Rorug02G0357800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000244
Physical Location & Seq
Forward (+)
45133301 .. 45135681
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0357800.1

Sequence Viewer

Length: 543 bp
ATGGTAAAAGTCAAGGAGCCCGACACATCGAAAGCTGCAAGGTTGGAAAGAATTATGAGTGCCAAAAAGTGCAAGCAGCAGTGCTTAAGAAATTGTTCTTGCACAGCATATATGAGCATGGACATTGAAGGGCGCATTGATTGCTTGACATGGTATGGTGAGTTGCTGGACATCACAGAGCACACTGCAGTGGGACGAGATCTTTATGTTCATGTAGATCATATGGAGTCAGCTGAGAATGCCAGAAAATCAAAAGGCTTCTTTGGAAGGAGGGTGATGCTGACTGTTCCAACATTGTCTGTTCTTCTGCCATTGGTACTGGTCATTGGCTTAAGAGGAAAACAGAAGGTCTGGCAGCTGTGGAGAGAAGACAGAGCCTTAGAAATGTTGGACTCATCACTAGAGTCATATCAGCCTAATGAAGTGTTAAGATGTATTCAAGTTGGGTTGCTGGGTGTAGAAGATTCAAATGACCGACCAACCATATCCTATGTGAACTTCTGGAACCTCATTGCGCGTGCGCATGGAAAGCTGTTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

180

Amino Acids

20.6

Weight (kDa)

8.53

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 58 8.5e-16 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 522
AccII CGCG 1 cut(s) 517
AfaI GTAC 1 cut(s) 318
AflII CTTAAG 2 cut(s) 85, 331
AgsI TTSAA 3 cut(s) 128, 440, 468
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 4 cut(s) 35, 233, 358, 532
AluI AGCT 4 cut(s) 35, 233, 358, 532
Alw21I GWGCWC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 35, 76, 355
Asp700I GAANNNNTTC 1 cut(s) 94
AspLEI GCGC 3 cut(s) 135, 517, 523
AsuHPI GGTGA 2 cut(s) 170, 286
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 22, 88, 367
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 2 cut(s) 85, 331
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 36, 77, 356
BlsI GCNGC 3 cut(s) 37, 78, 357
BmiI GGNNCC 2 cut(s) 18, 506
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 510
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 3 cut(s) 22, 88, 367
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 21, 183
Bsp143I GATC 2 cut(s) 199, 217
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 18, 506
BspMAI CTGCAG 1 cut(s) 190
BspTI CTTAAG 2 cut(s) 85, 331
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 1 cut(s) 324
BssMI GATC 2 cut(s) 199, 217
Bst4CI ACNGT 1 cut(s) 286
BstAFI CTTAAG 2 cut(s) 85, 331
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 74, 519
BstDEI CTNAG 2 cut(s) 234, 379
BstFNI CGCG 1 cut(s) 517
BstHHI GCGC 3 cut(s) 135, 517, 523
BstKTI GATC 2 cut(s) 202, 220
BstMBI GATC 2 cut(s) 199, 217
BstMWI GCNNNNNNNGC 3 cut(s) 141, 239, 529
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 3 cut(s) 22, 88, 367
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsI GCAGTG 3 cut(s) 86, 183, 195
BtsIMutI CAGTG 3 cut(s) 86, 183, 195
Cac8I GCNNGC 2 cut(s) 74, 519
CfoI GCGC 3 cut(s) 135, 517, 523
Csp6I GTAC 1 cut(s) 317
CviAII CATG 4 cut(s) 118, 150, 212, 524
CviJI RGCY 9 cut(s) 19, 35, 233, 258, 330, 358, 377, 415, 532
CviKI_1 RGCY 9 cut(s) 19, 35, 233, 258, 330, 358, 377, 415, 532
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 234, 379
DpnI GATC 2 cut(s) 201, 219
DpnII GATC 2 cut(s) 199, 217
Eco24I GRGCYC 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 4 cut(s) 121, 153, 215, 527
FaqI GGGAC 1 cut(s) 207
FatI CATG 4 cut(s) 117, 149, 211, 523
FauNDI CATATG 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 36, 77, 356
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 36, 77, 356
FspAI RTGCGCAY 1 cut(s) 522
FspBI CTAG 1 cut(s) 401
FspI TGCGCA 1 cut(s) 522
GlaI GCGC 3 cut(s) 134, 516, 522
GluI GCNGC 3 cut(s) 36, 77, 356
GsaI CCCAGC 1 cut(s) 455
HhaI GCGC 3 cut(s) 135, 517, 523
Hin1II CATG 4 cut(s) 121, 153, 215, 527
Hin6I GCGC 3 cut(s) 133, 515, 521
HinP1I GCGC 3 cut(s) 133, 515, 521
HinfI GANTC 4 cut(s) 227, 392, 404, 464
HphI GGTGA 2 cut(s) 170, 286
Hpy166II GTNNAC 1 cut(s) 496
Hpy188III TCNNGA 1 cut(s) 502
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 3 cut(s) 122, 261, 340
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 38, 72, 102, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 239, 529
HpyF3I CTNAG 2 cut(s) 234, 379
Hsp92II CATG 4 cut(s) 121, 153, 215, 527
HspAI GCGC 3 cut(s) 133, 515, 521
Kzo9I GATC 2 cut(s) 199, 217
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 152, 256, 305, 337, 437, 487
Lsp1109I GCAGC 3 cut(s) 22, 88, 367
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 401
MalI GATC 2 cut(s) 201, 219
MboI GATC 2 cut(s) 199, 217
MboII GAAGA 3 cut(s) 296, 380, 473
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 21, 183
MluCI AATT 2 cut(s) 51, 91
MlyI GAGTC 3 cut(s) 236, 386, 413
MmeI TCCRAC 3 cut(s) 24, 314, 369
MnlI CCTC 3 cut(s) 264, 329, 518
MroXI GAANNNNTTC 1 cut(s) 94
MseI TTAA 3 cut(s) 86, 332, 428
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 2 cut(s) 233, 358
MspCI CTTAAG 2 cut(s) 85, 331
Mva1269I GAATGC 1 cut(s) 244
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 3 cut(s) 141, 239, 529
NdeI CATATG 1 cut(s) 222
NdeII GATC 2 cut(s) 199, 217
NlaIII CATG 4 cut(s) 121, 153, 215, 527
NlaIV GGNNCC 2 cut(s) 18, 506
NsbI TGCGCA 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 188
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 3 cut(s) 37, 78, 357
PleI GAGTC 3 cut(s) 235, 386, 412
PpsI GAGTC 3 cut(s) 235, 386, 412
PspFI CCCAGC 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 18, 506
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 2 cut(s) 233, 358
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 86, 332, 428
SatI GCNGC 3 cut(s) 36, 77, 356
Sau3AI GATC 2 cut(s) 199, 217
SchI GAGTC 3 cut(s) 236, 386, 413
SduI GDGCHC 2 cut(s) 21, 183
SetI ASST 7 cut(s) 37, 44, 235, 351, 360, 510, 534
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 85, 331
SmoI CTYRAG 2 cut(s) 85, 331
Sse9I AATT 2 cut(s) 51, 91
SspMI CTAG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 29
TaqII GACCGA 1 cut(s) 489
TasI AATT 2 cut(s) 51, 91
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 3 cut(s) 86, 332, 428
Tru9I TTAA 3 cut(s) 86, 332, 428
TscAI CASTG 3 cut(s) 86, 190, 195
TseI GCWGC 3 cut(s) 35, 76, 355
TspDTI ATGAA 2 cut(s) 200, 435
TspRI CASTG 3 cut(s) 86, 190, 195
Vha464I CTTAAG 2 cut(s) 85, 331
XmnI GAANNNNTTC 1 cut(s) 94
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.