Rh2AG397400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000244
Physical Location & Seq
Forward (+)
59408414 .. 59408790
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG397400.1

Sequence Viewer

Length: 270 bp
ATGACTTTAGATCTTGGTTTGACAAAAGACAATGTGAAGAATAGACTTAAGGCTTGGAAGAGACATTATGCCATTATTTCTGATATCAAGAATCAAAGTCAGCTTATGTGGGATGAAGGTAGGAAGATGGTTGTTATCAGATCAGAAAATCTGGAAGCTTGGAATGATTATGTTGAGTCACATCCTCTTGCACGTGGTTATCAAAACAAATTCATCGATAATTGGGATGACATTGCATTGCTATGCGGGAAGGATAAGACAACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

89

Amino Acids

10.47

Weight (kDa)

7.85

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 5 - 57 3.9e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 209
AcvI CACGTG 1 cut(s) 194
AflII CTTAAG 1 cut(s) 47
AluBI AGCT 2 cut(s) 103, 158
AluI AGCT 2 cut(s) 103, 158
Alw26I GTCTC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 194
BccI CCATC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 231, 236
BseCI ATCGAT 1 cut(s) 216
BseGI GGATG 3 cut(s) 118, 181, 232
BseMI GCAATG 2 cut(s) 231, 236
BshVI ATCGAT 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 10, 140
BspACI CCGC 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 231, 236
BssMI GATC 2 cut(s) 10, 140
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 194
BstF5I GGATG 3 cut(s) 118, 181, 232
BstKTI GATC 2 cut(s) 13, 143
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 10, 140
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 3 cut(s) 118, 181, 232
ClaI ATCGAT 1 cut(s) 216
CviJI RGCY 3 cut(s) 53, 103, 158
CviKI_1 RGCY 3 cut(s) 53, 103, 158
DpnI GATC 2 cut(s) 12, 142
DpnII GATC 2 cut(s) 10, 140
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 85
Eco72I CACGTG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 85
FaiI YATR 4 cut(s) 69, 107, 171, 244
FauI CCCGC 1 cut(s) 239
FokI GGATG 3 cut(s) 125, 168, 239
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 2 cut(s) 91, 176
Hpy188I TCNGA 3 cut(s) 82, 140, 145
Hpy188III TCNNGA 2 cut(s) 88, 152
HpyAV CCTTC 2 cut(s) 110, 244
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 191, 236
HpySE526I ACGT 1 cut(s) 193
Kzo9I GATC 2 cut(s) 10, 140
LpnPI CCDG 1 cut(s) 137
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 177
MalI GATC 2 cut(s) 12, 142
MboI GATC 2 cut(s) 10, 140
MboII GAAGA 3 cut(s) 49, 70, 136
MflI RGATCY 1 cut(s) 10
MluCI AATT 2 cut(s) 209, 220
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 1 cut(s) 195
MseI TTAA 2 cut(s) 48, 268
MslI CAYNNNNRTG 1 cut(s) 241
MspCI CTTAAG 1 cut(s) 47
NdeII GATC 2 cut(s) 10, 140
NmuCI GTSAC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 48, 268
Sau3AI GATC 2 cut(s) 10, 140
SchI GAGTC 1 cut(s) 185
SetI ASST 4 cut(s) 105, 121, 160, 196
SgeI CNNG 9 cut(s) 26, 66, 100, 164, 171, 200, 204, 206, 259
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 209, 220
SsiI CCGC 1 cut(s) 246
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 209, 220
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 48, 268
Tru9I TTAA 2 cut(s) 48, 268
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 129, 202
Vha464I CTTAAG 1 cut(s) 47
XapI RAATTY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.