAYNNNNRTG 2 cut(s) 162, 548
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 1 cut(s) 391
SchI GAGTC 3 cut(s) 4, 161, 310
ScrFI CCNGG 1 cut(s) 128
SetI ASST 6 cut(s) 129, 238, 431, 451, 513, 538
SfaNI GCATC 2 cut(s) 256, 586
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 162, 548
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
Sse9I AATT 6 cut(s) 132, 284, 408, 518, 569, 655
SsiI CCGC 2 cut(s) 6, 75
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 350
TasI AATT 6 cut(s) 132, 284, 408, 518, 569, 655
TatI WGTACW 1 cut(s) 481
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 153, 313
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 153, 313
TspDTI ATGAA 3 cut(s) 105, 318, 501
TspRI CASTG 1 cut(s) 121
XapI RAATTY 3 cut(s) 132, 284, 569
XceI RCATGY 2 cut(s) 332, 341
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.