Rmu_sc0000945.1_g000025
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000945.1
OG0000244
Physical Location & Seq
Reverse (-)
103761 .. 104369
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000945.1_g000025.1.cds

Sequence Viewer

Length: 609 bp
atgtttcaactattggatctgcacatatgtttctccacaagttttggagatgctaaagaagcagaggaatttgaaggagcagaaggagcagaagatgttggagatgctaaagaaactatggaatttgaggcagaagatgttggagatgctaaagaaactatggaatttgaagcagaagaaaatgaaagtcatgtgactcccaattcatatgcctcaacacatgcagcaacttcaacttgtgattcacatcctccaaataagaaaaagaaaaaggatccactagcacaagcaactggagatgtggccaacaccttgaaggaatttatggcagctcatgtctccccacaactcaaaggagaggatgtacatgaagtggtttctaaagtagcaaatctcagcaaattgcaagttttcaaagctgtatgcatattgatgagtggtaaccccaaagaattttctctattgaaatctcttaatgatgctgaaaagagtgagtggataaaaatgctcatatggcaatctgaaggtatgcttgttcccacttctctcatggttcaactattggatctgcacatatgtttctccacaagttttgagtattctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

202

Amino Acids

22.27

Weight (kDa)

4.62

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 24, 269, 282, 573
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 5 cut(s) 68, 122, 164, 320, 452
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 1 cut(s) 366
AgsI TTSAA 8 cut(s) 8, 74, 170, 234, 316, 415, 466, 557
AluBI AGCT 3 cut(s) 332, 419, 606
AluI AGCT 3 cut(s) 332, 419, 606
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 4 cut(s) 24, 269, 282, 573
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 224, 329
ApoI RAATTY 5 cut(s) 68, 122, 164, 320, 452
BalI TGGCCA 1 cut(s) 305
BamHI GGATCC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 236, 341
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 3 cut(s) 281, 603, 607
BisI GCNGC 2 cut(s) 225, 330
BlsI GCNGC 2 cut(s) 226, 331
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 4 cut(s) 40, 94, 136, 469
BpmI CTGGAG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 246
BseGI GGATG 2 cut(s) 247, 367
BseJI GATNNNNATC 1 cut(s) 246
BseMII CTCAG 1 cut(s) 409
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 236, 341
BsgI GTGCAG 2 cut(s) 5, 554
BshFI GGCC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 1 cut(s) 305
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 3 cut(s) 16, 274, 565
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 4 cut(s) 24, 269, 282, 573
BsrGI TGTACA 1 cut(s) 364
BsrI ACTGG 1 cut(s) 298
BssMI GATC 3 cut(s) 16, 274, 565
BstAUI TGTACA 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 395
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 247, 367
BstKTI GATC 3 cut(s) 19, 277, 568
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 3 cut(s) 16, 274, 565
BstMWI GCNNNNNNNGC 3 cut(s) 59, 86, 514
BstNSI RCATGY 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 236, 341
BstX2I RGATCY 3 cut(s) 16, 274, 565
BstYI RGATCY 3 cut(s) 16, 274, 565
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 247, 367
Csp6I GTAC 1 cut(s) 365
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 574, 609
CviAII CATG 5 cut(s) 191, 221, 335, 368, 550
CviJI RGCY 4 cut(s) 305, 332, 419, 606
CviKI_1 RGCY 4 cut(s) 305, 332, 419, 606
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 18, 276, 567
DpnII GATC 3 cut(s) 16, 274, 565
EaeI YGGCCR 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 428
FaeI CATG 5 cut(s) 194, 224, 338, 371, 553
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 5 cut(s) 190, 220, 334, 367, 549
FauNDI CATATG 4 cut(s) 26, 208, 512, 575
Fnu4HI GCNGC 2 cut(s) 225, 330
FokI GGATG 2 cut(s) 234, 374
Fsp4HI GCNGC 2 cut(s) 225, 330
FspBI CTAG 3 cut(s) 281, 603, 607
GluI GCNGC 2 cut(s) 225, 330
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 305
Hin1II CATG 5 cut(s) 194, 224, 338, 371, 553
HinfI GANTC 2 cut(s) 196, 242
Hpy188I TCNGA 1 cut(s) 523
HpyAV CCTTC 4 cut(s) 68, 77, 310, 518
HpyCH4V TGCA 5 cut(s) 22, 224, 406, 426, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 86, 514
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 5 cut(s) 194, 224, 338, 371, 553
Kzo9I GATC 3 cut(s) 16, 274, 565
LmnI GCTCC 2 cut(s) 77, 86
LpnPI CCDG 1 cut(s) 279
Lsp1109I GCAGC 2 cut(s) 236, 341
LweI GCATC 4 cut(s) 40, 94, 136, 469
MaeI CTAG 3 cut(s) 281, 603, 607
MaeIII GTNAC 2 cut(s) 193, 440
MalI GATC 3 cut(s) 18, 276, 567
MboI GATC 3 cut(s) 16, 274, 565
MboII GAAGA 3 cut(s) 104, 146, 188
MflI RGATCY 3 cut(s) 16, 274, 565
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 7 cut(s) 68, 122, 164, 202, 320, 401, 452
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 79, 121
MnlI CCTC 5 cut(s) 58, 121, 223, 261, 352
Mox20I TGGCCA 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 428
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 59, 86, 514
NdeI CATATG 4 cut(s) 26, 208, 512, 575
NdeII GATC 3 cut(s) 16, 274, 565
NlaIII CATG 5 cut(s) 194, 224, 338, 371, 553
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 428
NspI RCATGY 1 cut(s) 224
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 226, 331
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 3 cut(s) 16, 274, 565
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 225, 330
Sau3AI GATC 3 cut(s) 16, 274, 565
SchI GAGTC 1 cut(s) 190
SetI ASST 5 cut(s) 314, 334, 421, 529, 608
SfaNI GCATC 4 cut(s) 40, 94, 136, 469
SmiMI CAYNNNNRTG 1 cut(s) 431
Sse9I AATT 7 cut(s) 68, 122, 164, 202, 320, 401, 452
SspMI CTAG 3 cut(s) 281, 603, 607
TasI AATT 7 cut(s) 68, 122, 164, 202, 320, 401, 452
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 224, 329
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 195, 198, 384
XapI RAATTY 5 cut(s) 68, 122, 164, 320, 452
XceI RCATGY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XspI CTAG 3 cut(s) 281, 603, 607
Zsp2I ATGCAT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.