Rh2CG384300
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000244
Physical Location & Seq
Forward (+)
52382596 .. 52383090
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG384300.1

Sequence Viewer

Length: 495 bp
ATGGGAGCTGAGAAGGAAAATGGAGTCAATTTCACCTCTAATTCCCGTAGTCTTACACATCCTTCTGCTTCATCTTCGGACTCAAATACACTGATGAAGAAGGCCAAGAAATATCCGTTGAGGGTTGAAGAAGAAAATGAAGTTAATTCCATCTCTAATTCACATAGCTCAACACATCCTTCAGCATCAACTTCTAACTTGCATCTGAAGAAGAAAGCAAAGAAAGTGAAGAAAGATCTCTTGGCAGATGCAATTGGTGAGATGACGACTTTACTAAAGGAGTATTTGGCAAGCAAGATGGACCTGAATAGATCCCAACCCAAAGGTGAAGAAGTATATGAAGTGGTTTCAAAGGTACCAGGGCTCAATAGATTGCAGGTTTTTAAGGCTATACGAGTATTACTGAATGGTAACCCAGAAGAATTCTTTCTATTGAAATATCTTCCTGATGATGAGAAGACAGAGTGGATACTATATCTTATTAGTCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

164

Amino Acids

18.41

Weight (kDa)

8.96

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
Acc65I GGTACC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 355
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 165, 227
AfaI GTAC 1 cut(s) 357
AgsI TTSAA 3 cut(s) 128, 351, 436
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 8, 168
AluI AGCT 2 cut(s) 8, 168
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 25, 269, 338
AvaII GGWCC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 464
BccI CCATC 2 cut(s) 158, 292
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 367
BfuI GTATCC 1 cut(s) 462
BglII AGATCT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 3 cut(s) 194, 211, 238
BpiI GAAGAC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 2 cut(s) 58, 175
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 355
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 235, 311
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 2 cut(s) 235, 311
Bst2UI CCWGG 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 2 cut(s) 58, 175
BstKTI GATC 2 cut(s) 238, 314
BstMBI GATC 2 cut(s) 235, 311
BstNI CCWGG 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 2 cut(s) 235, 311
BstYI RGATCY 2 cut(s) 235, 311
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 58, 175
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 356
CviJI RGCY 5 cut(s) 8, 104, 168, 364, 389
CviKI_1 RGCY 5 cut(s) 8, 104, 168, 364, 389
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 237, 313
DpnII GATC 2 cut(s) 235, 311
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 165, 227
Eco91I GGTNACC 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 366
FaiI YATR 5 cut(s) 165, 337, 339, 392, 475
FokI GGATG 2 cut(s) 45, 162
FriOI GRGCYC 1 cut(s) 366
HaeIII GGCC 1 cut(s) 104
HinfI GANTC 2 cut(s) 24, 80
HphI GGTGA 3 cut(s) 25, 269, 338
Hpy188I TCNGA 2 cut(s) 79, 207
Hpy188III TCNNGA 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 7, 72, 94, 189
HpyCH4V TGCA 3 cut(s) 202, 251, 376
HpyF3I CTNAG 1 cut(s) 9
KpnI GGTACC 1 cut(s) 359
Kzo9I GATC 2 cut(s) 235, 311
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 317, 345, 362, 372, 429, 459
LweI GCATC 3 cut(s) 194, 211, 238
MaeIII GTNAC 1 cut(s) 410
MalI GATC 2 cut(s) 237, 313
MboI GATC 2 cut(s) 235, 311
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 235, 311
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 6 cut(s) 28, 40, 145, 157, 252, 422
MlyI GAGTC 2 cut(s) 33, 74
MnlI CCTC 2 cut(s) 46, 114
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 144, 384, 493
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 360
NdeII GATC 2 cut(s) 235, 311
NlaIV GGNNCC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 426
PleI GAGTC 2 cut(s) 32, 74
PpsI GAGTC 2 cut(s) 32, 74
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 2 cut(s) 235, 311
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 144, 384, 493
Sau3AI GATC 2 cut(s) 235, 311
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 2 cut(s) 33, 74
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 366
SetI ASST 7 cut(s) 10, 38, 170, 306, 328, 357, 381
SfaNI GCATC 3 cut(s) 194, 211, 238
SinI GGWCC 1 cut(s) 301
Sse9I AATT 6 cut(s) 28, 40, 145, 157, 252, 422
StyD4I CCNGG 1 cut(s) 358
TasI AATT 6 cut(s) 28, 40, 145, 157, 252, 422
Tru1I TTAA 3 cut(s) 144, 384, 493
Tru9I TTAA 3 cut(s) 144, 384, 493
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 4 cut(s) 60, 110, 153, 354
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.