FvH4_6g32032
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000244
Physical Location & Seq
Forward (+)
25139727 .. 25142443
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32032.t1

Sequence Viewer

Length: 996 bp
ATGGGAAGAACTGAAAAACGGCGGTCGCTAGCCCAAATTACTTGTTCACAATCTCAGATGAAAGGTAAGGCAGGGCCATATATCTCATGGAACAAACAAATGGATGCTGCATTGGCTAAAGCTTTGACTGGCCAAATGAAGCAAGGTAACAGGGCTGATGGACAATGGACAAGACATGCCATTGAAGCAGTTGTGCATGAGTTAAATATGACTTTAGAACTTGATTTGACAAAAGACAATGTGAAGAATAGACTGAAGGCTTGGAAGAGACGTTATGCCATTATATCTGATATCAAGAATCAAAATCGGCGTATGTGGGATGAAGGTAGGAAGATGGTTGTAATCACACCACAAAATCTGGAAGCTTGGAATGATTATGTAGAGTCACATCCTCTTGCACGTCGCTATCAAAACAAATTCATTGATAATTGGGGTGACCTTGCATTGCTATGTGGGAATGATACGACAACAGTTGAAGGTCCTGAAAATATTGAAGATGTTGAAGGAGCAATGGGAGTTGAGGAGGAAAATGGAGTCAATTTCATCTCTAGTTCCCGTAGTGTTACACATCCTTCAGCTTCAACTTCAGATTCGCAGCCACTGATGAACAAAGCCGAGAAACATCCGTTGAGAGTTGAAGAAGAAAATGAAGTTAATTCAATTTCTAATTCACATAGCTCAACTCATCCTTCAGCATCAACTTCTAACCTGCATCAAAAGAAGAAAGCAAAGAAAGACCTCTTGGCAGATGCAGTTGGTGAGATGGCATCTTCGCTAAAGGAGTATTTGGCAAGTAAGATGGACCTGAACAGAACCCAACCCAAAGGTGAAGAAGTATATGAGGTGGTTTCAAAGGTACCAGGGCTCAGTAAATTGCAGATTTTTAAGGCCATACGAGTATTACTGAATGGTAACCCGGAAGAGTTCTTTCTATTGAAATATCTTCCTGATGCTGAGAAGACAGAGTGGATACTATATCTTATTACTCACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

332

Amino Acids

37.41

Weight (kDa)

7.76

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 29 - 126 6.6e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 717
Acc65I GGTACC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 856
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 4 cut(s) 275, 558, 570, 675
AfaI GTAC 1 cut(s) 858
AgsI TTSAA 9 cut(s) 185, 476, 494, 503, 582, 638, 660, 852, 937
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 1 cut(s) 859
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 4 cut(s) 122, 365, 578, 678
AluI AGCT 4 cut(s) 122, 365, 578, 678
Alw26I GTCTC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 601
AoxI GGCC 3 cut(s) 74, 130, 888
ApeKI GCWGC 2 cut(s) 107, 595
ApoI RAATTY 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 856
AspS9I GGNCC 3 cut(s) 74, 479, 802
AsuC2I CCSGG 1 cut(s) 917
AsuHPI GGTGA 3 cut(s) 446, 770, 839
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 2 cut(s) 479, 802
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 965
BbvI GCAGC 2 cut(s) 94, 607
BccI CCATC 4 cut(s) 152, 328, 757, 793
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 1 cut(s) 963
BcnI CCSGG 1 cut(s) 917
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 29, 549
BfuAI ACCTGC 1 cut(s) 717
BfuI GTATCC 1 cut(s) 963
BisI GCNGC 2 cut(s) 108, 596
BlsI GCNGC 2 cut(s) 109, 597
Bme1390I CCNGG 2 cut(s) 861, 917
Bme18I GGWCC 2 cut(s) 479, 802
BmgBI CACGTC 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 74, 479, 802
BmiI GGNNCC 1 cut(s) 858
BmrFI CCNGG 2 cut(s) 861, 917
BmsI GCATC 6 cut(s) 94, 704, 721, 739, 776, 940
BmtI GCTAGC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 860
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 443, 516
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 860
BseGI GGATG 6 cut(s) 109, 325, 388, 568, 622, 685
BseMI GCAATG 2 cut(s) 443, 516
BseMII CTCAG 3 cut(s) 68, 880, 945
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 2 cut(s) 94, 607
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 76, 132, 890
BshNI GGYRCC 1 cut(s) 856
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 917
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsnI GGCC 3 cut(s) 76, 132, 890
Bsp1286I GDGCHC 1 cut(s) 867
BspACI CCGC 1 cut(s) 22
BspANI GGCC 3 cut(s) 76, 132, 890
BspCNI CTCAG 3 cut(s) 67, 879, 946
BspLI GGNNCC 1 cut(s) 858
BspMI ACCTGC 1 cut(s) 717
BspOI GCTAGC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 856
BsrDI GCAATG 2 cut(s) 443, 516
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 260, 915
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 54, 866, 954
BstEII GGTNACC 2 cut(s) 434, 911
BstF5I GGATG 6 cut(s) 109, 325, 388, 568, 622, 685
BstMAI GTCTC 1 cut(s) 262
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 113, 185
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 179
BstPI GGTNACC 2 cut(s) 434, 911
BstSCI CCNGG 2 cut(s) 859, 915
BstV1I GCAGC 2 cut(s) 94, 607
BstV2I GAAGAC 1 cut(s) 965
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 3 cut(s) 76, 132, 890
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 6 cut(s) 109, 325, 388, 568, 622, 685
BtsIMutI CAGTG 1 cut(s) 599
BveI ACCTGC 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 74, 479, 802
Csp6I GTAC 1 cut(s) 857
CviAII CATG 3 cut(s) 87, 176, 197
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 3 cut(s) 54, 866, 954
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 260, 915
EarI CTCTTC 2 cut(s) 260, 915
Eco24I GRGCYC 1 cut(s) 867
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 479, 802
Eco57I CTGAAG 4 cut(s) 275, 558, 570, 675
Eco91I GGTNACC 2 cut(s) 434, 911
EcoO109I RGGNCCY 1 cut(s) 479
EcoO65I GGTNACC 2 cut(s) 434, 911
EcoRII CCWGG 1 cut(s) 859
EcoRV GATATC 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 867
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 3 cut(s) 90, 179, 200
FatI CATG 3 cut(s) 86, 175, 196
Fnu4HI GCNGC 2 cut(s) 108, 596
FokI GGATG 6 cut(s) 116, 332, 375, 555, 609, 672
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 2 cut(s) 108, 596
FspBI CTAG 2 cut(s) 29, 549
GluI GCNGC 2 cut(s) 108, 596
HaeIII GGCC 3 cut(s) 76, 132, 890
HapII CCGG 1 cut(s) 917
Hin1II CATG 3 cut(s) 90, 179, 200
HindIII AAGCTT 2 cut(s) 120, 363
HinfI GANTC 4 cut(s) 298, 383, 534, 590
HpaII CCGG 1 cut(s) 917
HphI GGTGA 3 cut(s) 446, 770, 839
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 57, 289, 589
Hpy188III TCNNGA 4 cut(s) 295, 359, 482, 947
Hpy8I GTNNAC 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 6 cut(s) 250, 317, 470, 497, 582, 699
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 271, 400
HpyCH4V TGCA 7 cut(s) 110, 196, 398, 443, 712, 752, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 185
HpyF3I CTNAG 3 cut(s) 54, 866, 954
HpySE526I ACGT 2 cut(s) 271, 400
Hsp92II CATG 3 cut(s) 90, 179, 200
KpnI GGTACC 1 cut(s) 860
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 2 cut(s) 94, 607
LweI GCATC 6 cut(s) 94, 704, 721, 739, 776, 940
MaeI CTAG 2 cut(s) 29, 549
MaeII ACGT 2 cut(s) 271, 400
MaeIII GTNAC 5 cut(s) 146, 384, 434, 562, 911
MhlI GDGCHC 1 cut(s) 867
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 8 cut(s) 36, 416, 427, 538, 655, 660, 667, 872
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 2 cut(s) 392, 543
MnlI CCTC 5 cut(s) 402, 514, 517, 749, 835
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
MseI TTAA 4 cut(s) 203, 654, 885, 994
MslI CAYNNNNRTG 1 cut(s) 448
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 1 cut(s) 917
MspR9I CCNGG 2 cut(s) 861, 917
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 2 cut(s) 113, 185
NciI CCSGG 1 cut(s) 917
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 90, 179, 200
NlaIV GGNNCC 1 cut(s) 858
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 384, 434
NspI RCATGY 1 cut(s) 179
PfeI GAWTC 2 cut(s) 298, 590
PkrI GCNGC 2 cut(s) 109, 597
PleI GAGTC 2 cut(s) 391, 542
PpsI GAGTC 2 cut(s) 391, 542
PpuMI RGGWCCY 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 859
PspEI GGTNACC 2 cut(s) 434, 911
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 1 cut(s) 858
PspPI GGNCC 3 cut(s) 74, 479, 802
PspPPI RGGWCCY 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 601
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
RseI CAYNNNNRTG 1 cut(s) 448
SaqAI TTAA 4 cut(s) 203, 654, 885, 994
SatI GCNGC 2 cut(s) 108, 596
Sau96I GGNCC 3 cut(s) 74, 479, 802
SchI GAGTC 2 cut(s) 392, 543
ScrFI CCNGG 2 cut(s) 861, 917
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 6 cut(s) 94, 704, 721, 739, 776, 940
SinI GGWCC 2 cut(s) 479, 802
SmiMI CAYNNNNRTG 1 cut(s) 448
Sse9I AATT 8 cut(s) 36, 416, 427, 538, 655, 660, 667, 872
SsiI CCGC 1 cut(s) 22
SspI AATATT 1 cut(s) 490
SspMI CTAG 2 cut(s) 29, 549
StyD4I CCNGG 2 cut(s) 859, 915
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 274, 403
TasI AATT 8 cut(s) 36, 416, 427, 538, 655, 660, 667, 872
TfiI GAWTC 2 cut(s) 298, 590
Tru1I TTAA 4 cut(s) 203, 654, 885, 994
Tru9I TTAA 4 cut(s) 203, 654, 885, 994
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 2 cut(s) 384, 434
TseI GCWGC 2 cut(s) 107, 595
Tsp45I GTSAC 2 cut(s) 384, 434
TspDTI ATGAA 7 cut(s) 74, 152, 336, 409, 532, 620, 663
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 479, 802
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XspI CTAG 2 cut(s) 29, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.