Prupe.7G027800_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000244
Physical Location & Seq
Forward (+)
5191909 .. 5192806
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G027800.1

Sequence Viewer

Length: 693 bp
ATGGAGCGTTCATTAGCGGATATACTTAGAGAAGAACGTCAGATCGGTCATAAAGGAGATGGTGGTTGGAAAGCAATTGCTTATAACACCGCTGCTGCCATATTGTCAGCACAATTTGATATTGAAGTAAGTGATGATAACATAAGAAATCGTGTTAAAACTTGGAAAAGGTTTTATGATATAGTCAGTGATATATTAAGTCAGAGTGGATTCAATTGGAATGCAACAAAGAAGATGCTCAGTGTAGATGAAGACAATGTTTGGGATGAGTATGTGAAGTCTCATGAAGATGCTAGAACTTTTCGATTTAAAGTGATTGCAAACTGGGATGATATAGTGGATTTATGTGGCAAAGATAGAGCTACGGGAGAGGATGCTGAAACATGTGCAGAAGCTGCTGAGATTATGACTCCTGAGAGTGATCCCAATAATATTGTTGATTTGGAAAGTGATACTCAAGGTTTTGAGAGTTGTCAGGTTGATGATGTTTCACCCAACTCTTGTTGTCCAAAGAGAAGAAATCAAAAACCTTCTGATATTCCCCCACCAAAAAAAAGAGGTACAACTAATGTTCTTGCTGATTCAGTGGCTAAAATGGCTTCATCTTTGGAACACTTTATCAATTCTACTACACAAAAGCATGATCCAACAGAAGTATATAATGAAGTCATTGCAATTCCAGATCTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

231

Amino Acids

25.83

Weight (kDa)

4.68

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AciI CCGC 2 cut(s) 17, 90
AclWI GGATC 2 cut(s) 416, 638
AfaI GTAC 1 cut(s) 562
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 2 cut(s) 125, 214
AluBI AGCT 2 cut(s) 362, 395
AluI AGCT 2 cut(s) 362, 395
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 416, 638
AlwNI CAGNNNCTG 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 92, 95, 395
AsuHPI GGTGA 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 79, 82, 382
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 682
BisI GCNGC 3 cut(s) 93, 96, 396
BlsI GCNGC 3 cut(s) 94, 97, 397
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 3 cut(s) 225, 280, 364
BmuI ACTGGG 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 669
BseGI GGATG 3 cut(s) 271, 334, 379
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 3 cut(s) 253, 390, 405
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 3 cut(s) 79, 82, 382
BsgI GTGCAG 1 cut(s) 408
BsmAI GTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 42, 421, 643, 682
BspACI CCGC 2 cut(s) 17, 90
BspCNI CTCAG 3 cut(s) 252, 391, 406
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 2 cut(s) 416, 638
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 1 cut(s) 329
BssMI GATC 4 cut(s) 42, 421, 643, 682
BstAPI GCANNNNNTGC 1 cut(s) 395
BstDEI CTNAG 4 cut(s) 26, 239, 399, 414
BstF5I GGATG 3 cut(s) 271, 334, 379
BstKTI GATC 4 cut(s) 45, 424, 646, 685
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 4 cut(s) 42, 421, 643, 682
BstMWI GCNNNNNNNGC 2 cut(s) 395, 596
BstNSI RCATGY 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 79, 82, 382
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BtsCI GGATG 3 cut(s) 271, 334, 379
BtsIMutI CAGTG 3 cut(s) 193, 247, 591
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 283
Csp6I GTAC 1 cut(s) 561
CviAII CATG 3 cut(s) 284, 384, 641
CviJI RGCY 4 cut(s) 362, 395, 590, 599
CviKI_1 RGCY 4 cut(s) 362, 395, 590, 599
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 4 cut(s) 26, 239, 399, 414
DpnI GATC 4 cut(s) 44, 423, 645, 684
DpnII GATC 4 cut(s) 42, 421, 643, 682
DraI TTTAAA 1 cut(s) 310
FaeI CATG 3 cut(s) 287, 387, 644
FatI CATG 3 cut(s) 283, 383, 640
Fnu4HI GCNGC 3 cut(s) 93, 96, 396
FokI GGATG 3 cut(s) 278, 341, 386
Fsp4HI GCNGC 3 cut(s) 93, 96, 396
FspBI CTAG 1 cut(s) 294
GluI GCNGC 3 cut(s) 93, 96, 396
Hin1II CATG 3 cut(s) 287, 387, 644
HinfI GANTC 3 cut(s) 210, 409, 581
HphI GGTGA 1 cut(s) 483
Hpy188I TCNGA 3 cut(s) 42, 204, 535
Hpy188III TCNNGA 3 cut(s) 284, 413, 680
HpyAV CCTTC 1 cut(s) 540
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 224, 320, 389, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 596
HpyF3I CTNAG 4 cut(s) 26, 239, 399, 414
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 3 cut(s) 287, 387, 644
Kzo9I GATC 4 cut(s) 42, 421, 643, 682
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 310, 426, 461
Lsp1109I GCAGC 3 cut(s) 79, 82, 382
LweI GCATC 3 cut(s) 225, 280, 364
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 37
MalI GATC 4 cut(s) 44, 423, 645, 684
MboI GATC 4 cut(s) 42, 421, 643, 682
MboII GAAGA 5 cut(s) 44, 244, 263, 299, 528
MfeI CAATTG 2 cut(s) 75, 214
MflI RGATCY 1 cut(s) 682
MluCI AATT 5 cut(s) 75, 113, 214, 622, 675
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 47, 671
MnlI CCTC 2 cut(s) 364, 551
MseI TTAA 3 cut(s) 156, 197, 309
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 92
MunI CAATTG 2 cut(s) 75, 214
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 395, 596
NdeII GATC 4 cut(s) 42, 421, 643, 682
NlaIII CATG 3 cut(s) 287, 387, 644
NspI RCATGY 1 cut(s) 387
PagI TCATGA 1 cut(s) 283
PciI ACATGT 1 cut(s) 383
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 210, 581
PkrI GCNGC 3 cut(s) 94, 97, 397
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 383
PsiI TTATAA 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 3 cut(s) 156, 197, 309
SatI GCNGC 3 cut(s) 93, 96, 396
Sau3AI GATC 4 cut(s) 42, 421, 643, 682
SchI GAGTC 1 cut(s) 403
SetI ASST 8 cut(s) 40, 173, 364, 397, 463, 480, 532, 562
SfaNI GCATC 3 cut(s) 225, 280, 364
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 5 cut(s) 75, 113, 214, 622, 675
SsiI CCGC 2 cut(s) 17, 90
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 294
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 304
TaqII GACCGA 1 cut(s) 35
TasI AATT 5 cut(s) 75, 113, 214, 622, 675
TfiI GAWTC 2 cut(s) 210, 581
Tru1I TTAA 3 cut(s) 156, 197, 309
Tru9I TTAA 3 cut(s) 156, 197, 309
TscAI CASTG 3 cut(s) 193, 247, 591
TseI GCWGC 3 cut(s) 92, 95, 395
TspDTI ATGAA 4 cut(s) 264, 300, 591, 678
TspRI CASTG 3 cut(s) 193, 247, 591
XceI RCATGY 1 cut(s) 387
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.