Rroxscaffold_2G00117910
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000244
Physical Location & Seq
Forward (+)
48553342 .. 48556794
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117910.1

Sequence Viewer

Length: 291 bp
ATGGCCACAGGAGAAATGAGTAGACTTGGAGGTAATGAGGTCAAAAACCGAGAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCCGAAGGCAAGAACTATTGGCAATGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTACACAGATTGATATTCAAATAAGTGCTGACAATATAAAAAACCCTGTGAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

8.96

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccI GTMKAC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 118
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 3 cut(s) 200, 206, 218
AluI AGCT 3 cut(s) 200, 206, 218
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 3 cut(s) 3, 90, 172
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 205
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 3 cut(s) 5, 92, 174
BsnI GGCC 3 cut(s) 5, 92, 174
BspANI GGCC 3 cut(s) 5, 92, 174
BsrDI GCAATG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 3 cut(s) 5, 92, 174
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 172
CviJI RGCY 7 cut(s) 5, 92, 143, 174, 200, 206, 218
CviKI_1 RGCY 7 cut(s) 5, 92, 143, 174, 200, 206, 218
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 3
FaiI YATR 6 cut(s) 128, 149, 177, 210, 269, 289
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 3 cut(s) 5, 92, 174
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 65, 89
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 23, 31, 151, 158
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PkrI GCNGC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 210
PspPI GGNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 172
SetI ASST 6 cut(s) 34, 42, 169, 202, 208, 220
SfcI CTRYAG 1 cut(s) 201
SgeI CNNG 8 cut(s) 21, 38, 62, 112, 146, 167, 176, 182
SmiI ATTTAAAT 1 cut(s) 123
Sse9I AATT 1 cut(s) 118
SwaI ATTTAAAT 1 cut(s) 123
TasI AATT 1 cut(s) 118
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 84
XapI RAATTY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.