Rh2BG187200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000244
Physical Location & Seq
Reverse (-)
16720332 .. 16728022
7691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG187200.1

Sequence Viewer

Length: 1179 bp
ATGGAGACTGGTGAGGTCAATCAAGTCACCGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGTAGTGATGTTAAGGACGAAGACATCGATCGCTTCATCTGGGAAATGCTTAAAAATGACGACGGCGATGAAGATTTAAGCACACGGAACCCAGAAATTATTTTGGGAGATCGAGACTGGAGTCTGAAGAGAGAAGAAGCTGCATGGTCGGACAAAGAGGAGGGACCGAATGGACTTGGAGGAAACGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCTGAAGGCAAGAACTATTTGCAGTGGAATTTAGATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCAGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTACGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCAATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAGAACATTTCAGCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAACAGATCTTTCTAGAGAAGAACAAATAAAAGCATGTGCTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

392

Amino Acids

44.0

Weight (kDa)

4.71

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 111 - 206 2.1e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccII CGCG 1 cut(s) 32
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 1177
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 215, 333
AfaI GTAC 2 cut(s) 897, 940
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 3 cut(s) 470, 971, 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AluBI AGCT 7 cut(s) 209, 419, 425, 437, 561, 638, 645
AluI AGCT 7 cut(s) 209, 419, 425, 437, 561, 638, 645
Alw26I GTCTC 3 cut(s) 177, 630, 889
AlwI GGATC 1 cut(s) 1177
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 209, 437
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 4 cut(s) 515, 816, 958, 978
AspS9I GGNCC 2 cut(s) 233, 391
AsuHPI GGTGA 3 cut(s) 19, 23, 806
AsuII TTCGAA 1 cut(s) 735
AvaII GGWCC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 930, 963
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 196, 424
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 177, 630, 889
BfaI CTAG 2 cut(s) 891, 1050
BfmI CTRYAG 2 cut(s) 420, 477
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 2 cut(s) 210, 438
BlsI GCNGC 2 cut(s) 211, 439
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 233, 391
BmiI GGNNCC 2 cut(s) 158, 234
BmrI ACTGGG 1 cut(s) 1118
BmsI GCATC 1 cut(s) 815
BmuI ACTGGG 1 cut(s) 1118
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 208, 732
Bpu14I TTCGAA 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 4 cut(s) 13, 191, 715, 1124
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMII CTCAG 2 cut(s) 735, 872
BseNI ACTGG 4 cut(s) 13, 191, 715, 1124
BseRI GAGGAG 3 cut(s) 242, 747, 891
BseXI GCAGC 2 cut(s) 196, 424
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 100
BslFI GGGAC 3 cut(s) 78, 246, 1106
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 3 cut(s) 177, 630, 889
BsmFI GGGAC 3 cut(s) 78, 246, 1106
BsnI GGCC 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 735
Bsp143I GATC 4 cut(s) 97, 178, 1042, 1169
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 736, 871
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 32
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 158, 234
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 1177
BspT104I TTCGAA 1 cut(s) 735
BsrI ACTGG 4 cut(s) 13, 191, 715, 1124
BssMI GATC 4 cut(s) 97, 178, 1042, 1169
Bst4CI ACNGT 4 cut(s) 459, 497, 602, 1101
Bst6I CTCTTC 4 cut(s) 54, 191, 892, 907
BstBI TTCGAA 1 cut(s) 735
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 744, 858
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 100, 181, 1045, 1172
BstMAI GTCTC 3 cut(s) 177, 630, 889
BstMBI GATC 4 cut(s) 97, 178, 1042, 1169
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 848
BstNSI RCATGY 1 cut(s) 1074
BstPAI GACNNNNGTC 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 420, 477
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 196, 424
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 1042, 1169
BstYI RGATCY 2 cut(s) 1042, 1169
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 679
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 5 cut(s) 338, 607, 708, 741, 1131
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 1 cut(s) 628
Cfr13I GGNCC 2 cut(s) 233, 391
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 896, 939
CviAII CATG 7 cut(s) 213, 507, 629, 779, 1030, 1071, 1108
CviQI GTAC 2 cut(s) 896, 939
DdeI CTNAG 2 cut(s) 744, 858
DpnI GATC 4 cut(s) 99, 180, 1044, 1171
DpnII GATC 4 cut(s) 97, 178, 1042, 1169
DraI TTTAAA 1 cut(s) 655
Eam1104I CTCTTC 4 cut(s) 54, 191, 892, 907
EarI CTCTTC 4 cut(s) 54, 191, 892, 907
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 215, 333
EcoRV GATATC 1 cut(s) 538
FaeI CATG 7 cut(s) 216, 510, 632, 782, 1033, 1074, 1111
FaqI GGGAC 3 cut(s) 78, 246, 1106
FatI CATG 7 cut(s) 212, 506, 628, 778, 1029, 1070, 1107
FauNDI CATATG 1 cut(s) 1165
Fnu4HI GCNGC 2 cut(s) 210, 438
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 2 cut(s) 210, 438
FspBI CTAG 2 cut(s) 891, 1050
GluI GCNGC 2 cut(s) 210, 438
GsaI CCCAGC 1 cut(s) 565
GsuI CTGGAG 2 cut(s) 208, 732
HaeIII GGCC 1 cut(s) 393
Hin1II CATG 7 cut(s) 216, 510, 632, 782, 1033, 1074, 1111
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 5 cut(s) 52, 190, 566, 660, 754
HphI GGTGA 3 cut(s) 19, 23, 806
Hpy166II GTNNAC 1 cut(s) 896
Hpy188I TCNGA 4 cut(s) 195, 220, 811, 861
Hpy188III TCNNGA 6 cut(s) 56, 182, 374, 541, 629, 1050
Hpy8I GTNNAC 1 cut(s) 896
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 284, 308, 785, 1108
HpyCH4III ACNGT 4 cut(s) 459, 497, 602, 1101
HpyCH4V TGCA 5 cut(s) 212, 331, 455, 479, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 848
HpyF3I CTNAG 2 cut(s) 744, 858
Hsp92II CATG 7 cut(s) 216, 510, 632, 782, 1033, 1074, 1111
Kzo9I GATC 4 cut(s) 97, 178, 1042, 1169
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 196, 424
LweI GCATC 1 cut(s) 815
MaeI CTAG 2 cut(s) 891, 1050
MaeIII GTNAC 2 cut(s) 25, 916
MalI GATC 4 cut(s) 99, 180, 1044, 1171
MboI GATC 4 cut(s) 97, 178, 1042, 1169
MflI RGATCY 2 cut(s) 1042, 1169
MluCI AATT 5 cut(s) 165, 337, 525, 667, 784
MlyI GAGTC 2 cut(s) 199, 748
MmeI TCCRAC 2 cut(s) 198, 392
MroXI GAANNNNTTC 4 cut(s) 515, 816, 958, 978
MseI TTAA 4 cut(s) 81, 120, 146, 654
MspA1I CMGCKG 1 cut(s) 437
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 848
NdeI CATATG 1 cut(s) 1165
NdeII GATC 4 cut(s) 97, 178, 1042, 1169
NlaIII CATG 7 cut(s) 216, 510, 632, 782, 1033, 1074, 1111
NlaIV GGNNCC 2 cut(s) 158, 234
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 1074
NspV TTCGAA 1 cut(s) 735
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 379
PdmI GAANNNNTTC 4 cut(s) 515, 816, 958, 978
PfeI GAWTC 3 cut(s) 52, 566, 660
PkrI GCNGC 2 cut(s) 211, 439
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 2 cut(s) 198, 748
PpsI GAGTC 2 cut(s) 198, 748
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 158, 234
PspPI GGNCC 2 cut(s) 233, 391
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 1042, 1169
PvuI CGATCG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 897, 940
RsaNI GTAC 2 cut(s) 896, 939
SaqAI TTAA 4 cut(s) 81, 120, 146, 654
SatI GCNGC 2 cut(s) 210, 438
Sau3AI GATC 4 cut(s) 97, 178, 1042, 1169
Sau96I GGNCC 2 cut(s) 233, 391
SchI GAGTC 2 cut(s) 199, 748
SfaNI GCATC 1 cut(s) 815
SfcI CTRYAG 2 cut(s) 420, 477
SfuI TTCGAA 1 cut(s) 735
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 5 cut(s) 165, 337, 525, 667, 784
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 891, 1050
TaaI ACNGT 4 cut(s) 459, 497, 602, 1101
TaqI TCGA 3 cut(s) 96, 181, 735
TaqII GACCGA 1 cut(s) 250
TasI AATT 5 cut(s) 165, 337, 525, 667, 784
TfiI GAWTC 3 cut(s) 52, 566, 660
Tru1I TTAA 4 cut(s) 81, 120, 146, 654
Tru9I TTAA 4 cut(s) 81, 120, 146, 654
TscAI CASTG 5 cut(s) 338, 607, 715, 748, 1131
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 209, 437
Tsp45I GTSAC 1 cut(s) 25
TspGWI ACGGA 2 cut(s) 169, 537
TspRI CASTG 5 cut(s) 338, 607, 715, 748, 1131
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 337
XbaI TCTAGA 1 cut(s) 1049
XceI RCATGY 1 cut(s) 1074
XmnI GAANNNNTTC 4 cut(s) 515, 816, 958, 978
XspI CTAG 2 cut(s) 891, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.