Rw4G016450
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000244
Physical Location & Seq
Reverse (-)
37509694 .. 37517613
7920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016450.1

Sequence Viewer

Length: 855 bp
ATGGCCACAAGAGAAATGAGTAGACTTGGAGGAAATGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCCGAAGGCAAGAACTATTTGCAGTGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATATAGCTGCTTATATTTTATCTGCACAGTTTGATAGTCAAATAAGTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTCCTATGGAATTGATTCCTCAACACAAATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTGCAAGCTTTCGATTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTATTGTGGCAAAGATAGAGCCACTAGAGAGGGCGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAGAAAAAGAGAAATGAAGCAACAATCTCTTCTAGTGCACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTAGGTACTTCCGTGGATATAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAATTCTTGCCCCGAAAGATGTATGGACAGAAATAATGGCAACACAAGATCGTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTTCCAGTGGAAATGAAAAAACACATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

284

Amino Acids

32.21

Weight (kDa)

6.93

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 38 - 102 4.2e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccI GTMKAC 1 cut(s) 22
AclWI GGATC 1 cut(s) 853
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 118, 672
AdeI CACNNNGTG 1 cut(s) 823
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 2 cut(s) 647, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 5 cut(s) 200, 206, 218, 383, 390
AluI AGCT 5 cut(s) 200, 206, 218, 383, 390
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 1 cut(s) 375
Alw44I GTGCAC 1 cut(s) 570
AlwI GGATC 1 cut(s) 853
AoxI GGCC 3 cut(s) 3, 90, 172
ApaLI GTGCAC 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 218, 383
ApoI RAATTY 2 cut(s) 118, 672
Asp700I GAANNNNTTC 2 cut(s) 310, 654
AspLEI GCGC 2 cut(s) 467, 752
AspS9I GGNCC 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 480
BaeGI GKGCMC 1 cut(s) 574
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 205, 370
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 3 cut(s) 456, 567, 726
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 468
BisI GCNGC 2 cut(s) 219, 384
BlsI GCNGC 2 cut(s) 220, 385
BmgT120I GGNCC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 621
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 800
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 800
BseRI GAGGAG 2 cut(s) 492, 567
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 205, 370
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 3 cut(s) 5, 92, 174
BsiHKAI GWGCWC 1 cut(s) 574
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 375
BsnI GGCC 3 cut(s) 5, 92, 174
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 2 cut(s) 718, 845
BspANI GGCC 3 cut(s) 5, 92, 174
BspCNI CTCAG 1 cut(s) 481
BspHI TCATGA 1 cut(s) 373
BspPI GGATC 1 cut(s) 853
BspT104I TTCGAA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 2 cut(s) 718, 845
Bst4CI ACNGT 3 cut(s) 240, 278, 347
Bst6I CTCTTC 2 cut(s) 568, 583
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 135, 388, 748
BstDEI CTNAG 2 cut(s) 489, 610
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 467, 752
BstKTI GATC 2 cut(s) 721, 848
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 2 cut(s) 718, 845
BstNSI RCATGY 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 205, 370
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
BsuRI GGCC 3 cut(s) 5, 92, 174
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 4 cut(s) 119, 352, 486, 807
Cac8I GCNNGC 3 cut(s) 135, 388, 748
CciI TCATGA 1 cut(s) 373
CfoI GCGC 2 cut(s) 467, 752
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 615
CviAII CATG 6 cut(s) 288, 374, 524, 747, 784, 820
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 2 cut(s) 489, 610
DpnI GATC 2 cut(s) 720, 847
DpnII GATC 2 cut(s) 718, 845
DraI TTTAAA 2 cut(s) 123, 400
DraIII CACNNNGTG 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 568, 583
EarI CTCTTC 2 cut(s) 568, 583
FaeI CATG 6 cut(s) 291, 377, 527, 750, 787, 823
FatI CATG 6 cut(s) 287, 373, 523, 746, 783, 819
FauNDI CATATG 1 cut(s) 841
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 219, 384
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 219, 384
FspBI CTAG 3 cut(s) 456, 567, 726
GlaI GCGC 2 cut(s) 466, 751
GluI GCNGC 2 cut(s) 219, 384
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 3 cut(s) 5, 92, 174
HhaI GCGC 2 cut(s) 467, 752
Hin1II CATG 6 cut(s) 291, 377, 527, 750, 787, 823
Hin6I GCGC 2 cut(s) 465, 750
HinP1I GCGC 2 cut(s) 465, 750
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 3 cut(s) 311, 405, 499
Hpy166II GTNNAC 2 cut(s) 23, 572
Hpy188III TCNNGA 3 cut(s) 155, 374, 726
Hpy8I GTNNAC 2 cut(s) 23, 572
HpyAV CCTTC 3 cut(s) 65, 89, 784
HpyCH4III ACNGT 3 cut(s) 240, 278, 347
HpyCH4V TGCA 5 cut(s) 112, 236, 386, 572, 851
HpyF3I CTNAG 2 cut(s) 489, 610
Hsp92II CATG 6 cut(s) 291, 377, 527, 750, 787, 823
HspAI GCGC 2 cut(s) 465, 750
Kzo9I GATC 2 cut(s) 718, 845
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 155, 459, 519, 813
Lsp1109I GCAGC 2 cut(s) 205, 370
MaeI CTAG 3 cut(s) 456, 567, 726
MaeIII GTNAC 1 cut(s) 592
MalI GATC 2 cut(s) 720, 847
MboI GATC 2 cut(s) 718, 845
MboII GAAGA 6 cut(s) 368, 527, 555, 600, 659, 743
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 118, 306, 412, 672, 776
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 310, 654
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 122, 399
Msp20I TGGCCA 1 cut(s) 5
NdeI CATATG 1 cut(s) 841
NdeII GATC 2 cut(s) 718, 845
NlaIII CATG 6 cut(s) 291, 377, 527, 750, 787, 823
NspI RCATGY 1 cut(s) 750
NspV TTCGAA 1 cut(s) 480
PaeI GCATGC 1 cut(s) 750
PagI TCATGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 310, 654
PfeI GAWTC 2 cut(s) 311, 405
PkrI GCNGC 2 cut(s) 220, 385
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PsiI TTATAA 1 cut(s) 210
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 845
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 2 cut(s) 122, 399
SatI GCNGC 2 cut(s) 219, 384
Sau3AI GATC 2 cut(s) 718, 845
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 480
SmiI ATTTAAAT 1 cut(s) 123
SphI GCATGC 1 cut(s) 750
Sse9I AATT 5 cut(s) 118, 306, 412, 672, 776
SspMI CTAG 3 cut(s) 456, 567, 726
SwaI ATTTAAAT 1 cut(s) 123
TaaI ACNGT 3 cut(s) 240, 278, 347
TaqI TCGA 3 cut(s) 394, 480, 528
TasI AATT 5 cut(s) 118, 306, 412, 672, 776
TfiI GAWTC 2 cut(s) 311, 405
Tru1I TTAA 2 cut(s) 122, 399
Tru9I TTAA 2 cut(s) 122, 399
TscAI CASTG 4 cut(s) 119, 352, 493, 807
TseI GCWGC 2 cut(s) 218, 383
TspDTI ATGAA 8 cut(s) 84, 354, 393, 528, 564, 627, 824, 828
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 4 cut(s) 119, 352, 493, 807
VneI GTGCAC 1 cut(s) 570
XapI RAATTY 2 cut(s) 118, 672
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 2 cut(s) 310, 654
XspI CTAG 3 cut(s) 456, 567, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.