Rmu_sc0001512.1_g000009
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001512.1
OG0000244
Physical Location & Seq
Forward (+)
40068 .. 40949
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001512.1_g000009.1.cds

Sequence Viewer

Length: 792 bp
atgagtacacttggaggaaatgaggtcaaaaaccgaaaaccaaatggaaagaatgaaggaaagagcaaaggaaaggtcgaaggcaagaactatttgcagtggaatttaaatatggagcgtgctttggctgatatacttcgtgaggaacgaggtctgggccataaaggagataatggttggaaaactgtagcttataatacagctgctgatattttatctgcacagtttgatattcaaataagtgctgacaatataaaaaaccgtgtgaaatcatggaaaaagttctatggaattgttagtgatatcttgagccaaagtggatttagctgggattcctcaacacaaatgataagcgttgatgaaaacagtgtatgggaagaatatgtgaagtctcatgatgaagctgcaggctttcggtttaaaagaatcccaaattgggatgatatagtttatttgtgtggcaaagatagagccactggagagggtgctgaaacaggtttcgaagccactgaggttatgactcctcctgctaatgaagataatcatgtcgatttggaaggtgatgaccaagcatcagaagatattcacatcattgaagacatttcactgaaccaagcaagttctcagaaaaagagaaatgaagcaacagtctcttctaatgcacctcctccaaagagaagagttacaactaaagatgtcttaggtacttccgtggatagaatggcttcatcttttgaagaactcattcgtgctactacaaaaagtcttgccccgaaagatgtatggacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

263

Amino Acids

29.29

Weight (kDa)

5.3

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 7, 706
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 236, 596, 737
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 4 cut(s) 191, 203, 327, 404
AluI AGCT 4 cut(s) 191, 203, 327, 404
Alw26I GTCTC 2 cut(s) 396, 655
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 203, 404
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
Asp700I GAANNNNTTC 4 cut(s) 281, 582, 724, 744
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 572
AsuII TTCGAA 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 696, 729
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 190, 391
BcoDI GTCTC 2 cut(s) 396, 655
BfmI CTRYAG 2 cut(s) 186, 405
BisI GCNGC 2 cut(s) 204, 405
BlsI GCNGC 2 cut(s) 205, 406
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 481
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 501, 638
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 513, 657
BseXI GCAGC 2 cut(s) 190, 391
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 396, 655
BsnI GGCC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 501
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 502, 637
BspHI TCATGA 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 711
Bst4CI ACNGT 5 cut(s) 187, 225, 263, 368, 649
Bst6I CTCTTC 2 cut(s) 658, 673
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 120, 409
BstDEI CTNAG 3 cut(s) 510, 624, 700
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 396, 655
BstSFI CTRYAG 2 cut(s) 186, 405
BstV1I GCAGC 2 cut(s) 190, 391
BstV2I GAAGAC 1 cut(s) 603
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 5 cut(s) 104, 373, 474, 507, 605
Cac8I GCNNGC 2 cut(s) 120, 409
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 6, 705
CviAII CATG 3 cut(s) 273, 395, 545
CviQI GTAC 2 cut(s) 6, 705
DdeI CTNAG 3 cut(s) 510, 624, 700
DraI TTTAAA 2 cut(s) 108, 421
Eam1104I CTCTTC 2 cut(s) 658, 673
EarI CTCTTC 2 cut(s) 658, 673
Eco32I GATATC 1 cut(s) 304
EcoRV GATATC 1 cut(s) 304
FaeI CATG 3 cut(s) 276, 398, 548
FatI CATG 3 cut(s) 272, 394, 544
Fnu4HI GCNGC 2 cut(s) 204, 405
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 204, 405
GluI GCNGC 2 cut(s) 204, 405
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 3 cut(s) 276, 398, 548
HinfI GANTC 3 cut(s) 332, 426, 520
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 577, 627
Hpy188III TCNNGA 3 cut(s) 140, 307, 395
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 3 cut(s) 50, 74, 551
HpyCH4III ACNGT 5 cut(s) 187, 225, 263, 368, 649
HpyCH4V TGCA 4 cut(s) 97, 221, 407, 662
HpyF3I CTNAG 3 cut(s) 510, 624, 700
Hsp92II CATG 3 cut(s) 276, 398, 548
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 140, 313, 393, 462, 480, 540
Lsp1109I GCAGC 2 cut(s) 190, 391
LweI GCATC 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 682
MboII GAAGA 7 cut(s) 389, 548, 590, 608, 645, 690, 749
MluCI AATT 3 cut(s) 103, 291, 433
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 158
MroXI GAANNNNTTC 4 cut(s) 281, 582, 724, 744
MseI TTAA 2 cut(s) 107, 420
MspA1I CMGCKG 1 cut(s) 203
NlaIII CATG 3 cut(s) 276, 398, 548
NspV TTCGAA 1 cut(s) 501
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 4 cut(s) 281, 582, 724, 744
PfeI GAWTC 2 cut(s) 332, 426
PkrI GCNGC 2 cut(s) 205, 406
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 7, 706
RsaNI GTAC 2 cut(s) 6, 705
SaqAI TTAA 2 cut(s) 107, 420
SatI GCNGC 2 cut(s) 204, 405
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 514
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 2 cut(s) 186, 405
SfuI TTCGAA 1 cut(s) 501
SmiI ATTTAAAT 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 3 cut(s) 103, 291, 433
SwaI ATTTAAAT 1 cut(s) 108
TaaI ACNGT 5 cut(s) 187, 225, 263, 368, 649
TaqI TCGA 3 cut(s) 78, 501, 549
TasI AATT 3 cut(s) 103, 291, 433
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 332, 426
Tru1I TTAA 2 cut(s) 107, 420
Tru9I TTAA 2 cut(s) 107, 420
TscAI CASTG 5 cut(s) 104, 373, 481, 514, 612
TseI GCWGC 2 cut(s) 203, 404
TspDTI ATGAA 6 cut(s) 69, 375, 414, 549, 654, 717
TspGWI ACGGA 1 cut(s) 700
TspRI CASTG 5 cut(s) 104, 373, 481, 514, 612
XapI RAATTY 1 cut(s) 103
XmnI GAANNNNTTC 4 cut(s) 281, 582, 724, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.