Rh2DG065900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000244
Physical Location & Seq
Forward (+)
4971143 .. 4972233
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG065900.1

Sequence Viewer

Length: 804 bp
ATGCCCAATGATCAACTATTGGATGATGTGGACCGAGACTTAGAAAATACACTTGAGGTGGAAGATGAAGATGTGGATGATGAGAACATTAGAGTAGTCAAAGTAACTCGAGAGTGGACAACATTTAGAGATGCTTTAGCTATGGAAATAATATTCCTTGTTTTCCTTTTAGTCAAGAAATGCATTAACTCTAACAAATTGAGAGCTAAGCTCAGAGAGAGAAGACGTGAAAGAAAAGAAGTTGGACACAAGGCTGATGGAGACTGGAAACCTCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACCGACATCAAAAGTCAAAGCGGGCTTGTTTGGGATGAAGAGAAAAAGATTGTTCCAATCACTGCAAAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAATTGGGATGATATCGCTATGTTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTCGACTTGTGAATCACATCCTCCAAATGAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTATGGCAGCTCAAGTCTCCCCACAACTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

267

Amino Acids

30.46

Weight (kDa)

5.11

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 78 - 159 2.3e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 405
AclWI GGATC 2 cut(s) 716, 729
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 2 cut(s) 462, 614
AcuI CTGAAG 1 cut(s) 621
AgsI TTSAA 3 cut(s) 304, 620, 763
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 6 cut(s) 140, 206, 211, 278, 566, 779
AluI AGCT 6 cut(s) 140, 206, 211, 278, 566, 779
Alw26I GTCTC 5 cut(s) 30, 255, 329, 361, 790
AlwI GGATC 2 cut(s) 716, 729
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 1 cut(s) 750
ApeKI GCWGC 2 cut(s) 671, 776
ApoI RAATTY 2 cut(s) 462, 614
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 3 cut(s) 376, 584, 755
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 752
BamHI GGATCC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 683, 788
BccI CCATC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciT130I CCWGG 1 cut(s) 458
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 5 cut(s) 30, 255, 329, 361, 790
BfaI CTAG 1 cut(s) 728
BisI GCNGC 2 cut(s) 672, 777
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 2 cut(s) 673, 778
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 121, 586
BpiI GAAGAC 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 195, 227
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 4 cut(s) 74, 258, 338, 765
BsaI GGTCTC 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 269, 574
BseBI CCWGG 1 cut(s) 458
BseGI GGATG 6 cut(s) 28, 82, 424, 487, 538, 694
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 2 cut(s) 269, 574
BseXI GCAGC 2 cut(s) 683, 788
BshFI GGCC 1 cut(s) 752
BsiHKCI CYCGRG 1 cut(s) 108
BsmAI GTCTC 5 cut(s) 30, 255, 329, 361, 790
BsmI GAATGC 2 cut(s) 310, 475
BsnI GGCC 1 cut(s) 752
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 108
Bsp143I GATC 2 cut(s) 10, 721
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 1 cut(s) 405
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 723
BspPI GGATC 2 cut(s) 716, 729
BspTNI GGTCTC 1 cut(s) 329
BsrI ACTGG 2 cut(s) 269, 574
BssMI GATC 2 cut(s) 10, 721
Bst2UI CCWGG 1 cut(s) 458
Bst6I CTCTTC 2 cut(s) 359, 417
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 40, 207, 212
BstF5I GGATG 6 cut(s) 28, 82, 424, 487, 538, 694
BstKTI GATC 2 cut(s) 13, 724
BstMAI GTCTC 5 cut(s) 30, 255, 329, 361, 790
BstMBI GATC 2 cut(s) 10, 721
BstMWI GCNNNNNNNGC 2 cut(s) 284, 668
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 2 cut(s) 662, 671
BstSCI CCNGG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 683, 788
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 1 cut(s) 752
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 6 cut(s) 28, 82, 424, 487, 538, 694
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 3 cut(s) 312, 659, 668
DdeI CTNAG 3 cut(s) 40, 207, 212
DpnI GATC 2 cut(s) 12, 723
DpnII GATC 2 cut(s) 10, 721
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 2 cut(s) 359, 417
EarI CTCTTC 2 cut(s) 359, 417
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 2 cut(s) 506, 538
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 2 cut(s) 506, 538
EcoT22I ATGCAT 1 cut(s) 185
FaeI CATG 3 cut(s) 315, 662, 671
FatI CATG 3 cut(s) 311, 658, 667
FauI CCCGC 1 cut(s) 398
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 672, 777
FokI GGATG 6 cut(s) 35, 89, 431, 474, 545, 681
Fsp4HI GCNGC 2 cut(s) 672, 777
FspBI CTAG 1 cut(s) 728
GluI GCNGC 2 cut(s) 672, 777
HaeIII GGCC 1 cut(s) 752
Hin1II CATG 3 cut(s) 315, 662, 671
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 4 cut(s) 351, 482, 646, 689
HphI GGTGA 3 cut(s) 376, 584, 755
Hpy166II GTNNAC 2 cut(s) 31, 117
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 110, 175, 343
Hpy8I GTNNAC 2 cut(s) 31, 117
HpyAV CCTTC 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 183, 449, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 668
HpyF3I CTNAG 3 cut(s) 40, 207, 212
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 315, 662, 671
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 721
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 4 cut(s) 250, 443, 470, 555
Lsp1109I GCAGC 2 cut(s) 683, 788
LweI GCATC 2 cut(s) 121, 586
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 3 cut(s) 103, 483, 643
MalI GATC 2 cut(s) 12, 723
MboI GATC 2 cut(s) 10, 721
MboII GAAGA 9 cut(s) 74, 80, 234, 376, 434, 596, 614, 638, 641
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 752
MluCI AATT 6 cut(s) 197, 462, 526, 614, 652, 738
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 3 cut(s) 345, 491, 640
MmeI TCCRAC 2 cut(s) 223, 571
MnlI CCTC 4 cut(s) 49, 282, 549, 708
Mox20I TGGCCA 1 cut(s) 752
Mph1103I ATGCAT 1 cut(s) 185
MscI TGGCCA 1 cut(s) 752
MseI TTAA 2 cut(s) 186, 336
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 310, 475
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 284, 668
NdeII GATC 2 cut(s) 10, 721
NlaIII CATG 3 cut(s) 315, 662, 671
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 483, 643
NsiI ATGCAT 1 cut(s) 185
NspI RCATGY 2 cut(s) 662, 671
PaeR7I CTCGAG 1 cut(s) 108
PctI GAATGC 2 cut(s) 310, 475
PfeI GAWTC 1 cut(s) 689
PkrI GCNGC 2 cut(s) 673, 778
PleI GAGTC 3 cut(s) 345, 490, 640
PpsI GAGTC 3 cut(s) 345, 490, 640
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 721
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 2 cut(s) 186, 336
SatI GCNGC 2 cut(s) 672, 777
Sau3AI GATC 2 cut(s) 10, 721
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 3 cut(s) 345, 491, 640
ScrFI CCNGG 1 cut(s) 458
SfaNI GCATC 2 cut(s) 121, 586
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 5 cut(s) 53, 108, 273, 353, 780
SmoI CTYRAG 5 cut(s) 53, 108, 273, 353, 780
Sse9I AATT 6 cut(s) 197, 462, 526, 614, 652, 738
SsiI CCGC 1 cut(s) 405
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 456
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 109, 680
TaqII GACCGA 1 cut(s) 48
TasI AATT 6 cut(s) 197, 462, 526, 614, 652, 738
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 2 cut(s) 186, 336
Tru9I TTAA 2 cut(s) 186, 336
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 2 cut(s) 483, 643
TseI GCWGC 2 cut(s) 671, 776
Tsp45I GTSAC 2 cut(s) 483, 643
TspDTI ATGAA 3 cut(s) 81, 435, 648
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 462, 614
XceI RCATGY 2 cut(s) 662, 671
XhoI CTCGAG 1 cut(s) 108
XspI CTAG 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.