Rmu_sc0023501.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023501.1
Physical Location & Seq
Reverse (-)
1423 .. 2289
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023501.1_g000002.1.cds

Sequence Viewer

Length: 768 bp
atgagcagacttggagaaaatgaggtcaaaaaccgaaaaacaaatggaaagagcaaaggaaagactgaaggcaagaattatttgcagtggaatttagatatggggcgtgctttggctgacatacttggtgaggaaagaggcttaggccataaaggagataatggttggaaagctgtaacttataatacagctgctgatattttatctgcacaatttgatattctaataattgctgacaatataaaaaatcgtgtgaagtcatggaaaaagctttatggaattgtaagtgatatcttgagccaaagtggatttagttgggattcctcaacacaaatgataattgtcgatgaaaacaacgtatgggaagaatatgtgaaggtatttgaaagcttttggtttaaaagaatcccaaattgggatgatgtagttgatttgtgtggcaaagatagagccactggagagggtgctaaaacaagtttcgaagccactgaggttatgactcctcctgctaatgaagatggtcacattgatttggataaccaagcatcagaagatattcacattattgacgacatttcacccaaccaagcaagctctcagaaaaaagaaatgaagctacagtctcttctagtgtacctcctccaaagcgaagagttacaactaaagatttcttgggtacttcggtggacagaatggctttatcttttcaagaactcatctgtgctactacaaaaagtcttgccccaaaagatgtgtggacagaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

5.4

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 635, 678
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 2 cut(s) 386, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 6 cut(s) 173, 191, 271, 390, 594, 616
AluI AGCT 6 cut(s) 173, 191, 271, 390, 594, 616
Alw26I GTCTC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 140, 570
AsuII TTCGAA 1 cut(s) 480
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 617
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmsI GCATC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 480, 611
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 2 cut(s) 492, 629
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 627
BsnI GGCC 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 480
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 481, 610
BspT104I TTCGAA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 2 cut(s) 630, 645
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 108, 592
BstDEI CTNAG 3 cut(s) 142, 489, 597
BstF5I GGATG 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 627
BstSFI CTRYAG 1 cut(s) 617
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 3 cut(s) 92, 453, 486
Cac8I GCNNGC 2 cut(s) 108, 592
CaiI CAGNNNCTG 1 cut(s) 194
Csp6I GTAC 2 cut(s) 634, 677
CviAII CATG 1 cut(s) 261
CviQI GTAC 2 cut(s) 634, 677
DdeI CTNAG 3 cut(s) 142, 489, 597
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 630, 645
EarI CTCTTC 2 cut(s) 630, 645
Eco32I GATATC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 292
FaeI CATG 1 cut(s) 264
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 629
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 264
HindIII AAGCTT 2 cut(s) 269, 388
HinfI GANTC 3 cut(s) 320, 405, 499
HphI GGTGA 2 cut(s) 140, 570
Hpy166II GTNNAC 3 cut(s) 634, 687, 758
Hpy188I TCNGA 2 cut(s) 550, 600
Hpy188III TCNNGA 2 cut(s) 295, 709
Hpy8I GTNNAC 3 cut(s) 634, 687, 758
HpyAV CCTTC 2 cut(s) 62, 370
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 85, 209
HpyF3I CTNAG 3 cut(s) 142, 489, 597
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 264
LpnPI CCDG 2 cut(s) 441, 519
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 554
MaeI CTAG 1 cut(s) 629
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 175, 521, 654
MboII GAAGA 5 cut(s) 377, 527, 563, 617, 662
MluCI AATT 7 cut(s) 76, 91, 212, 228, 279, 339, 412
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 9 cut(s) 16, 124, 131, 334, 454, 484, 513, 647, 650
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 191
NlaIII CATG 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 521
NspV TTCGAA 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 320, 405
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PsiI TTATAA 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 635, 678
RsaNI GTAC 2 cut(s) 634, 677
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 554
SfcI CTRYAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 7 cut(s) 76, 91, 212, 228, 279, 339, 412
SspMI CTAG 1 cut(s) 629
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 345, 480
TasI AATT 7 cut(s) 76, 91, 212, 228, 279, 339, 412
TfiI GAWTC 2 cut(s) 320, 405
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 3 cut(s) 92, 460, 493
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 363, 528, 626
TspRI CASTG 3 cut(s) 92, 460, 493
XapI RAATTY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.