Rroxscaffold_5G00381630
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000244
Physical Location & Seq
Reverse (-)
61550595 .. 61555003
4409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381630.1

Sequence Viewer

Length: 1014 bp
ATGAAGAGTAAGGGCATGGAAAAATCTCAAAGTCTTGTACCTATGTCCAATTTCAACATAAAGGGCAAGGTCAAAGGAACAGGTACATCTAGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTCGCTAAAGTACTTTATGATCAAATGAACGCAGGACACAAGGCTGATGGAGACTGGAAACCGCAAGCTTATCAAGCAGTAATGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACAGACATCAGAAGTCAAAGTGGGCTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCTGAAAACCTGGAAATTTGGAATGCATATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAACTGGGATGATATCGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAATGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGCAACTTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAGAAAAAAGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCTCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTAAGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATCTGAAGGTATGTTTGTTCCCACTTTCTCTCATGTTTCAACTATTGGATCTGCTCATATGACAACCAAGGAATTGAGGGTGGAGCATTACAATTTGGATTTTCATGATATGGAATTATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

337

Amino Acids

37.97

Weight (kDa)

5.92

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 35 - 132 6.9e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AclWI GGATC 2 cut(s) 638, 943
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 4 cut(s) 381, 533, 689, 821
AcuI CTGAAG 2 cut(s) 540, 912
AfaI GTAC 5 cut(s) 39, 85, 129, 141, 735
AgsI TTSAA 8 cut(s) 55, 223, 539, 603, 685, 784, 835, 927
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 197, 485, 701, 788
AluI AGCT 4 cut(s) 197, 485, 701, 788
Alw26I GTCTC 5 cut(s) 174, 248, 280, 712, 843
AlwI GGATC 2 cut(s) 638, 943
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 593, 698
ApoI RAATTY 4 cut(s) 381, 533, 689, 821
AsuHPI GGTGA 1 cut(s) 503
BalI TGGCCA 1 cut(s) 674
BbvI GCAGC 2 cut(s) 605, 710
BccI CCATC 2 cut(s) 170, 346
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 5 cut(s) 174, 248, 280, 712, 843
BfaI CTAG 2 cut(s) 90, 650
BisI GCNGC 2 cut(s) 594, 699
BlsI GCNGC 2 cut(s) 595, 700
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 505, 838
BmuI ACTGGG 1 cut(s) 457
BpuEI CTTGAG 2 cut(s) 257, 687
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 954
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bse1I ACTGG 3 cut(s) 188, 452, 493
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 954
BseGI GGATG 6 cut(s) 127, 343, 406, 457, 616, 736
BseJI GATNNNNATC 1 cut(s) 615
BseMII CTCAG 1 cut(s) 778
BseNI ACTGG 3 cut(s) 188, 452, 493
BseXI GCAGC 2 cut(s) 605, 710
BshFI GGCC 1 cut(s) 674
BsmAI GTCTC 5 cut(s) 174, 248, 280, 712, 843
BsmI GAATGC 2 cut(s) 229, 394
BsnI GGCC 1 cut(s) 674
Bso31I GGTCTC 1 cut(s) 248
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 3 cut(s) 148, 643, 935
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 2 cut(s) 638, 943
BspTNI GGTCTC 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 3 cut(s) 188, 452, 493
BssECI CCNNGG 1 cut(s) 954
BssMI GATC 3 cut(s) 148, 643, 935
BssT1I CCWWGG 1 cut(s) 954
Bst2UI CCWGG 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 278, 336
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 764
BstEII GGTNACC 1 cut(s) 809
BstF5I GGATG 6 cut(s) 127, 343, 406, 457, 616, 736
BstKTI GATC 3 cut(s) 151, 646, 938
BstMAI GTCTC 5 cut(s) 174, 248, 280, 712, 843
BstMBI GATC 3 cut(s) 148, 643, 935
BstMWI GCNNNNNNNGC 2 cut(s) 203, 883
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 605, 710
BstX2I RGATCY 2 cut(s) 643, 935
BstYI RGATCY 2 cut(s) 643, 935
BsuRI GGCC 1 cut(s) 674
BtsCI GGATG 6 cut(s) 127, 343, 406, 457, 616, 736
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 991
Csp6I GTAC 5 cut(s) 38, 84, 128, 140, 734
CviAII CATG 7 cut(s) 16, 231, 560, 590, 737, 920, 992
CviJI RGCY 8 cut(s) 173, 197, 278, 328, 485, 674, 701, 788
CviKI_1 RGCY 8 cut(s) 173, 197, 278, 328, 485, 674, 701, 788
CviQI GTAC 5 cut(s) 38, 84, 128, 140, 734
DdeI CTNAG 1 cut(s) 764
DpnI GATC 3 cut(s) 150, 645, 937
DpnII GATC 3 cut(s) 148, 643, 935
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 278, 336
EarI CTCTTC 2 cut(s) 278, 336
Eco130I CCWWGG 1 cut(s) 954
Eco31I GGTCTC 1 cut(s) 248
Eco32I GATATC 2 cut(s) 425, 457
Eco57I CTGAAG 2 cut(s) 540, 912
Eco91I GGTNACC 1 cut(s) 809
EcoO65I GGTNACC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 375
EcoRV GATATC 2 cut(s) 425, 457
EcoT14I CCWWGG 1 cut(s) 954
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 954
FaeI CATG 7 cut(s) 19, 234, 563, 593, 740, 923, 995
FatI CATG 7 cut(s) 15, 230, 559, 589, 736, 919, 991
FauNDI CATATG 4 cut(s) 394, 577, 881, 945
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 594, 699
FokI GGATG 6 cut(s) 134, 350, 393, 464, 603, 743
Fsp4HI GCNGC 2 cut(s) 594, 699
FspBI CTAG 2 cut(s) 90, 650
GluI GCNGC 2 cut(s) 594, 699
HaeIII GGCC 1 cut(s) 674
Hin1II CATG 7 cut(s) 19, 234, 563, 593, 740, 923, 995
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 4 cut(s) 270, 401, 565, 611
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 2 cut(s) 314, 892
Hpy188III TCNNGA 2 cut(s) 262, 992
HpyAV CCTTC 3 cut(s) 488, 679, 887
HpyCH4V TGCA 3 cut(s) 392, 593, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 883
HpyF3I CTNAG 1 cut(s) 764
Hsp92II CATG 7 cut(s) 19, 234, 563, 593, 740, 923, 995
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 148, 643, 935
LmnI GCTCC 2 cut(s) 497, 970
LpnPI CCDG 7 cut(s) 66, 147, 169, 362, 389, 433, 474
Lsp1109I GCAGC 2 cut(s) 605, 710
LweI GCATC 2 cut(s) 505, 838
MaeI CTAG 2 cut(s) 90, 650
MaeIII GTNAC 3 cut(s) 402, 562, 809
MalI GATC 3 cut(s) 150, 645, 937
MboI GATC 3 cut(s) 148, 643, 935
MboII GAAGA 7 cut(s) 16, 295, 353, 515, 533, 557, 830
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 2 cut(s) 643, 935
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 3 cut(s) 264, 410, 559
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 5 cut(s) 468, 592, 630, 721, 957
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 394
MscI TGGCCA 1 cut(s) 674
MseI TTAA 2 cut(s) 255, 843
MslI CAYNNNNRTG 2 cut(s) 411, 800
Msp20I TGGCCA 1 cut(s) 674
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 2 cut(s) 229, 394
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 203, 883
NdeI CATATG 4 cut(s) 394, 577, 881, 945
NdeII GATC 3 cut(s) 148, 643, 935
NlaIII CATG 7 cut(s) 19, 234, 563, 593, 740, 923, 995
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 402, 562
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 593
PagI TCATGA 1 cut(s) 991
PctI GAATGC 2 cut(s) 229, 394
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 2 cut(s) 595, 700
PleI GAGTC 3 cut(s) 264, 409, 559
PpsI GAGTC 3 cut(s) 264, 409, 559
Psp6I CCWGG 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 357
PsuI RGATCY 2 cut(s) 643, 935
RsaI GTAC 5 cut(s) 39, 85, 129, 141, 735
RsaNI GTAC 5 cut(s) 38, 84, 128, 140, 734
RseI CAYNNNNRTG 2 cut(s) 411, 800
SaqAI TTAA 2 cut(s) 255, 843
SatI GCNGC 2 cut(s) 594, 699
Sau3AI GATC 3 cut(s) 148, 643, 935
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 3 cut(s) 264, 410, 559
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 2 cut(s) 505, 838
SmiMI CAYNNNNRTG 2 cut(s) 411, 800
SmlI CTYRAG 2 cut(s) 272, 702
SmoI CTYRAG 2 cut(s) 272, 702
SsiI CCGC 1 cut(s) 191
SspMI CTAG 2 cut(s) 90, 650
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 954
TatI WGTACW 3 cut(s) 127, 139, 733
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 255, 843
Tru9I TTAA 2 cut(s) 255, 843
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 402, 562
TseI GCWGC 2 cut(s) 593, 698
Tsp45I GTSAC 2 cut(s) 402, 562
TspDTI ATGAA 7 cut(s) 17, 170, 354, 564, 567, 753, 980
TspRI CASTG 1 cut(s) 370
XapI RAATTY 4 cut(s) 381, 533, 689, 821
XceI RCATGY 1 cut(s) 593
XspI CTAG 2 cut(s) 90, 650
ZrmI AGTACT 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.