Rh1AG259900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000244
Physical Location & Seq
Reverse (-)
48046005 .. 48052389
6385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG259900.1

Sequence Viewer

Length: 960 bp
ATGGCCACAGGAGAAATGAGTAGACTTGGAGGAAACGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCTGAAGGCAAGAACTATTTGCAGTGGAATTTAGATATGGAGCGTGCTTTGGCTGATATACTTCTTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTACGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAGAACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAACAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCGCTTGGTTCATAGAGAACGACAAACAGTTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

319

Amino Acids

35.72

Weight (kDa)

5.02

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 38 - 133 2.6e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccI GTMKAC 1 cut(s) 22
AclWI GGATC 1 cut(s) 958
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 678, 721
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 251, 752, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 6 cut(s) 200, 206, 218, 342, 419, 426
AluI AGCT 6 cut(s) 200, 206, 218, 342, 419, 426
Alw26I GTCTC 2 cut(s) 411, 670
AlwI GGATC 1 cut(s) 958
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 2 cut(s) 3, 172
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 4 cut(s) 296, 597, 739, 759
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 587, 612
AsuII TTCGAA 1 cut(s) 516
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 411, 670
BfaI CTAG 2 cut(s) 672, 831
BfmI CTRYAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 823
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 1 cut(s) 596
BmuI ACTGGG 1 cut(s) 899
BpmI CTGGAG 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 176, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 496, 905
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 516, 653
BseNI ACTGG 2 cut(s) 496, 905
BseRI GAGGAG 2 cut(s) 528, 672
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 2 cut(s) 5, 174
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 2 cut(s) 411, 670
BsmFI GGGAC 1 cut(s) 887
BsnI GGCC 2 cut(s) 5, 174
Bsp119I TTCGAA 1 cut(s) 516
Bsp143I GATC 2 cut(s) 823, 950
BspANI GGCC 2 cut(s) 5, 174
BspCNI CTCAG 2 cut(s) 517, 652
BspHI TCATGA 1 cut(s) 409
BspPI GGATC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 496, 905
BssMI GATC 2 cut(s) 823, 950
Bst4CI ACNGT 4 cut(s) 240, 278, 383, 882
Bst6I CTCTTC 2 cut(s) 673, 688
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 135, 853
BstDEI CTNAG 2 cut(s) 525, 639
BstF5I GGATG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 2 cut(s) 826, 953
BstMAI GTCTC 2 cut(s) 411, 670
BstMBI GATC 2 cut(s) 823, 950
BstNSI RCATGY 1 cut(s) 855
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 823, 950
BstYI RGATCY 2 cut(s) 823, 950
BsuRI GGCC 2 cut(s) 5, 174
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 5 cut(s) 119, 388, 489, 522, 912
Cac8I GCNNGC 2 cut(s) 135, 853
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 677, 720
CviAII CATG 6 cut(s) 288, 410, 560, 811, 852, 889
CviQI GTAC 2 cut(s) 677, 720
DdeI CTNAG 2 cut(s) 525, 639
DpnI GATC 2 cut(s) 825, 952
DpnII GATC 2 cut(s) 823, 950
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 673, 688
EarI CTCTTC 2 cut(s) 673, 688
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 319
FaeI CATG 6 cut(s) 291, 413, 563, 814, 855, 892
FaqI GGGAC 1 cut(s) 887
FatI CATG 6 cut(s) 287, 409, 559, 810, 851, 888
FauNDI CATATG 1 cut(s) 946
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 672, 831
GlaI GCGC 1 cut(s) 856
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 5, 174
HhaI GCGC 1 cut(s) 857
Hin1II CATG 6 cut(s) 291, 413, 563, 814, 855, 892
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HindIII AAGCTT 1 cut(s) 424
HinfI GANTC 3 cut(s) 347, 441, 535
HphI GGTGA 2 cut(s) 587, 612
Hpy166II GTNNAC 2 cut(s) 23, 677
Hpy188I TCNGA 2 cut(s) 592, 642
Hpy188III TCNNGA 4 cut(s) 155, 322, 410, 831
Hpy8I GTNNAC 2 cut(s) 23, 677
HpyAV CCTTC 4 cut(s) 65, 89, 566, 889
HpyCH4III ACNGT 4 cut(s) 240, 278, 383, 882
HpyCH4V TGCA 3 cut(s) 112, 236, 956
HpyF3I CTNAG 2 cut(s) 525, 639
Hsp92II CATG 6 cut(s) 291, 413, 563, 814, 855, 892
HspAI GCGC 1 cut(s) 855
Kzo9I GATC 2 cut(s) 823, 950
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 155, 328, 477, 495, 555, 918
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 596
MaeI CTAG 2 cut(s) 672, 831
MaeIII GTNAC 1 cut(s) 697
MalI GATC 2 cut(s) 825, 952
MboI GATC 2 cut(s) 823, 950
MboII GAAGA 7 cut(s) 404, 563, 605, 660, 705, 764, 848
MflI RGATCY 2 cut(s) 823, 950
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 118, 306, 448
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 4 cut(s) 296, 597, 739, 759
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 218
NdeI CATATG 1 cut(s) 946
NdeII GATC 2 cut(s) 823, 950
NlaIII CATG 6 cut(s) 291, 413, 563, 814, 855, 892
NspI RCATGY 1 cut(s) 855
NspV TTCGAA 1 cut(s) 516
PaeI GCATGC 1 cut(s) 855
PagI TCATGA 1 cut(s) 409
PdmI GAANNNNTTC 4 cut(s) 296, 597, 739, 759
PfeI GAWTC 2 cut(s) 347, 441
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PsiI TTATAA 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 2 cut(s) 823, 950
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 678, 721
RsaNI GTAC 2 cut(s) 677, 720
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 823, 950
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 1 cut(s) 529
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 155, 322
SmoI CTYRAG 2 cut(s) 155, 322
SphI GCATGC 1 cut(s) 855
Sse9I AATT 3 cut(s) 118, 306, 448
SspMI CTAG 2 cut(s) 672, 831
TaaI ACNGT 4 cut(s) 240, 278, 383, 882
TaqI TCGA 2 cut(s) 516, 564
TasI AATT 3 cut(s) 118, 306, 448
TfiI GAWTC 2 cut(s) 347, 441
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 5 cut(s) 119, 388, 496, 529, 912
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 9 cut(s) 84, 390, 429, 564, 669, 732, 853, 929, 933
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 5 cut(s) 119, 388, 496, 529, 912
XapI RAATTY 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 830
XceI RCATGY 1 cut(s) 855
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 4 cut(s) 296, 597, 739, 759
XspI CTAG 2 cut(s) 672, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.