Rh4BG141800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000244
Physical Location & Seq
Forward (+)
25155872 .. 25159442
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG141800.1

Sequence Viewer

Length: 480 bp
ATGTTACAAGCTTTGCCTTGTTTCTATTCTTCTATGTCTTGCACATTAACACTGTTGTTTCTATGGCAGACACATAATGATGATTCGAAGTATCGCTTCAAGACAATTGCTAATTGGGATGATATAGTGGACTTGTGTGCGAAGGATAGAGCCACTGGATGTGGGGCTGAAAATGCAGAGGATGCAAGTGAGACTACCAACATTGAAGAGGACAATACTAGCCTCAGTGGAACGGGAGGTAGTTTTCAAGATGATAGTTTGAAAAGAAAAGCAGTTTCTTCTACTTCAACAGTTCCATCAAGGCCAAAAAAAGTAAAGGTGGAAGAAACAATTGCCATGGCGGTATCTGAAATGGCTTCTTCAATCAAAGAAATGGCTTCTAGTATGGTTTCAACAACTTCAAAGAAAACAAATGTGACGGTTGATGAAGTTTATGAAGAGATGATGACAATACCTGATTTAGAAGAAGACCTTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

4.5

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 341
AgsI TTSAA 8 cut(s) 100, 206, 248, 262, 288, 363, 393, 402
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 185
AoxI GGCC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 471
AsuII TTCGAA 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 474
BccI CCATC 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 219, 381
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 3 cut(s) 124, 164, 187
BseMII CTCAG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 160
BshFI GGCC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 341
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 86
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 54, 292, 421
Bst6I CTCTTC 2 cut(s) 201, 432
BstAPI GCANNNNNTGC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 124, 164, 187
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 173, 182
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 1 cut(s) 304
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 124, 164, 187
BtsIMutI CAGTG 3 cut(s) 50, 153, 232
CviAII CATG 1 cut(s) 337
CviJI RGCY 7 cut(s) 11, 152, 167, 222, 304, 356, 377
CviKI_1 RGCY 7 cut(s) 11, 152, 167, 222, 304, 356, 377
DdeI CTNAG 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 201, 432
EarI CTCTTC 2 cut(s) 201, 432
Eco130I CCWWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 340
FaiI YATR 7 cut(s) 35, 64, 75, 125, 338, 386, 435
FalI AAGNNNNNCTT 3 cut(s) 80, 112, 456
FatI CATG 1 cut(s) 336
FokI GGATG 3 cut(s) 131, 171, 194
FspBI CTAG 2 cut(s) 219, 381
HaeIII GGCC 1 cut(s) 304
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 100, 248
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 54, 292, 421
HpyCH4V TGCA 3 cut(s) 42, 176, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 182
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 1 cut(s) 340
LpnPI CCDG 2 cut(s) 141, 468
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 219, 381
MaeIII GTNAC 2 cut(s) 3, 415
MboII GAAGA 8 cut(s) 21, 218, 270, 335, 351, 449, 476, 479
MfeI CAATTG 2 cut(s) 105, 330
MluCI AATT 3 cut(s) 105, 112, 330
MnlI CCTC 4 cut(s) 172, 202, 230, 233
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 78
MunI CAATTG 2 cut(s) 105, 330
MwoI GCNNNNNNNGC 2 cut(s) 173, 182
NcoI CCATGG 1 cut(s) 336
NlaIII CATG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 415
NspV TTCGAA 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 47
SetI ASST 5 cut(s) 13, 241, 321, 457, 474
SfaNI GCATC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 3 cut(s) 105, 112, 330
SsiI CCGC 1 cut(s) 341
SspMI CTAG 2 cut(s) 219, 381
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 54, 292, 421
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 105, 112, 330
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 3 cut(s) 57, 160, 232
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 441, 450
TspRI CASTG 3 cut(s) 57, 160, 232
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 219, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.