RLG00000009166
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
47973069 .. 47974441
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009166

Sequence Viewer

Length: 390 bp
ATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGTGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGATGTACACATATTGATGAGTGGTAACCCCAAAGAATTTTCTCTGTTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATCTGAAGGCATATTAGTTATGCTATTGATAGAAACAAGACAGAAACAGAGGAATGCTTGCACATGGAGGCATCAGGGCAGTGCCGATCTCAAGCAGGGTGGTTGCTTGGCGGTTCTGACTGCTGGGTCTCTATCGTTGGGCCAAAATATTAAGTTTTCTTACTGGTGGAATGATGAAGCTGCACGGTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

8.84

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AciI CCGC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 2 cut(s) 42, 99
AgsI TTSAA 2 cut(s) 91, 142
AluBI AGCT 2 cut(s) 8, 374
AluI AGCT 2 cut(s) 8, 374
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 3 cut(s) 19, 150, 327
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 5, 374
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 17, 361
BcoDI GTCTC 3 cut(s) 19, 150, 327
BisI GCNGC 2 cut(s) 6, 375
BlsI GCNGC 2 cut(s) 7, 376
BmgT120I GGNCC 1 cut(s) 334
BmsI GCATC 2 cut(s) 145, 274
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse1I ACTGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 2 cut(s) 17, 361
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 19, 150, 327
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 386
Bsp1407I TGTACA 2 cut(s) 40, 97
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 327
BsrGI TGTACA 2 cut(s) 40, 97
BsrI ACTGG 1 cut(s) 362
BssMI GATC 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 381
BstAUI TGTACA 2 cut(s) 40, 97
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 71, 387
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 19, 150, 327
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 17, 361
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 41, 98
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 2 cut(s) 44, 258
CviJI RGCY 3 cut(s) 8, 336, 374
CviKI_1 RGCY 3 cut(s) 8, 336, 374
CviQI GTAC 2 cut(s) 41, 98
DdeI CTNAG 2 cut(s) 71, 387
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
FaeI CATG 2 cut(s) 47, 261
FaiI YATR 7 cut(s) 45, 104, 188, 190, 206, 215, 259
FatI CATG 2 cut(s) 43, 257
FauNDI CATATG 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 6, 375
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 6, 375
GluI GCNGC 2 cut(s) 6, 375
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 2 cut(s) 47, 261
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 199, 312
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 82, 255, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 71, 387
Hsp92II CATG 2 cut(s) 47, 261
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 254, 275, 303, 343
Lsp1109I GCAGC 2 cut(s) 17, 361
LweI GCATC 2 cut(s) 145, 274
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 77, 128
MnlI CCTC 2 cut(s) 237, 255
MseI TTAA 2 cut(s) 150, 345
MslI CAYNNNNRTG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeI CATATG 1 cut(s) 188
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 47, 261
PctI GAATGC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 7, 376
PspEI GGTNACC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 2 cut(s) 42, 99
RsaNI GTAC 2 cut(s) 41, 98
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 150, 345
SatI GCNGC 2 cut(s) 6, 375
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 386
SetI ASST 2 cut(s) 10, 376
SfaNI GCATC 2 cut(s) 145, 274
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 9, 284
SmoI CTYRAG 2 cut(s) 9, 284
Sse9I AATT 2 cut(s) 77, 128
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 343
TaaI ACNGT 1 cut(s) 381
TasI AATT 2 cut(s) 77, 128
TatI WGTACW 2 cut(s) 40, 97
Tru1I TTAA 2 cut(s) 150, 345
Tru9I TTAA 2 cut(s) 150, 345
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 5, 374
TspDTI ATGAA 2 cut(s) 60, 384
TspRI CASTG 1 cut(s) 280
XapI RAATTY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.